%%% -*-BibTeX-*-
%%% ====================================================================
%%% BibTeX-file{
%%% author = "Nelson H. F. Beebe",
%%% version = "4.01",
%%% date = "25 July 2014",
%%% time = "07:31:06 MDT",
%%% filename = "s-plus.bib",
%%% address = "University of Utah
%%% Department of Mathematics, 110 LCB
%%% 155 S 1400 E RM 233
%%% Salt Lake City, UT 84112-0090
%%% USA",
%%% telephone = "+1 801 581 5254",
%%% FAX = "+1 801 581 4148",
%%% URL = "http://www.math.utah.edu/~beebe",
%%% checksum = "34404 24932 103420 1077165",
%%% email = "beebe at math.utah.edu, beebe at acm.org,
%%% beebe at computer.org (Internet)",
%%% codetable = "ISO/ASCII",
%%% keywords = "bibliography; BibTeX; Bioconductor; R; S;
%%% S-Plus; statistics; Sweave",
%%% license = "public domain",
%%% supported = "yes",
%%% docstring = "This is a bibliography on the S and S-Plus
%%% statistics programming languages.
%%%
%%% The vendor World-Wide Web site is now at
%%%
%%% http://www.insightful.com/splus
%%%
%%% Recently, a freely-distributable
%%% reimplementation of S-Plus, called R, has
%%% been developed; for details, see the
%%% World-Wide Web locations
%%%
%%% http://lib.stat.cmu.edu/R
%%% http://lib.stat.cmu.edu/R/CRAN/doc/FAQ/R-FAQ.html
%%%
%%% There is also a useful site at
%%%
%%% http://franz.stat.wisc.edu
%%%
%%% which ``offers North American mirrors of
%%% several sites of interest to statisticians:
%%%
%%% Comprehensive R Archive Network (CRAN)
%%%
%%% R, a language described by its
%%% creators Ross Ihaka and Robert
%%% Gentleman as `not unlike S', is
%%% freely available under the terms of
%%% the GNU Public License. The source
%%% for Unix, Windows or Macintosh
%%% systems is available. Compiled
%%% binaries are available for Debian
%%% Linux, RedHat Linux, Windows or
%%% Macintosh systems.
%%%
%%% Modern Applied Statistics with S-PLUS
%%%
%%% Description and support files for the
%%% second edition of the classic book by
%%% Bill Venables and Brian Ripley.
%%%
%%% Emacs Speaks Statistics
%%%
%%% An enhanced and extended version of
%%% S-mode for GNU emacs or xemacs.
%%%
%%% PSPP
%%%
%%% A free, compatible replacement for
%%% the statistical package SPSS. PSPP
%%% was originally called Fiasco.
%%%
%%% Local Projects:
%%%
%%% Mixed-Effects Models in S
%%%
%%% A library for S-PLUS (and perhaps other
%%% dialects of S) developed by Jose Pinheiro
%%% and Douglas Bates.
%%%
%%% Current Index to Statistics Client/Server
%%%
%%% Software for client/server access to the
%%% Current Index to Statistics.''
%%%
%%% There are electronic archives of S-related
%%% reports at:
%%%
%%% http://netlib.att.com/cm/ms/departments/sia/doc/index.html
%%% http://netlib.att.com/cm/ms/departments/sia/jmc
%%% http://netlib.bell-labs.com/cm/ms/departments/sia/project/trellis/index.html
%%%
%%% There is a frequently-asked questions list at:
%%%
%%% http://www.stat.mat.ethz.ch/S-FAQ
%%%
%%% There is an S-News mailing list at
%%%
%%% s-news at utstat.toronto.edu
%%%
%%% Subscription requests should go to
%%%
%%% s-news-request at utstat.toronto.edu
%%%
%%% At version 4.01, the year coverage looked
%%% like this:
%%%
%%% 1977 ( 1) 1990 ( 1) 2003 ( 19)
%%% 1978 ( 0) 1991 ( 2) 2004 ( 17)
%%% 1979 ( 0) 1992 ( 5) 2005 ( 42)
%%% 1980 ( 0) 1993 ( 19) 2006 ( 33)
%%% 1981 ( 1) 1994 ( 13) 2007 ( 54)
%%% 1982 ( 0) 1995 ( 21) 2008 ( 61)
%%% 1983 ( 1) 1996 ( 8) 2009 ( 85)
%%% 1984 ( 2) 1997 ( 14) 2010 ( 80)
%%% 1985 ( 4) 1998 ( 10) 2011 ( 109)
%%% 1986 ( 1) 1999 ( 8) 2012 ( 111)
%%% 1987 ( 1) 2000 ( 9) 2013 ( 59)
%%% 1988 ( 1) 2001 ( 9) 2014 ( 31)
%%% 1989 ( 0) 2002 ( 14)
%%%
%%% Article: 587
%%% Book: 203
%%% InProceedings: 9
%%% Manual: 25
%%% MastersThesis: 3
%%% Misc: 3
%%% PhdThesis: 1
%%% Proceedings: 8
%%% TechReport: 7
%%%
%%% Total entries: 846
%%%
%%% This bibliography has been collected from
%%% the author's personal bibliography files,
%%% from the very large computer science
%%% bibliography collection on ftp.ira.uka.de
%%% in /pub/bibliography to which many people
%%% of have contributed, and from several
%%% Internet-accessible library catalogs,
%%% notably those of the University of
%%% California, Stanford University, Library
%%% of Congress, and OCLC.
%%%
%%% At version 1.05 [05-Feb-1996], a search of
%%% the OCLC Article1st database resulted in
%%% the addition of only 5 new references; it
%%% appears that relatively little mention is
%%% being made in current literature about this
%%% programming system.
%%%
%%% At version 3.00 [24-Apr-2014], the number of
%%% entries was almost tripled, after automating
%%% the job of searching the bibliography
%%% archives for entries about R and S-Plus.
%%%
%%% At version 4.00 [10-Jul-2014], the number of
%%% entries increased by more than 180, with
%%% additions of entries with book reviews in
%%% probability and statistics journals, and
%%% entries for all of those reviewed books, of
%%% which 72 are new with this version.
%%%
%%% BibTeX citation tags are uniformly chosen
%%% as name:year:abbrev, where name is the
%%% family name of the first author or editor,
%%% year is a 4-digit number, and abbrev is a
%%% 3-letter condensation of important title
%%% words. Citation tags were automatically
%%% generated by software developed for the
%%% BibNet Project.
%%%
%%% In this bibliography, entries are sorted
%%% first by ascending year, and within each
%%% year, alphabetically by author or editor,
%%% and then, if necessary, by the 3-letter
%%% abbreviation at the end of the BibTeX
%%% citation tag, using the ``bibsort -byyear''
%%% utility. Year order has been chosen to
%%% make it easier to identify the most recent
%%% work.
%%%
%%% The checksum field above contains a CRC-16
%%% checksum as the first value, followed by the
%%% equivalent of the standard UNIX wc (word
%%% count) utility output of lines, words, and
%%% characters. This is produced by Robert
%%% Solovay's checksum utility.",
%%% }
%%% ====================================================================
@Preamble{"\input bibnames.sty "
# "\input path.sty "
# "\ifx \undefined \booktitle \def \booktitle#1{{{\em #1}}} \fi"
# "\hyphenation{Pren-tice Rich-ard Spring-er} "
}
%%% ====================================================================
%%% Acknowledgement abbreviations:
@String{ack-nhfb = "Nelson H. F. Beebe,
University of Utah,
Department of Mathematics, 110 LCB,
155 S 1400 E RM 233,
Salt Lake City, UT 84112-0090, USA,
Tel: +1 801 581 5254,
FAX: +1 801 581 4148,
e-mail: \path|beebe@math.utah.edu|,
\path|beebe@acm.org|,
\path|beebe@computer.org| (Internet),
URL: \path|http://www.math.utah.edu/~beebe/|"}
%%% ====================================================================
%%% Journal abbreviations:
@String{j-AMER-STAT = "The American Statistician"}
@String{j-APPL-MATH-COMP = "Applied Mathematics and Computation"}
@String{j-APPL-STAT = "Applied Statistics"}
@String{j-ASPECTS-APPL-BIOL = "Aspects of Applied Biology"}
@String{j-ATT-TECH-J = "AT\&T Technical Journal"}
@String{j-CACM = "Communications of the ACM"}
@String{j-CCPE = "Concurrency and Computation: Prac\-tice and
Experience"}
@String{j-COMP-STAT-DATA-ANA = "Computational Statistics and Data Analysis"}
@String{j-COMP-GEOSCI = "Computers and Geosciences"}
@String{j-COMPUT-SCI-ENG = "Computing in Science and Engineering"}
@String{j-DDJ = "Dr. Dobb's Journal of Software Tools"}
@String{j-IEEE-TRANS-SOFTW-ENG = "IEEE Transactions on Software Engineering"}
@String{j-INT-J-PARALLEL-PROG = "International Journal of Parallel
Programming"}
@String{j-INT-STAT-REV = "International Statistical Review =
Revue Internationale de Statistique"}
@String{j-J-AM-STAT-ASSOC = "Journal of the American Statistical
Association"}
@String{j-J-APPL-ECONOMETRICS = "Journal of Applied Econometrics"}
@String{j-J-APPL-STAT = "Journal of Applied Statistics"}
@String{j-J-COMPUT-GRAPH-STAT = "Journal of Computational and Graphical
Statistics"}
@String{j-J-PAR-DIST-COMP = "Journal of Parallel and Distributed
Computing"}
@String{j-J-STAT-COMPUT-SIMUL = "Journal of Statistical Computation and
Simulation"}
@String{j-J-STAT-SOFT = "Journal of Statistical Software"}
@String{j-LECT-NOTES-COMP-SCI = "Lecture Notes in Computer Science"}
@String{j-LINUX-J = "Linux Journal"}
@String{j-OPT-METH-SOFT = "Optimization Methods and Software"}
@String{j-RELIABLE-COMPUTING = "Reliable Computing = Nadezhnye vychisleniia"}
@String{j-SIGACT = "ACM SIGACT News"}
@String{j-SIGPLAN = "ACM SIG{\-}PLAN Notices"}
@String{j-SILICON-GRAPHICS-WORLD = "Silicon Graphics World"}
@String{j-SOC-METH-RES = "Sociological methods and research"}
@String{j-STAT-SCI = "Statistical Science"}
@String{j-TECHNOMETRICS = "Technometrics"}
@String{j-TOMACS = "ACM Transactions on Modeling and
Computer Simulation"}
%%% ====================================================================
%%% Publishers and their addresses:
@String{pub-AW = "Ad{\-d}i{\-s}on-Wes{\-l}ey"}
@String{pub-AW:adr = "Reading, MA, USA"}
@String{pub-BROOKS-COLE = "Brooks\slash Cole Publishing Co."}
@String{pub-BROOKS-COLE:adr = "Pacific Grove, CA, USA"}
@String{pub-CAMBRIDGE = "Cambridge University Press"}
@String{pub-CAMBRIDGE:adr = "Cambridge, UK"}
@String{pub-CHAPMAN-HALL = "Chapman and Hall, Ltd."}
@String{pub-CHAPMAN-HALL:adr = "London, UK"}
@String{pub-CHAPMAN-HALL-CRC = "Chapman and Hall/CRC"}
@String{pub-CHAPMAN-HALL-CRC:adr = "Boca Raton, FL, USA"}
@String{pub-CRC = "CRC Press"}
@String{pub-CRC:adr = "2000 N.W. Corporate Blvd., Boca Raton,
FL 33431-9868, USA"}
@String{pub-DUXBURY = "Duxbury Press"}
@String{pub-DUXBURY:adr = "Belmont, CA, USA"}
@String{pub-DUXBURY-PRESS = "Duxbury Press"}
@String{pub-DUXBURY-PRESS:adr = "North Scituate, MA, USA"}
@String{pub-GORDON-BREACH = "Gordon and Breach"}
@String{pub-GORDON-BREACH:adr = "Langhorne, PA, USA"}
@String{pub-IEEE = "IEEE Computer Society Press"}
@String{pub-IEEE:adr = "1109 Spring Street, Suite 300, Silver
Spring, MD 20910, USA"}
@String{pub-MANNING = "Manning Publications"}
@String{pub-MANNING:adr = "Greenwich, CT, USA"}
@String{pub-NETWORK-THEORY = "Network Theory Ltd."}
@String{pub-NETWORK-THEORY:adr = "Bristol, UK"}
@String{pub-NO-STARCH = "No Starch Press"}
@String{pub-NO-STARCH:adr = "San Francisco, CA, USA"}
@String{pub-ORA = "O'Reilly \& {Associates, Inc.}"}
@String{pub-ORA:adr = "981 Chestnut Street, Newton, MA 02164, USA"}
@String{pub-ORA-MEDIA = "O'Reilly Media, Inc."}
@String{pub-ORA-MEDIA:adr = "1005 Gravenstein Highway North, Sebastopol,
CA 95472, USA"}
@String{pub-OXFORD = "Oxford University Press"}
@String{pub-OXFORD:adr = "Walton Street, Oxford OX2 6DP, UK"}
@String{pub-SAS = "SAS Institute"}
@String{pub-SAS:adr = "SAS Circle, Box 8000, Cary, NC
27512-8000, USA"}
@String{pub-STATSCI = "StatSci, a Division of MathSoft, Inc."}
@String{pub-STATSCI:adr = "Seattle, WA, USA"}
@String{pub-SV = "Spring{\-}er-Ver{\-}lag"}
@String{pub-SV:adr = "Berlin, Germany~/ Heidelberg, Germany~/
London, UK~/ etc."}
@String{pub-TAYLOR-FRANCIS = "Taylor and Francis"}
@String{pub-TAYLOR-FRANCIS:adr = "Boca Raton, FL, USA"}
@String{pub-WADSWORTH = "Wadsworth"}
@String{pub-WADSWORTH:adr = "Pacific Grove, CA, USA"}
@String{pub-WILEY = "Wiley"}
@String{pub-WILEY:adr = "New York, NY, USA"}
@String{pub-WILEY-INTERSCIENCE = "Wiley-In{\-}ter{\-}sci{\-}ence"}
@String{pub-WILEY-INTERSCIENCE:adr = "New York, NY, USA"}
@String{pub-WORLD-SCI = "World Scientific Publishing
Co. Pte. Ltd."}
@String{pub-WORLD-SCI:adr = "P. O. Box 128, Farrer Road,
Singapore 9128"}
%%% ====================================================================
%%% Bibliography entries.
@Book{Tukey:1977:EDA,
author = "John W. Tukey",
title = "Exploratory data analysis",
publisher = pub-AW,
address = pub-AW:adr,
pages = "xvi + 688",
year = "1977",
ISBN = "0-201-07616-0",
ISBN-13 = "978-0-201-07616-5",
LCCN = "HA29 .T916 1977",
bibdate = "Tue Jun 01 15:28:00 1999",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
}
@Manual{Becker:1981:LSD,
author = "Richard A. Becker and John M. Chambers",
title = "{S}: {A} Language and System for Data Analysis",
organization = "AT\&T Bell Laboratories",
address = "Murray Hill, NJ, USA",
year = "1981",
LCCN = "QA76.7 .B43 1981",
bibdate = "Wed Aug 10 10:41:43 1994",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
}
@Book{Chambers:1983:GMD,
editor = "John M. Chambers and W. S. Cleveland and B. Kleiner
and P. A. Tukey",
title = "Graphical methods for data analysis",
publisher = pub-WADSWORTH,
address = pub-WADSWORTH:adr,
pages = "xiv + 395",
year = "1983",
ISBN = "0-534-98052-X",
ISBN-13 = "978-0-534-98052-8",
LCCN = "QA276.3 .G73 1983",
bibdate = "Thu Oct 20 05:31:00 MDT 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "The Wadsworth statistics/probability series",
acknowledgement = ack-nhfb,
keywords = "S",
subject = "Statistics; Graphic methods; Congresses; Computer
graphics; Congresses",
}
@Article{Becker:1984:DSD,
author = "R. A. Becker and J. M. Chambers",
title = "Design of the {S} System for Data Analysis",
journal = j-CACM,
volume = "27",
pages = "486--495",
month = may,
year = "1984",
CODEN = "CACMA2",
ISSN = "0001-0782 (print), 1557-7317 (electronic)",
ISSN-L = "0001-0782",
bibdate = "Tue Aug 16 23:35:52 1994",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
fjournal = "Communications of the ACM",
journal-URL = "http://portal.acm.org/browse_dl.cfm?idx=J79",
keywords = "statistics, and I3m Data Analysis",
}
@Book{Becker:1984:IED,
author = "Richard A. Becker and John M. Chambers",
title = "{S}: An Interactive Environment for Data Analysis and
Graphics",
publisher = pub-WADSWORTH,
address = pub-WADSWORTH:adr,
pages = "xii + 550",
year = "1984",
ISBN = "0-534-03313-X",
ISBN-13 = "978-0-534-03313-2",
LCCN = "QA76.73.S15 B44 1984",
bibdate = "Wed Aug 10 10:43:21 1994",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
}
@Article{Becker:1985:DSD,
author = "R. A. Becker and J. M. Chambers",
title = "Design of the {S} system for data analysis",
journal = j-ATT-TECH-J,
volume = "64",
number = "9",
pages = "2131--2151",
year = "1985",
CODEN = "ATJOEM",
ISSN = "8756-2324",
bibdate = "Fri Nov 12 13:09:16 2010",
bibsource = "Compendex database;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
abstract = "S is a language and system for interactive data
analysis and graphics. It emphasizes interactive
analysis and graphics, ease of use, flexibility, and
extensibility. While sharing many characteristics with
other statistical systems, S differs significantly in
its design goals, its implementation, and the way it is
used. The author presents some of the design concepts
and implementation techniques in S and relates these
general ideas in computing to the specific design goals
for S and to other statistical systems.",
acknowledgement = ack-nhfb,
fjournal = "AT\&T Technical Journal",
journal-URL = "http://onlinelibrary.wiley.com/journal/10.1002/(ISSN)1538-7305/issues/",
keywords = "computer graphics; data analysis; high level
languages; interactive systems",
subject = "data analysis; S; language; interactive data analysis;
graphics; ease of use; flexibility; extensibility;
statistical systems",
}
@Book{Becker:1985:ESS,
author = "Richard A. Becker and John M. Chambers",
title = "Extending the {S} System",
publisher = pub-WADSWORTH,
address = pub-WADSWORTH:adr,
pages = "viii + 166",
year = "1985",
ISBN = "0-534-05016-6",
ISBN-13 = "978-0-534-05016-0",
LCCN = "QA276.4 .B4241 1985",
bibdate = "Wed Aug 10 10:38:24 1994",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
}
@Book{Cleveland:1985:EGD,
author = "William S. Cleveland",
title = "The elements of graphing data",
publisher = pub-WADSWORTH,
address = pub-WADSWORTH:adr,
pages = "xii + 323",
year = "1985",
ISBN = "0-534-03730-5 (paperback)",
ISBN-13 = "978-0-534-03730-7 (paperback)",
LCCN = "QA90 .C54 1985",
bibdate = "Thu Oct 20 05:36:46 MDT 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
price = "US\$18.95",
acknowledgement = ack-nhfb,
keywords = "S",
subject = "Graphic methods",
}
@Book{MathSoft:1985:PUG,
author = "{MathSoft, Inc.}",
title = "{S-PLUS} User's Guide: Version 3.3 for {Windows}",
publisher = pub-STATSCI,
address = pub-STATSCI:adr,
pages = "various",
month = sep,
year = "1985",
ISBN = "",
ISBN-13 = "",
LCCN = "",
bibdate = "Tue Jan 28 14:18:45 1997",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
}
@Book{Devroye:1986:NUR,
author = "Luc Devroye",
title = "Non-uniform random variate generation",
publisher = pub-SV,
address = pub-SV:adr,
pages = "xvi + 843",
year = "1986",
ISBN = "0-387-96305-7",
ISBN-13 = "978-0-387-96305-1",
LCCN = "QA274 .D48 1986",
bibdate = "Tue Jun 01 15:12:57 1999",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
price = "US\$54.00",
acknowledgement = ack-nhfb,
}
@Book{Ripley:1987:SS,
author = "B. D. Ripley",
title = "Stochastic Simulation",
publisher = pub-WILEY,
address = pub-WILEY:adr,
pages = "xi + 237",
year = "1987",
ISBN = "0-471-81884-4",
ISBN-13 = "978-0-471-81884-7",
ISSN = "0271-6356",
LCCN = "QA76.9.C65 R571 1987",
bibdate = "Tue Jun 01 15:21:00 1999",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
price = "US\$29.95",
series = "Wiley series in probability and mathematical
statistics. Applied probability and statistics",
acknowledgement = ack-nhfb,
}
@Book{Becker:1988:NPL,
author = "Richard A. Becker and John M. Chambers and Allan R.
Wilks",
title = "The New {S} Programming Language",
publisher = pub-WADSWORTH # " and " # pub-BROOKS-COLE,
address = pub-WADSWORTH:adr # " and " # pub-BROOKS-COLE:adr,
pages = "xvii + 702",
year = "1988",
ISBN = "0-534-09192-X",
ISBN-13 = "978-0-534-09192-7",
LCCN = "QA76.73.S15 B43 1988",
bibdate = "Wed Aug 10 17:37:02 1994",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
}
@Article{Azzalini:1990:LSD,
author = "A. Azzalini and A. W. Bowman",
title = "A look at some data on the {Old Faithful Geyser}",
journal = j-APPL-STAT,
volume = "39",
number = "3",
pages = "357--365",
year = "1990",
CODEN = "APSTAG",
ISSN = "0035-9254 (print), 1467-9876 (electronic)",
ISSN-L = "0035-9254",
bibdate = "Tue Jun 01 14:58:18 1999",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
fjournal = "Applied Statistics",
journal-URL = "http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1467-9876/issues",
}
@Book{Hardle:1991:STI,
author = "Wolfgang H{\"a}rdle",
title = "Smoothing Techniques: with Implementation in {S}",
publisher = pub-SV,
address = pub-SV:adr,
pages = "xi + 261",
year = "1991",
ISBN = "0-387-97367-2 (New York), 3-540-97367-2 (Berlin)",
ISBN-13 = "978-0-387-97367-8 (New York), 978-3-540-97367-6
(Berlin)",
LCCN = "QA278 .H348 1990",
bibdate = "Tue Jun 01 14:54:36 1999",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
}
@Article{Lubinsky:1991:CTF,
author = "David J. Lubinsky",
title = "Comment: Two Functional Programming Environments for
Statistics --- {Lisp-Stat} and {S}",
journal = j-STAT-SCI,
volume = "6",
number = "4",
pages = "352--360",
month = nov,
year = "1991",
CODEN = "STSCEP",
ISSN = "0883-4237",
ISSN-L = "0883-4237",
bibdate = "Fri May 30 12:48:33 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/statsci.bib",
URL = "http://projecteuclid.org/euclid.ss/1177011575",
acknowledgement = ack-nhfb,
fjournal = "Statistical Science",
journal-URL = "http://projecteuclid.org/all/euclid.ss",
}
@Manual{MathSoft:1992:PPM,
title = "{S-PLUS} Programmer's Manual",
organization = pub-STATSCI,
address = pub-STATSCI:adr,
edition = "Version 3.1",
pages = "various",
month = oct,
year = "1992",
bibdate = "Tue May 07 14:38:42 1996",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
}
@Manual{MathSoft:1992:PUM,
title = "{S-PLUS} User's Manual Supplement",
organization = pub-STATSCI,
address = pub-STATSCI:adr,
edition = "Version 3.1",
pages = "various",
month = oct,
year = "1992",
bibdate = "Tue May 07 14:38:42 1996",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
}
@TechReport{Miller:1992:SNS,
author = "A. J. Miller",
title = "Some notes on statistical packages for {PCs}",
institution = "CSIRO Division of Mathematics \& Statistics",
address = "Melbourne, Australia",
pages = "55",
month = oct,
year = "1992",
bibdate = "Thu Apr 19 05:52:50 2001",
bibsource = "ftp://ftp.math.utah.edu/pub/mirrors/ftp.ira.uka.de/bibliography/Misc/allison.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
keywords = "language; maths; package; S; S+; S-plus; SAS; Splus;
stats; survey",
}
@InProceedings{Rowlingson:1992:SSP,
author = "B. S. Rowlingson and P. J. Diggle",
editor = "P. Bresnahan and E. Corwin and D. Cowen",
booktitle = "Proceedings: 5th International Symposium on Spatial
Data Handling: August 3--7, 1992, Charleston, SC, USA",
title = "{Splancs}: Spatial Point Pattern Analysis Code in
{S-Plus}",
volume = "2",
publisher = "Humanities and Social Sciences Computing Lab,
University of South Carolina",
address = "Charleston, SC, USA",
bookpages = "xiv + 725",
pages = "713--722",
year = "1992",
ISBN = "0-9633532-0-9 (vol. 1), 0-9633532-1-7 (vol. 2),
0-9633532-2-5 (set)",
ISBN-13 = "978-0-9633532-0-7 (vol. 1), 978-0-9633532-1-4 (vol.
2), 978-0-9633532-2-1 (set)",
bibdate = "Thu Apr 19 06:05:40 2001",
bibsource = "ftp://ftp.math.utah.edu/pub/mirrors/ftp.ira.uka.de/bibliography/Database/GIS/sdh92.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
note = "Two volumes.",
abstract = "In this paper we present a package of routines written
in the S language and Fortran for the analysis of
spatial point patterns. A large body of techniques
exists for analyzing point patterns, but there is no
integrated framework in which these techniques can be
applied. We have used the commercial package, S-Plus,
to create such an environment. S-Plus's flexible,
extensible nature makes it easy to integrate spatial
point pattern analysis routines. We do not lose any of
the powerful functionality of S-Plus. Analysis of
spatial point patterns is described by many authors,
for example (Diggle, 1983) and (Ripley, 1981). We have
implemented some of the methods described there as well
as newer techniques in the field. Specific functions
have been written for: point data definition and
display; geometrical point/polygon overlay functions;
point pattern summary statistics; point pattern
simulations and Monte-Carlo tests. We have constructed
a practical tool for the development of new spatial
statistical methods and the analysis of data. This
paper is a condensed version of Rowlingson and Diggle
(1991a), which contains further examples and complete
listing of the help pages and code for Splancs.",
}
@Book{Sibuya:1992:DAU,
author = "M. Sibuya and R. Shibata",
title = "Data Analysis by Using {S}",
publisher = "Kyouritsu Syppan",
address = "????, Japan",
pages = "????",
year = "1992",
ISBN = "????",
ISBN-13 = "????",
LCCN = "????",
bibdate = "Tue Jun 01 15:24:29 1999",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
}
@Book{Chambers:1993:SMS,
editor = "John M. Chambers and Trevor J. Hastie",
title = "Statistical Models in {S}",
publisher = pub-CHAPMAN-HALL # " and " # pub-WADSWORTH,
address = pub-CHAPMAN-HALL:adr # " and " # pub-WADSWORTH:adr,
pages = "xv + 608",
year = "1993",
ISBN = "0-412-05301-2 (Chapman and Hall), 0-534-16765-9
(Wadsworth paperback), 0-534-16764-0 (Wadsworth
hardcover)",
ISBN-13 = "978-0-412-05301-6 (Chapman and Hall),
978-0-534-16765-3 (Wadsworth paperback),
978-0-534-16764-6 (Wadsworth hardcover)",
LCCN = "QA276.4 .S65 1992",
bibdate = "Wed Aug 10 10:31:05 1994",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
price = "US\$40.95",
acknowledgement = ack-nhfb,
}
@Book{Cleveland:1993:VD,
author = "William S. Cleveland",
title = "Visualizing Data",
publisher = "Hobart Press",
address = "Summit, NJ, USA",
pages = "360",
year = "1993",
ISBN = "0-9634884-0-6",
ISBN-13 = "978-0-9634884-0-4",
LCCN = "QA276.3.C57 1993",
bibdate = "Tue Jun 01 15:10:42 1999",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
price = "US\$50.00",
acknowledgement = ack-nhfb,
}
@Article{Hallman:1993:RP,
author = "J. Hallman",
title = "Review of {S-PLUS}",
journal = j-J-APPL-ECONOMETRICS,
volume = "8",
number = "2",
pages = "213--219",
month = apr,
year = "1993",
CODEN = "JAECET",
DOI = "http://dx.doi.org/10.1002/jae.3950080208",
ISSN = "0883-7252 (print), 1099-1255 (electronic)",
ISSN-L = "0883-7252",
bibdate = "Mon Feb 5 11:41:22 MST 1996",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
fjournal = "Journal of Applied Econometrics",
onlinedate = "7 Nov 2006",
xxpages = "213--220",
}
@InProceedings{LoPresti:1993:IOP,
author = "C. A. {Lo Presti}",
title = "Implementation of the Object-Oriented Paradigm in
{S-Plus}",
crossref = "IEEE:1993:NCR",
pages = "186--191",
year = "1993",
bibdate = "Tue May 7 12:13:22 MDT 1996",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
}
@Book{Marazzi:1993:ARF,
author = "Alfio Marazzi and Johann Joss and Alex
Randriamiharisoa",
title = "Algorithms, Routines, and {S} Functions for Robust
Statistics: The {FORTRAN} Library {ROBETH} with an
Interface to {S-PLUS}",
publisher = pub-WADSWORTH # " and " # pub-BROOKS-COLE,
address = pub-WADSWORTH:adr # " and " # pub-BROOKS-COLE:adr,
pages = "xii + 436",
year = "1993",
ISBN = "0-534-19698-5",
ISBN-13 = "978-0-534-19698-1",
LCCN = "QA276.4 .M267 1993",
bibdate = "Sun Sep 28 10:42:07 MDT 1997",
bibsource = "http://www.amazon.com/exec/obidos/ISBN=0534196985/wholesaleproductA/;
http://www.cbooks.com/;
http://www.math.utah.edu/pub/tex/bib/fortran3.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
price = "US\$69.50",
URL = "http://www.cbooks.com/sqlnut/SP/search/gtsumt?source=&isbn=0534196985",
acknowledgement = ack-nhfb,
keywords = "robeth; robust statistics -- data processing",
}
@Manual{MathSoft:1993:CCP,
title = "A Crash Course in {S-PLUS}",
organization = pub-STATSCI,
address = pub-STATSCI:adr,
edition = "Version 3.2",
pages = "various",
month = dec,
year = "1993",
bibdate = "Tue May 07 14:34:29 1996",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
}
@Manual{MathSoft:1993:GIP,
title = "A Gentle Introduction to {S-PLUS}",
organization = pub-STATSCI,
address = pub-STATSCI:adr,
edition = "Version 3.2",
pages = "various",
month = dec,
year = "1993",
bibdate = "Tue May 07 14:34:29 1996",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
}
@Manual{MathSoft:1993:IMM,
title = "{S-PLUS} Installation and Maintenance Manual",
organization = pub-STATSCI,
address = pub-STATSCI:adr,
edition = "Version 3.2",
pages = "various",
month = dec,
year = "1993",
bibdate = "Tue May 07 14:34:29 1996",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
}
@Manual{MathSoft:1993:PGS,
title = "{S-PLUS} Guide to Statistical and Mathematical
Analysis",
organization = pub-STATSCI,
address = pub-STATSCI:adr,
edition = "Version 3.2",
pages = "various",
month = dec,
year = "1993",
bibdate = "Tue May 07 12:10:01 1996",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
}
@Manual{MathSoft:1993:PPM,
title = "{S-PLUS} Programmer's Manual",
organization = pub-STATSCI,
address = pub-STATSCI:adr,
edition = "Version 3.2",
pages = "various",
month = dec,
year = "1993",
bibdate = "Tue May 07 12:10:01 1996",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
}
@Manual{MathSoft:1993:PUM,
title = "{S-PLUS} User's Manual",
organization = pub-STATSCI,
address = pub-STATSCI:adr,
edition = "Version 3.2",
pages = "various",
month = dec,
year = "1993",
bibdate = "Tue May 07 12:10:01 1996",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
}
@Article{Rowlingson:1993:SSP,
author = "B. S. Rowlingson and P. J. Diggle",
title = "{Splancs}: spatial point pattern analysis code in
{S-Plus}",
journal = j-COMP-GEOSCI,
volume = "19",
number = "5",
pages = "627--655",
month = may,
year = "1993",
CODEN = "CGOSDN",
ISSN = "0098-3004 (print), 1873-7803 (electronic)",
ISSN-L = "0098-3004",
MRnumber = "93J-12038",
bibdate = "Mon Feb 5 11:41:22 MST 1996",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
affiliation = "Mathematics Dept, Lancaster Univ, Lancaster LA1 4YF,
UK",
fjournal = "Computers and Geosciences",
keywords = "GIS; point pattern analysis; spatial statistics",
}
@Manual{StatSci:1993:CCP,
title = "A Crash Course in {S-PLUS}",
organization = pub-STATSCI,
address = pub-STATSCI:adr,
pages = "various",
month = dec,
year = "1993",
bibdate = "Wed Mar 12 15:14:41 1997",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
}
@Manual{StatSci:1993:GIP,
title = "A Gentle Introduction to {S-PLUS}, Version 3.2",
organization = pub-STATSCI,
address = pub-STATSCI:adr,
pages = "various",
month = dec,
year = "1993",
bibdate = "Wed Mar 12 15:14:41 1997",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
}
@Manual{StatSci:1993:PGS,
title = "{S-PLUS} Guide to Statistical and Mathematical
Analysis, Version 3.2",
organization = pub-STATSCI,
address = pub-STATSCI:adr,
pages = "various",
month = dec,
year = "1993",
bibdate = "Wed Mar 12 15:14:41 1997",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
}
@Manual{StatSci:1993:PPM,
title = "{S-PLUS} Programmer's Manual, Version 3.2",
organization = pub-STATSCI,
address = pub-STATSCI:adr,
pages = "various",
month = dec,
year = "1993",
bibdate = "Wed Mar 12 15:14:41 1997",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
}
@Manual{StatSci:1993:PUM,
title = "{S-PLUS} User's Manual, Version 3.2",
organization = pub-STATSCI,
address = pub-STATSCI:adr,
pages = "various",
month = dec,
year = "1993",
bibdate = "Wed Mar 12 15:14:41 1997",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
}
@Book{Suselbeck:1993:PEP,
author = "Benno S{\"u}selbeck",
title = "{S und S-PLUS: Eine Einf{\"u}hrung in Programmierung
und Anwendung}",
publisher = "Fischer",
address = "Stuttgart, Germany",
pages = "xii + 602",
year = "1993",
ISBN = "3-437-40232-3",
ISBN-13 = "978-3-437-40232-6",
LCCN = "????",
bibdate = "Tue Jun 01 15:26:27 1999",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
}
@InProceedings{Becker:1994:BH,
author = "R. A. Becker",
title = "A Brief History of {S}",
crossref = "Dirschedl:1994:CSP",
pages = "81--110",
year = "1994",
bibdate = "Tue Jun 01 15:03:07 1999",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
}
@Book{Cleveland:1994:EGD,
author = "William S. Cleveland",
title = "The elements of graphing data",
publisher = "AT\&T Bell Laboratories",
address = "Murray Hill, NJ, USA",
edition = "Revised",
pages = "297",
year = "1994",
ISBN = "0-9634884-1-4 (cloth)",
ISBN-13 = "978-0-9634884-1-1 (cloth)",
LCCN = "QA90 .C54 1994",
bibdate = "Thu Oct 20 05:36:46 MDT 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
acknowledgement = ack-nhfb,
keywords = "S-Plus",
subject = "Graphic methods",
}
@Book{Everitt:1994:HSA,
author = "Brian S. Everitt",
title = "A Handbook of Statistical Analyses using {S-PLUS}",
publisher = pub-CHAPMAN-HALL,
address = pub-CHAPMAN-HALL:adr,
pages = "viii + 143",
year = "1994",
ISBN = "0-412-56310-X",
ISBN-13 = "978-0-412-56310-2",
LCCN = "QA276.4.E93 1994",
bibdate = "Tue Jun 01 15:14:23 1999",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
}
@TechReport{Farrell:1994:HDB,
author = "W. E. Farrell and J. Gaffney and J. Given and R. D.
Jenkins and N. Hall",
title = "A Hydrographic Database built on {Montage} and
{S-PLUS}",
type = "Technical Report",
number = "S2K-94-47",
institution = "University of California, Berkeley",
address = "Berkeley, CA, USA",
pages = "31",
month = mar,
year = "1994",
bibdate = "Thu Apr 19 05:56:30 2001",
bibsource = "ftp://ftp.math.utah.edu/pub/mirrors/ftp.ira.uka.de/bibliography/Techreports/NCSTRL/UCB.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
abstract = "A powerful software environment for research can be
created by combining database management systems and
commercial software for analysis and display of data.
This provides a richer programming environment and more
sophisticated graphical possibilities than are offered
by present database systems. It provides a data storage
and retrieval system that adheres to a standard syntax,
SQL, and which is more robust than file-based
approaches. Only recently has it become possible to
combine these two kinds of software but increasingly
database and scientific application software has the
open architecture that is conducive to the data sharing
that makes such combinations possible. New database
systems also accommodate the complex types of data of
interest to scientists. We have a way to link
appropriate database software and scientific
application software which is called the Generic
Database Interface (GDI). In essence, it consists of a
core set of functions, complemented by product-specific
interface code which is unique to each database product
and each application product. The GDI provides the
mechanism for both submitting a SQL query to any
supported database and also handling the data that are
exchanged in satisfaction of the query. We illustrate
the strength of this approach by applying it to tasks
involving selection and display of ocean temperature
data using the Montage database management system and
the S-PLUS statistics application. The examples
illustrate a few of the novel capabilities of this
approach; they do not comprise a complete data
processing application.",
}
@Misc{Gersten:1994:PAI,
author = "R. Carey Gersten",
title = "{S-PLUS} for {ARC\slash INFO}: your link to a powerful
statistical view",
publisher = pub-STATSCI,
address = pub-STATSCI:adr,
year = "1994",
LCCN = "G70.2 .S65 1994 VIDEO/C Reserve",
bibdate = "Tue Feb 20 11:55:12 MST 2001",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
note = "Credits: Producer, R. Carey Gersten. Demonstrates the
advantages of combining the ARC/INFO computer program
with S-PLUS, as a means of GIS analysis to provide more
productive and insightful spatial analysis and
statistical modeling. Applications are broad including
natural resource planning, business geodemographic
analysis and urban and rural planning.",
acknowledgement = ack-nhfb,
keywords = "ARC/INFO (computer program); geographic information
systems; geography -- data processing; information
storage and retrieval systems -- geography; S-PLUS
(computer program)",
}
@InProceedings{LoPresti:1994:IOO,
author = "C. A. {Lo Presti}",
title = "Implementation of the Object Oriented Paradigm in
{S-Plus}",
crossref = "IEEE:1994:NCR",
pages = "170--177",
year = "1994",
bibdate = "Tue May 7 12:13:22 MDT 1996",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
}
@Misc{MathSoft:1994:PAI,
author = "{MathSoft, Inc.}",
title = "{S-PLUS} for {ARC\slash INFO}: your link to a powerful
statistical view",
howpublished = "Video recording (12 min.) plus text (48 p.).",
publisher = pub-STATSCI,
address = pub-STATSCI:adr,
year = "1994",
bibdate = "Tue Jan 28 14:17:05 1997",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
}
@Book{Spector:1994:IP,
author = "Phil Spector",
title = "An Introduction to {S} and {S-Plus}",
publisher = pub-DUXBURY,
address = pub-DUXBURY:adr,
pages = "xiii + 286",
year = "1994",
ISBN = "0-534-19866-X",
ISBN-13 = "978-0-534-19866-4",
LCCN = "QA76.73.S15 S63 1994",
bibdate = "Wed Aug 10 13:40:49 1994",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
price = "US\$28.95",
acknowledgement = ack-nhfb,
keywords = "S (computer programming language)",
}
@Book{Venables:1994:MAS,
author = "William N. Venables and Brian D. Ripley",
title = "Modern Applied Statistics with {S-PLUS}",
publisher = pub-SV,
address = pub-SV:adr,
pages = "xii + 462",
year = "1994",
ISBN = "0-387-94350-1 (New York), 3-540-94350-1 (Berlin)",
ISBN-13 = "978-0-387-94350-3 (New York), 978-3-540-94350-1
(Berlin)",
LCCN = "QA276.4 .V46 1994",
bibdate = "Tue May 07 12:49:41 1996",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
}
@InProceedings{Wolfe:1994:GOR,
author = "M. A. Wolfe",
title = "On Global Optimization in {R} Using Interval
Arithmetic",
crossref = "Bianco:1994:MAM",
pages = "61--76",
year = "1994",
bibdate = "Mon Oct 20 07:16:07 MDT 1997",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
}
@InProceedings{Anonymous:1995:S,
author = "Anonymous",
title = "{S-PLUS}",
crossref = "Bartley:1995:FET",
pages = "299--299",
year = "1995",
bibdate = "Tue May 7 12:13:22 MDT 1996",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
}
@Article{Calaway:1995:OOP,
author = "Richard Calaway",
title = "Object-Oriented Programming in {S}",
journal = j-DDJ,
volume = "20",
number = "10",
pages = "44, 46, 48--49, 51, 113--115",
month = oct,
year = "1995",
CODEN = "DDJOEB",
ISSN = "1044-789X",
bibdate = "Thu Jan 9 09:35:43 MST 1997",
bibsource = "Compendex database;
http://www.ddj.com/index/author/index.htm;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
classification = "723.1; 723.1.1; 723.2; 723.3; 922.2; C6110J
(Object-oriented programming); C6120 (File
organisation); C6140D (High level languages)",
fjournal = "Dr. Dobb's Journal of Software Tools",
journalabr = "Dr Dobb's J Software Tools Prof Program",
keywords = "Browser function; Character sets; Classes; Computer
software; Data analysis; Data reduction; Data
structures; Database systems; Default; Functions;
Generic function; Generic functions; Graphics; Group
methods; High level languages; High level object
oriented language; Object oriented programming;
Object-oriented programming; Regression analysis;
Replacement methods; S (programming language); S
language; S-Plus classes; Statistical tests; Systems
analysis; Time series analysis",
pagecount = "5",
thesaurus = "Abstract data types; Complete computer programs;
Object-oriented languages; Object-oriented
programming",
}
@TechReport{Chambers:1995:OV,
author = "J. M. Chambers",
title = "Overview of Version 4 of {S}",
institution = "AT\&T Bell Laboratories",
address = "Murray Hill, NJ, USA",
day = "23",
month = jan,
year = "1995",
bibdate = "Tue Jun 01 15:09:33 1999",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
}
@TechReport{Clement:1995:DPP,
author = "Mark J. Clement and Michael J. Quinn",
title = "Dynamic Performance Prediction For Scalable Parallel
Computing",
type = "Technical Report",
number = "95-80-04",
institution = "Oregon State University",
address = "Corvallis, OR, USA",
year = "1995",
bibdate = "Thu Apr 19 05:54:59 2001",
bibsource = "ftp://ftp.math.utah.edu/pub/mirrors/ftp.ira.uka.de/bibliography/Techreports/NCSTRL/ORST.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
abstract = "Performance prediction is necessary in order to deal
with multi-dimensional performance effects on parallel
systems. The compiler-generated analytical model
developed in this paper accounts for the effects of
cache behavior, CPU execution time and message passing
overhead for real programs written in high level
data-parallel languages. The performance prediction
technique is shown to be effective in analyzing several
non-trivial applications as the problem size and number
of processors vary. We leverage technology from the
maple symbolic manipulation system and the S-PLUS
statistical package in order to present users with
critical performance information necessary for
performance debugging, architectural enhancement and
procurement of parallel systems. The usability of these
results is improved through specifying confidence
intervals as well as predicted execution times for
parallel applications. Cost optimal analysis techniques
are also developed using the symbolic equations for
execution time.",
}
@Article{Grunsky:1995:PTD,
author = "Eric Grunsky",
title = "{S-PLUS} Trellis Displays",
journal = j-COMP-GEOSCI,
volume = "21",
number = "7",
pages = "917--??",
year = "1995",
CODEN = "CGOSDN",
ISSN = "0098-3004 (print), 1873-7803 (electronic)",
ISSN-L = "0098-3004",
bibdate = "Mon Feb 5 11:41:22 MST 1996",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
fjournal = "Computers and Geosciences",
}
@Article{Ko:1995:BRBa,
author = "Daijin Ko",
title = "Book Review: {{\booktitle{An Introduction to S and
S-Plus}} by Phil Spector}",
journal = j-TECHNOMETRICS,
volume = "37",
number = "2",
pages = "232--232",
month = may,
year = "1995",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/1269629",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:20:08 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i254361;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics1990.bib",
URL = "http://www.jstor.org/stable/1269629",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Article{Ko:1995:BRBb,
author = "Daijin Ko",
title = "Book Review: {{\booktitle{A Handbook of Statistical
Analyses Using S-Plus}} by Brian S. Everitt}",
journal = j-TECHNOMETRICS,
volume = "37",
number = "2",
pages = "232--233",
month = may,
year = "1995",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/1269630",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:20:08 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i254361;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics1990.bib",
URL = "http://www.jstor.org/stable/1269630",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Article{Krause:1995:ESS,
author = "Andreas Krause",
title = "Electronic Services in Statistics",
journal = "Statistical Software Newsletter in Computational
Statistics and Data Analysis",
volume = "19",
number = "5",
pages = "595--604",
year = "1995",
CODEN = "CSDADW",
ISSN = "0167-9473 (print), 1872-7352 (electronic)",
bibdate = "Tue Jun 01 15:18:14 1999",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.genedata.com/~andreas/internet/internet.html",
acknowledgement = ack-nhfb,
}
@InProceedings{Langston:1995:CMR,
author = "R. Langston",
title = "A Comparison of the {MODULE} routines with {S-PLUS}
Extensibility",
crossref = "Anonymous:1995:ACA",
pages = "1402--1405",
year = "1995",
bibdate = "Tue May 7 12:13:22 MDT 1996",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
}
@TechReport{Olsen:1995:SCH,
author = "N. H. Olsen and Pacific Biological Station",
title = "Software to complement {HTI}'s model 240 split-beam
echosounder: a user's guide to {HAFU} (Hydro-Acoustic
File Utilities) and {QTS} ({Qualark Tools for
S-Plus})",
type = "Technical report",
number = "2037",
institution = "Fisheries and Oceans, Canada",
address = "Nanaimo, BC, Canada",
pages = "vii + 45",
year = "1995",
ISSN = "0706-6457",
bibdate = "Tue Sep 22 08:25:09 MDT 1998",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
series = "Canadian technical report of fisheries and aquatic
sciences",
acknowledgement = ack-nhfb,
annote = "Microfiche. [Ottawa]: [Minister of Supply and Services
Canada], 1995. 1 microfiche: negative.",
govtdocnumber = "DSS Cat. no. Fs 97-6/2037E",
}
@Article{Schulman:1995:DAU,
author = "Daniel A. Schulman and Alec D. Campbell and Eric C.
Kostello",
title = "Data Analysis Using {S-Plus}",
journal = j-SOC-METH-RES,
volume = "23",
number = "3",
pages = "392--??",
month = feb,
year = "1995",
ISSN = "0049-1241 (print), 1552-8294 (electronic)",
ISSN-L = "0049-1241",
bibdate = "Mon Feb 5 11:41:22 MST 1996",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
fjournal = "Sociological Methods and Research",
}
@Manual{StatSci:1995:PGI,
title = "{S-PLUS} Global Index",
organization = pub-STATSCI,
address = pub-STATSCI:adr,
pages = "various",
month = apr,
year = "1995",
bibdate = "Wed Mar 12 15:14:41 1997",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
}
@Manual{StatSci:1995:PIM,
title = "{S-PLUS} Installation and Maintenance Manual, Version
3.3",
organization = pub-STATSCI,
address = pub-STATSCI:adr,
pages = "various",
month = apr,
year = "1995",
bibdate = "Wed Mar 12 15:14:41 1997",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
}
@Manual{StatSci:1995:PTD,
title = "{S-PLUS} {Trellis} Displays User's Manual, Version
3.3",
organization = pub-STATSCI,
address = pub-STATSCI:adr,
pages = "various",
month = apr,
year = "1995",
bibdate = "Wed Mar 12 15:14:41 1997",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
}
@Manual{StatSci:1995:PVS,
title = "{S-PLUS} Version 3.3 Supplement",
organization = pub-STATSCI,
address = pub-STATSCI:adr,
pages = "various",
month = apr,
year = "1995",
bibdate = "Wed Mar 12 15:14:41 1997",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
}
@Manual{StatSci:1995:RMF,
title = "Read Me First, Version 3.3",
organization = pub-STATSCI,
address = pub-STATSCI:adr,
pages = "ii + 24",
month = apr,
year = "1995",
bibdate = "Wed Mar 12 15:14:41 1997",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
}
@Misc{StatSci:1995:S,
author = "{Statistical Sciences, Inc}",
title = "{S-Plus}",
publisher = pub-STATSCI,
address = pub-STATSCI:adr,
edition = "Version 3.3 for X-windows.",
year = "1995",
bibdate = "Tue Sep 22 08:25:09 MDT 1998",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
annote = "Software available to licenced users via FTP. Manuals
include: Gentle introduction to S-Plus. Version 3.2; S-
PLUS version 3.3 supplement; Read me first; S-Plus
programmer's manual. Version 3.2; S-Plus trellis
displays User's manual; S- Plus global index; A crash
course in S-Plus. Version 3.2; S-Plus guide to
statistical and mathematical analysis. Version 3.2; S-
Plus user's manual. Version 3.2. Graphical data
analysis system and object-oriented programming
language. System requirements: SUN Sparc, IBM RS/6000,
Hewlett--Packard 9000- 700, Silicon Graphics IRIS,
DECstation, DEC Alpha/OSF; 16 MB of RAM; Hard disk with
55 MB of free disk space; UNIX graphics devices
support: X-Window system (Motif or OPEN LOOK), various
graphics terminals; line printer/character graphics;
hardcopy: PostScript, HP Laserjet, HPGL, color
PostScript pixel image graphics.",
keywords = "Mathematical statistics -- Computer programs.",
}
@Manual{StatSci:1995:SUM,
title = "{S-PLUS} user's manual",
organization = pub-STATSCI,
address = pub-STATSCI:adr,
edition = "Version 3.3.",
pages = "various",
month = sep,
year = "1995",
bibdate = "Tue Sep 22 08:25:09 MDT 1998",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
alttitle = "S PLUS user's manual",
keywords = "Mathematical statistics -- Computer programs; S-Plus",
}
@MastersThesis{Yang:1995:RMV,
author = "Ying Yang",
title = "Random-effects model validation: a program package
using a {FORTRAN} program ({REML}) and {S-plus}",
type = "Thesis ({M.S.})",
school = "Graduate School of Public Health, University of
Pittsburgh",
address = "Pittsburgh, PA, USA",
pages = "v + 126",
year = "1995",
bibdate = "Tue Sep 22 08:25:09 MDT 1998",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
}
@Article{Anonymous:1996:SBP,
author = "Anonymous",
title = "{S+SpatialStats} builds on {S-Plus} technology",
journal = j-SILICON-GRAPHICS-WORLD,
volume = "6",
number = "6",
pages = "15--15",
month = jun,
year = "1996",
ISSN = "1057-7041",
bibdate = "Mon Jun 03 11:44:12 1996",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
fjournal = "Silicon Graphics World",
}
@Book{Bartoszynski:1996:PSI,
author = "Robert Bartoszy{\'n}ski and Magdalena
Niewiadomska-Bugaj",
title = "Probability and statistical inference",
publisher = pub-WILEY,
address = pub-WILEY:adr,
pages = "xvi + 826",
year = "1996",
ISBN = "0-471-31073-5 (cloth)",
ISBN-13 = "978-0-471-31073-0 (cloth)",
LCCN = "QA273 .B2584 1996",
bibdate = "Wed Sep 15 11:27:49 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Wiley series in probability and statistics",
URL = "http://www.loc.gov/catdir/description/wiley031/96004105.html;
http://www.loc.gov/catdir/enhancements/fy0806/96004105-b.html;
http://www.loc.gov/catdir/toc/onix01/96004105.html",
acknowledgement = ack-nhfb,
remark = "See also second edition
\cite{Bartoszynski:2007:PSI}.",
subject = "probabilities; mathematical statistics",
}
@Article{Becker:1996:VDC,
author = "R. A. Becker and W. S. Cleveland and M.-J. Shyu",
title = "The Visual Design and Control of Trellis Display",
journal = j-J-COMPUT-GRAPH-STAT,
volume = "5",
number = "2",
pages = "123--155",
year = "1996",
ISSN = "1061-8600 (print), 1537-2715 (electronic)",
ISSN-L = "1061-8600",
bibdate = "Tue Jun 01 15:00:30 1999",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
fjournal = "Journal of Computational and Graphical Statistics",
journal-URL = "http://www.tandfonline.com/loi/ucgs20",
}
@Book{Bruce:1996:AWA,
author = "Andrew Bruce and Hong-Ye Gao",
title = "Applied wavelet analysis with {S-Plus}",
publisher = pub-SV,
address = pub-SV:adr,
pages = "xxi + 338",
year = "1996",
ISBN = "0-387-94714-0 (softcover)",
ISBN-13 = "978-0-387-94714-3 (softcover)",
LCCN = "TK5102.9.B78 1996",
bibdate = "Tue Sep 22 08:25:09 MDT 1998",
bibsource = "ftp://ftp.math.utah.edu/pub/mirrors/ftp.ira.uka.de/bibliography/Theory/Wavelets/brandon.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.springer-ny.com/catalog/np/jul96np/DATA/0-387-94714-0.html",
abstract = "This book introduces applied wavelet analysis through
the S-PLUS software system. Using a visual data
analysis approach, wavelet concepts are explained in a
way that is intuitive and easy to understand. In
addition to wavelets, a whole range of related signal
processing techniques such as wavelet packets, local
cosine analysis, and matching pursuits are covered.
Applications of wavelet analysis are illustrated,
including nonparametric function estimation, digital
image compression, and time-frequency signal analysis.
The book and software is intended for a broad range of
data analysts, scientists, and engineers. While most
textbooks on wavelet analysis require advanced training
in mathematics, this book minimizes reliance on formal
mathematical methods. Readers should be familiar with
calculus and linear algebra at the undergraduate
level.",
acknowledgement = ack-nhfb,
keywords = "Computer-aided engineering.; S (Computer program
language); Signal processing -- Mathematics; Wavelets
(Mathematics) -- Data processing",
}
@Article{Hilbe:1996:WFC,
author = "Joseph Hilbe",
title = "{Windows} File Conversion Software",
journal = j-AMER-STAT,
volume = "50",
number = "3",
pages = "268--??",
month = "????",
year = "1996",
CODEN = "ASTAAJ",
ISSN = "0003-1305 (print), 1537-2731 (electronic)",
ISSN-L = "0003-1305",
bibdate = "Mon May 5 07:48:12 MDT 1997",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
fjournal = "The American Statistician",
journal-URL = "http://www.tandfonline.com/loi/utas20",
}
@Book{Huet:1996:STN,
author = "S. (Sylvie) Huet and others",
title = "Statistical tools for nonlinear regression: a
practical guide with {S-PLUS} examples",
publisher = pub-SV,
address = pub-SV:adr,
pages = "ix + 154",
year = "1996",
ISBN = "0-387-94727-2",
ISBN-13 = "978-0-387-94727-3",
LCCN = "QA278.2.S73 1996",
bibdate = "Tue Sep 22 08:25:09 MDT 1998",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
series = "Springer series in statistics",
acknowledgement = ack-nhfb,
keywords = "Nonlinear theories; Parameter estimation.; Regression
analysis",
}
@Article{James:1996:BRB,
author = "David A. James",
title = "Book Review: {{\booktitle{Modern Applied Statistics
with S-PLUS}} by W. N. Venables; B. D. Ripley}",
journal = j-TECHNOMETRICS,
volume = "38",
number = "1",
pages = "77--78",
month = feb,
year = "1996",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/1268908",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:20:11 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i254364;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics1990.bib",
URL = "http://www.jstor.org/stable/1268908",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@InProceedings{Read:1996:BMU,
author = "Edith Read and Jennifer Gough",
booktitle = "Geography connects our world. Title: 1996 ESRI User
Conference: proceedings, May 20--24, 1996, Palm
Springs, CA",
title = "Beyond Mapping Using {GIS} for National Resource
Assessment and Analysis",
publisher = "Environmental Systems Research Institute",
address = "Redlands, CA, USA",
year = "1996",
LCCN = "G70.212 .E87 1996",
bibdate = "Thu Apr 19 06:07:43 2001",
bibsource = "ftp://ftp.math.utah.edu/pub/mirrors/ftp.ira.uka.de/bibliography/Database/GIS/esri96.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
abstract = "Many agencies and private companies now use GIS as a
tool for producing maps of wildlife habitats and other
natural resources. The next step in application of GIS
is data analysis to address issues of specific concern
to resource managers. We present three diverse examples
which show how GIS can be applied to relationships
between hydrological and biological resources. In the
first example, we show cation-anion characteristics of
spring water in the San Bernardino Mountains of
California. Plots of the data in the form of Stiff
diagrams clearly illustrate differences between
calcareous, hydrothermal waters along a fault line and
artesian waters that typify most of the sample sites.
Further study is needed to determine if such
differences help explain the patchy distribution of
certain wetland plant species within the San Bernardino
Mountains. In the second example, we show application
of GIS to vegetation transect and hydrological data
obtained as part of a long-term riparian monitoring
program in the Sierra Nevada of California.
Box-and-whisker plots of the data using S-Plus (StatSci
Division, Mathsoft, Inc., Seattle, Washington, USA)
prove especially useful in showing the distribution of
wetland indicators in relation to distance from stream.
The third example shows habitat analysis for the Santa
Ana River woolly star, an endangered plant species
whose life cycle is linked to flooding frequency and
diversity in successional stage of alluvial terraces
within the floodplain.",
xxISBN = "none",
}
@Book{Anonymous:1997:PLD,
author = "Anonymous",
title = "{S-PLUS: learning by doing; eine Anleitung zum
Arbeiten mit S-PLUS}",
publisher = "Lucius und Lucius",
address = "Stuttgart, Germany",
pages = "xii + 126",
year = "1997",
ISBN = "3-8282-0049-4",
ISBN-13 = "978-3-8282-0049-4",
LCCN = "????",
bibdate = "Fri May 21 10:32:51 MDT 1999",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
annote = "Mixed media.",
}
@Book{Bowman:1997:AST,
author = "Adrian W. Bowman and Adelchi Azzalini",
title = "Applied smoothing techniques for data analysis: the
kernel approach with {S-Plus} illustrations",
volume = "18",
publisher = pub-OXFORD,
address = pub-OXFORD:adr,
pages = "xi + 193",
year = "1997",
ISBN = "0-19-852396-3",
ISBN-13 = "978-0-19-852396-3",
LCCN = "QA278.B68 1997",
bibdate = "Tue Sep 22 08:25:09 MDT 1998",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
series = "Oxford statistical science series",
acknowledgement = ack-nhfb,
keywords = "Smoothing (Statistics)",
}
@Book{Davison:1997:BMT,
author = "A. C. (Anthony Christopher) Davison and D. V.
Hinkley",
title = "Bootstrap methods and their application",
publisher = pub-CAMBRIDGE,
address = pub-CAMBRIDGE:adr,
pages = "x + 582",
year = "1997",
ISBN = "0-521-57391-2 (hardcover), 0-521-57471-4 (paperback)",
ISBN-13 = "978-0-521-57391-7 (hardcover), 978-0-521-57471-6
(paperback)",
LCCN = "QA276.8 .D38 1997",
bibdate = "Tue Feb 20 11:55:12 MST 2001",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
series = "Cambridge series on statistical and probabilistic
mathematics",
acknowledgement = ack-nhfb,
keywords = "bootstrap (statistics); Splus for Windows",
}
@Book{Krause:1997:BP,
author = "Andreas Krause and Melvin Olson",
title = "The basics of {S} and {S-Plus}",
publisher = pub-SV,
address = pub-SV:adr,
pages = "xi + 242",
year = "1997",
ISBN = "0-387-94985-2",
ISBN-13 = "978-0-387-94985-7",
LCCN = "QA276.4 .K73 1997",
bibdate = "Tue Sep 22 08:16:22 1998",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
series = "Statistics and computing",
acknowledgement = ack-nhfb,
keywords = "Mathematical statistics -- Data processing.; S-Plus",
}
@Book{Krause:1997:EPA,
author = "Andreas Krause",
title = "{Einf{\"u}hrung in S und S-Plus: mit Aufgaben und
vollstandigen L{\"o}sungen}",
publisher = pub-SV,
address = pub-SV:adr,
pages = "xviii + 319",
year = "1997",
ISBN = "3-540-60932-6 (paperback)",
ISBN-13 = "978-3-540-60932-2 (paperback)",
LCCN = "????",
bibdate = "Tue Sep 22 08:25:09 MDT 1998",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
keywords = "Mathematical statistics -- Data processing.; S-Plus",
}
@MastersThesis{Lasecki:1997:PFF,
author = "Jennifer L. Lasecki",
title = "{S-Plus} functions and {Fortran} subroutines for
multiple comparison critical points",
type = "Thesis ({M.S.})",
school = "University of South Carolina",
address = "Columbia, SC, USA",
pages = "v + 68",
year = "1997",
bibdate = "Tue Sep 22 08:25:09 MDT 1998",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
}
@InProceedings{Martin:1997:PDI,
author = "R. Douglas Martin and Vikram Chalana",
title = "The {S-PLUS DataBlade} for {INFORMIX-Universal}
Server: The Natural Wedding of an Object Relational
Database with an Object-Oriented Data Analysis Engine",
crossref = "Hansen:1997:ICS",
pages = "126--130",
year = "1997",
bibdate = "Thu Apr 19 06:31:49 2001",
bibsource = "http://dblp.uni-trier.de/db/conf/ssdbm/ssdbm97.html#MartinC97;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://dblp.uni-trier.de/db/conf/ssdbm/MartinC97.html",
cdrom = "SSDBM97/P126.pdf",
oldlabel = "conf/ssdbm/MartinC97",
XMLdata = "ftp://ftp.informatik.uni-trier.de/pub/users/Ley/bib/records.tar.gz#conf/ssdbm/MartinC97",
}
@Article{Pillai:1997:MSD,
author = "Krishnakumar Pillai and V. S. Sukumaran Nair",
title = "A Model for Software Development Effort and Cost
Estimation",
journal = j-IEEE-TRANS-SOFTW-ENG,
volume = "23",
number = "8",
pages = "485--497",
month = aug,
year = "1997",
CODEN = "IESEDJ",
DOI = "http://dx.doi.org/10.1109/32.624305",
ISSN = "0098-5589 (print), 1939-3520 (electronic)",
ISSN-L = "0098-5589",
bibdate = "Thu Apr 19 05:59:09 2001",
bibsource = "ftp://ftp.math.utah.edu/pub/mirrors/ftp.ira.uka.de/bibliography/SE/SEPL.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
abstract = "Several algorithmic models have been proposed to
estimate software costs and other management
parameters. Early prediction of completion time is
absolutely essential for proper advance planning and
aversion of the possible ruin of a project. Putnam's
SLIM model offers a fairly reliable method that is used
extensively to predict project completion times and
manpower requirements as the project evolves. However,
the nature of the Norden/Rayleigh curve used by Putnam,
renders it unreliable during the initial phases of the
project, especially in projects involving a fast
manpower buildup, as is the case with most software
projects. In this paper, we propose the use of a model
that improves early prediction considerably over the
Putnam model. An analytic proof of the model's improved
performance is also demonstrated on simulated data.",
annote = "incomplete",
fjournal = "IEEE Transactions on Software Engineering",
journal-URL = "http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?punumber=32",
keywords = "Completion time, development time, early prediction,
Gamma model, manpower, Norden/Rayleigh model",
}
@Manual{StatSci:1997:SGS,
title = "{SPlus-4} Guide to Statistics",
organization = pub-STATSCI,
address = pub-STATSCI:adr,
pages = "xviii + 875",
month = jul,
year = "1997",
bibdate = "Tue Jan 12 11:12:20 1999",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
note = "Order number R620203.",
acknowledgement = ack-nhfb,
}
@Manual{StatSci:1997:SPG,
title = "{SPlus-4} Programmer's Guide",
organization = pub-STATSCI,
address = pub-STATSCI:adr,
pages = "xvi + 17--581",
month = aug,
year = "1997",
bibdate = "Tue Jan 12 11:12:20 1999",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
note = "Order number R620201.",
acknowledgement = ack-nhfb,
}
@Manual{StatSci:1997:SUG,
title = "{SPlus-4} User's Guide",
organization = pub-STATSCI,
address = pub-STATSCI:adr,
pages = "xiv + 15--620",
month = aug,
year = "1997",
bibdate = "Tue Jan 12 11:12:20 1999",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
note = "Order number R620199.",
acknowledgement = ack-nhfb,
}
@Article{Struyf:1997:IRC,
author = "A. Struyf and M. Hubert and P. J. Rousseeuw",
title = "Integrating robust clustering techniques in {S-PLUS}",
journal = j-COMP-STAT-DATA-ANA,
volume = "26",
pages = "17--37",
year = "1997",
CODEN = "CSDADW",
ISSN = "0167-9473 (print), 1872-7352 (electronic)",
bibdate = "Thu Apr 19 05:50:09 2001",
bibsource = "ftp://ftp.math.utah.edu/pub/mirrors/ftp.ira.uka.de/bibliography/Math/UIA.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
keywords = "SFT SRV",
}
@Book{Venables:1997:MAS,
author = "W. N. (William N.) Venables and Brian D. Ripley",
title = "Modern applied statistics with {S-Plus}",
publisher = pub-SV,
address = pub-SV:adr,
edition = "Second",
pages = "xv + 548",
year = "1997",
ISBN = "0-387-98214-0",
ISBN-13 = "978-0-387-98214-4",
LCCN = "QA276.4 .V46 1997",
bibdate = "Tue Sep 22 08:25:09 MDT 1998",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.stats.ox.ac.uk/pub/MASS2/",
acknowledgement = ack-nhfb,
annote = "The book's home page at the URL in this entry also
discusses how to use the book with the R language.",
keywords = "Mathematical statistics -- Data processing.; S-Plus;
Statistics -- Data processing",
}
@Book{Anonymous:1998:S,
author = "Anonymous",
title = "{S-PLUS 4.5}",
publisher = pub-DUXBURY-PRESS,
address = pub-DUXBURY-PRESS:adr,
edition = "Student",
pages = "440",
year = "1998",
ISBN = "0-534-35873-X",
ISBN-13 = "978-0-534-35873-0",
LCCN = "????",
bibdate = "Fri May 21 10:32:51 MDT 1999",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
note = "Includes CD-ROM.",
acknowledgement = ack-nhfb,
annote = "``MathSoft'' System requirements: 486 IBM compatible
PC; 40MB or 108MB (full installation); Windows 95,
Windows NT, or Windows 3.1x; graphics cards.",
keywords = "Mathematical statistics -- Computer programs.",
}
@Book{Chambers:1998:PDG,
author = "John M. Chambers",
title = "Programming with Data: {A} Guide to the {S} Language",
publisher = pub-SV,
address = pub-SV:adr,
pages = "xv + 469",
year = "1998",
ISBN = "0-387-91577-X",
ISBN-13 = "978-0-387-91577-7",
LCCN = "QA76.73.S15C483 1998",
bibdate = "Tue Jan 12 11:17:07 1999",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
}
@Article{Hansen:1998:BRB,
author = "Mark Hansen",
title = "Book Review: {{\booktitle{Applied Wavelet Analysis
with S-PLUS}} by Andrew Bruce; Hong-Ye Gao}",
journal = j-TECHNOMETRICS,
volume = "40",
number = "2",
pages = "159--159",
month = may,
year = "1998",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/1270657",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:20:24 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i254373;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics1990.bib",
URL = "http://www.jstor.org/stable/1270657",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Book{Kaluzny:1998:SUM,
author = "Stephen P. Kaluzny and Silvia C. Vega and Tamre P.
Cardoso and Alice A. Shelly",
title = "{S+SpatialStats}: User's manual for {Windows} and
{UNIX}",
publisher = pub-SV,
address = pub-SV:adr,
pages = "xvi + 327",
year = "1998",
ISBN = "0-387-98226-4",
ISBN-13 = "978-0-387-98226-7",
LCCN = "QA278.2 .S18 1998",
bibdate = "Tue Aug 05 15:35:10 2003",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
}
@Book{Mathsoft:1998:GSS,
author = "{Mathsoft, Inc}",
title = "Getting started with {S-Plus 4.5}",
publisher = "Data Analysis Products Division, MathSoft, Inc.",
address = "Seattle, WA, USA",
pages = "48",
month = apr,
year = "1998",
bibdate = "Fri May 21 10:32:51 MDT 1999",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
alttitle = "S-Plus 4: Discover the power of S.",
keywords = "Mathematical statistics -- Computer programs",
}
@Book{Millard:1998:EPU,
author = "Steven P. Millard",
title = "{EnvironmentalStats} for {S-PLUS}: user's manual for
{Windows} and {UNIX}",
publisher = pub-SV,
address = pub-SV:adr,
pages = "xii + 381",
year = "1998",
ISBN = "0-387-98486-0",
ISBN-13 = "978-0-387-98486-5",
LCCN = "GE45.S73 M55 1998",
bibdate = "Tue Sep 22 08:25:09 MDT 1998",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
keywords = "Environmental sciences -- Statistical methods -- Data
processing; S-Plus",
}
@Book{Selvin:1998:MAB,
author = "Steve Selvin",
title = "Modern applied biostatistical methods using {S-Plus}",
volume = "28",
publisher = pub-OXFORD,
address = pub-OXFORD:adr,
pages = "xiv + 461",
year = "1998",
ISBN = "0-19-512025-6",
ISBN-13 = "978-0-19-512025-7",
LCCN = "QH323.5 .S448 1998",
bibdate = "Tue Sep 22 08:25:09 MDT 1998",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
series = "Monographs in epidemiology and biostatistics",
acknowledgement = ack-nhfb,
keywords = "Biology -- Data processing; Biometry; Biometry --
methods; Programming Languages; S (Computer program
language); S-Plus (Computer file); S-Plus.",
}
@Manual{StatSci:1998:SGS,
title = "{SPlus-5} Guide to Statistics",
organization = pub-STATSCI,
address = pub-STATSCI:adr,
pages = "xxii + 1014",
year = "1998",
bibdate = "Tue Jan 12 11:12:20 1999",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
note = "Order number R620291.",
acknowledgement = ack-nhfb,
}
@Manual{StatSci:1998:SUG,
title = "{SPlus-5} User's Guide",
organization = pub-STATSCI,
address = pub-STATSCI:adr,
pages = "xvi + 336",
year = "1998",
bibdate = "Tue Jan 12 11:12:20 1999",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
note = "Order number R620293.",
acknowledgement = ack-nhfb,
}
@Article{Ziegel:1998:BRBd,
author = "Eric R. Ziegel",
title = "Book Review: {{\booktitle{The Basics of S and S-PLUS}}
by Andreas Krause; Melvin Olson}",
journal = j-TECHNOMETRICS,
volume = "40",
number = "1",
pages = "82--83",
month = feb,
year = "1998",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/1271413",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:20:22 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i254372;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics1990.bib",
URL = "http://www.jstor.org/stable/1271413",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Article{Anonymous:1999:NPE,
author = "Anonymous",
title = "New Products: {ENVI Version 3.1, Research Systems,
Inc.; FTLinuxCourse, Future Technologies; Alexandria
4.50, Spectra Logic Corporation; Applixware for Linux,
Applix, Inc.; c-tree Plus V6.8A, FairCom Corporation;
AFS Server and AS Client, Transarc; Hamilton,
Microstate Corporation; Cat5 Reach, Raritan Computer;
TclPro 1.1, Scriptics Corporation; Wingz Professional
3.0 for Linux, IISC; WordPerfect 8 for Linux, Corel
Computer; NUOPT for S-PLUS, MathSoft}",
journal = j-LINUX-J,
volume = "59",
pages = "??--??",
month = mar,
year = "1999",
CODEN = "LIJOFX",
ISSN = "1075-3583 (print), 1938-3827 (electronic)",
ISSN-L = "1075-3583",
bibdate = "Thu Jun 3 06:33:57 MDT 1999",
bibsource = "http://www.linuxjournal.com/issue59/index.html;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
fjournal = "Linux Journal",
journal-URL = "http://portal.acm.org/citation.cfm?id=J508",
}
@Article{DDJStaff:1999:NVJ,
author = "{The DDJ Staff}",
title = "News and Views: Just Say No to Carpal Tunnel; {ACM}
Award for {S} Creator; Cruising with {Perl}; You Can't
Judge an Open {E}-Book \ldots{}; {H1-B} Visas in Short
Supply; We Interrupt You with this Message\ldots{};
Great Timing; \path=www.waitandsee.org=",
journal = j-DDJ,
volume = "24",
number = "8",
pages = "18--18",
month = aug,
year = "1999",
CODEN = "DDJOEB",
ISSN = "1044-789X",
bibdate = "Fri Jul 16 19:10:34 MDT 1999",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
note = "John Chambers was awarded the ACM Software System
Award for creating the S System for statistical
computing.",
URL = "http://www.ddj.com/",
acknowledgement = ack-nhfb,
fjournal = "Dr. Dobb's Journal of Software Tools",
}
@PhdThesis{Deegan:1999:ISM,
author = "Leo Joseph Deegan",
title = "Improper survival models",
type = "Thesis (Ph.D. in Biostatistics)",
school = "University of California, Berkeley",
address = "Berkeley, CA, USA",
pages = "vii + 114",
year = "1999",
LCCN = "RA3.6 .D28",
bibdate = "Tue Feb 20 11:55:12 MST 2001",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
note = "Includes S-PLUS code: isurvreg, Improper Survival
Regression.",
keywords = "dissertations, academic --- UCB --- public health ---
1991--2000; University of California, Berkeley. Group
in Biostatistics --- dissertations",
}
@Article{Kafadar:1999:BRB,
author = "Karen Kafadar and James R. Koehler",
title = "Book Review: {{\booktitle{Modern Applied Statistics
with S-Plus}}}, 2nd edition",
journal = j-AMER-STAT,
volume = "53",
number = "1",
pages = "86--??",
month = feb,
year = "1999",
CODEN = "ASTAAJ",
ISSN = "0003-1305 (print), 1537-2731 (electronic)",
ISSN-L = "0003-1305",
bibdate = "Mon Jun 07 09:45:40 1999",
bibsource = "http://www.amstat.org/publications/tas/toc_99.html;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
note = "Review of \cite{Venables:1997:MAS}.",
acknowledgement = ack-nhfb,
fjournal = "The American Statistician",
journal-URL = "http://www.tandfonline.com/loi/utas20",
}
@Book{StatSci:1999:MSP,
author = "{StatSci}",
title = "{Math Soft S-PLUS 4.5}",
publisher = pub-STATSCI,
address = pub-STATSCI:adr,
edition = "4.5 (student edition)",
year = "1999",
ISBN = "0-534-35873-X",
ISBN-13 = "978-0-534-35873-0",
bibdate = "Tue Feb 20 12:09:17 2001",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
note = "Includes CD-ROM.",
acknowledgement = ack-nhfb,
}
@Book{Venables:1999:MAS,
author = "W. N. (William N.) Venables and Brian D. Ripley",
title = "Modern applied statistics with {S-PLUS}: Volume 1:
Data Analysis",
publisher = pub-SV,
address = pub-SV:adr,
edition = "Third",
pages = "xi + 501",
year = "1999",
ISBN = "0-387-98825-4 (hardback)",
ISBN-13 = "978-0-387-98825-2 (hardback)",
LCCN = "QA276.4.V46 1999",
bibdate = "Tue Feb 20 11:53:02 2001",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
note = "From the Web site: ``The book is also useful with R, a
freely-available open-source statistical system `not
unlike S'. We have tried where possible to use code
that works in all versions of S-PLUS and in R.''.",
series = "Statistics and computing",
URL = "http://www.stats.ox.ac.uk/pub/MASS3/",
acknowledgement = ack-nhfb,
keywords = "Mathematical statistics --- Data processing; S-Plus;
Statistics --- Data processing",
}
@Article{Wolfe:1999:DMP,
author = "Michael A. Wolfe",
title = "On Discrete Minimax Problems in {R} Using Interval
Arithmetic",
journal = j-RELIABLE-COMPUTING,
volume = "5",
number = "4",
pages = "371--383",
month = nov,
year = "1999",
CODEN = "RCOMF8",
DOI = "http://dx.doi.org/10.1023/A:1009930013647",
ISSN = "1385-3139 (print), 1573-1340 (electronic)",
ISSN-L = "1385-3139",
bibdate = "Sat Jan 5 16:01:06 MST 2013",
bibsource = "http://springerlink.metapress.com/openurl.asp?genre=issue&issn=1385-3139&volume=5&issue=4;
http://www.math.utah.edu/pub/tex/bib/reliablecomputing.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://link.springer.com/article/10.1023/A%3A1009930013647/;
http://www.springerlink.com/openurl.asp?genre=article&issn=1385-3139&volume=5&issue=4&spage=371;
http://www.springerlink.com/openurl.asp?genre=article&issn=1385-3139&volume=5&issue=4&spage=371-383",
acknowledgement = ack-nhfb # "\slash " # ack-rbk # "\slash " # ack-vk,
fjournal = "Reliable Computing = Nadezhnye vychisleniia",
journal-URL = "http://link.springer.com/journal/11155",
}
@Article{Ziegel:1999:BRBr,
author = "Eric R. Ziegel",
title = "Book Review: {{\booktitle{Environmental Stats for
S-Plus}} by Steven P. Millard}",
journal = j-TECHNOMETRICS,
volume = "41",
number = "2",
pages = "179--179",
month = may,
year = "1999",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/1270752",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:20:30 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i254377;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics1990.bib",
URL = "http://www.jstor.org/stable/1270752",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Article{Bureau:2000:PIH,
author = "Alexandre Bureau and James P. Hughes and Stephen C.
Shiboski",
title = "An {S-Plus} Implementation of Hidden {Markov} Models
in Continuous Time",
journal = j-J-COMPUT-GRAPH-STAT,
volume = "9",
number = "4",
pages = "621--??",
month = dec,
year = "2000",
CODEN = "",
ISSN = "1061-8600 (print), 1537-2715 (electronic)",
ISSN-L = "1061-8600",
bibdate = "Wed Apr 18 10:23:03 MDT 2001",
bibsource = "http://www.amstat.org/publications/jcgs/;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.amstat.org/publications/jcgs/abstracts00/Bureau.htm",
acknowledgement = ack-nhfb,
fjournal = "Journal of Computational and Graphical Statistics",
journal-URL = "http://www.tandfonline.com/loi/ucgs20",
}
@Article{Kautz:2000:LLI,
author = "Frederick Kautz and Dimitrios Souflis and Robert
Carbonari and DDJ and Al Gettier and Tina Femia and
Andrew D. Todd and Anonymous and Alan Horn and
Anonymous and Brad Clawsie and Samuel Pearlman",
title = "Letters: The {S} Language; {IP} Security; {Pnuts}
Pointer; Flyby; Worker Shortage?; Design by Interface",
journal = j-DDJ,
volume = "25",
number = "4",
pages = "10, 12",
month = apr,
year = "2000",
CODEN = "DDJOEB",
ISSN = "1044-789X",
bibdate = "Thu Nov 9 08:25:14 MST 2000",
bibsource = "http://www.ddj.com/;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
note = "See \cite{Stevens:2000:CPP}.",
acknowledgement = ack-nhfb,
fjournal = "Dr. Dobb's Journal of Software Tools",
}
@Book{Krause:2000:BP,
author = "Andreas Krause and Melvin Olson",
title = "The basics of {S} and {S-Plus}",
publisher = pub-SV,
address = pub-SV:adr,
edition = "Second",
pages = "xxii + 382",
year = "2000",
ISBN = "0-387-98961-7",
ISBN-13 = "978-0-387-98961-7",
LCCN = "QA276.4 .K73 2000",
bibdate = "Tue Feb 20 11:55:12 MST 2001",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
series = "Statistics and computing",
acknowledgement = ack-nhfb,
keywords = "mathematical statistics --- data processing; S-PLUS",
}
@Book{Millard:2000:EPU,
author = "Steven P. Millard",
title = "{EnvironmentalStats} for {S-Plus}: User's Manual for
{Windows} and {UNIX}, Versions 1.0 \& 1.1",
publisher = "Probability, Statistics \& Information",
address = "Seattle, WA, USA",
pages = "x + 381",
month = mar,
year = "2000",
LCCN = "????",
bibdate = "Fri Sep 13 13:00:34 2002",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
xxISBN = "none",
}
@Book{Pinheiro:2000:MEM,
author = "Jose C. Pinheiro and Douglas M. Bates",
title = "Mixed-effects models in {S} and {S-PLUS}",
publisher = pub-SV,
address = pub-SV:adr,
pages = "xvi + 528",
year = "2000",
ISBN = "0-387-98957-9",
ISBN-13 = "978-0-387-98957-0",
LCCN = "QA76.73.S15 P56 2000",
bibdate = "Thu Apr 12 10:53:17 2001",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
price = "US\$69.95",
series = "Statistics and computing",
acknowledgement = ack-nhfb,
}
@MastersThesis{Rohrl:2000:PPS,
author = "Armin R{\"o}hrl",
title = "Parallel processing in statistical computation: {BSP},
{FPGas} and {MPI} for the {S}-language",
type = "Th{\`e}se sciences",
school = "EPF Lausanne",
address = "Lausanne, Switzerland",
pages = "137",
year = "2000",
bibdate = "Wed Aug 27 07:24:45 2003",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
}
@Article{Stevens:2000:CPP,
author = "Al Stevens",
title = "{C} Programming: The {S} Programming Language",
journal = j-DDJ,
volume = "25",
number = "2",
pages = "110--113",
month = feb,
year = "2000",
CODEN = "DDJOEB",
ISSN = "1044-789X",
bibdate = "Thu Nov 9 08:25:13 MST 2000",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
note = "See comment on another {S} language
\cite{Kautz:2000:LLI}.",
URL = "http://www.ddj.com/ftp/2000/2000_02/cprog220.txt",
abstract = "Al resurrects S, a homebrew C variant he implemented a
decade ago -- back before the days of JavaScript and
VB. His updated version is written in C++, and includes
a shell program that tests the interpreter by loading
and executing text source-code files written in the S
language. Additional resources include cprog220.txt
(listings).",
acknowledgement = ack-nhfb,
fjournal = "Dr. Dobb's Journal of Software Tools",
xxnote = "This is NOT the statistics programming language that
predated S-Plus; I wrote to the author and pointed out
the name conflict.",
}
@Book{Venables:2000:MAS,
author = "W. N. (William N.) Venables and Brian D. Ripley",
title = "Modern applied statistics with {S-PLUS}: Volume 2: {S}
Programming",
publisher = pub-SV,
address = pub-SV:adr,
pages = "x + 264",
year = "2000",
ISBN = "0-387-98966-8",
ISBN-13 = "978-0-387-98966-2",
LCCN = "QA76.73.S15 V46 2000",
bibdate = "Thu Apr 19 06:26:28 2001",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
series = "Statistics and computing",
URL = "http://www.stats.ox.ac.uk/pub/MASS3/",
acknowledgement = ack-nhfb,
annote = "This is the first entry in the TUG bibliography
archive for the year 2000.",
keywords = "Mathematical statistics --- Data processing; S-Plus;
Statistics --- Data processing",
}
@Article{Ziegel:2000:BRBi,
author = "Eric R. Ziegel",
title = "Book Review: {{\booktitle{Modern Applied
Biostatistical Methods Using S-Plus}} by Steve
Selvin}",
journal = j-TECHNOMETRICS,
volume = "42",
number = "2",
pages = "221--221",
month = may,
year = "2000",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/1271484",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:20:35 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i254381;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics2000.bib",
URL = "http://www.jstor.org/stable/1271484",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Book{Everitt:2001:AMD,
author = "Brian Everitt and Sophia Rabe-Hesketh",
title = "Analyzing medical data using {S-PLUS}",
publisher = pub-SV,
address = pub-SV:adr,
pages = "????",
year = "2001",
ISBN = "0-387-98862-9",
ISBN-13 = "978-0-387-98862-7",
LCCN = "RA409.5 E94 2001",
bibdate = "Tue Feb 20 12:12:53 2001",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
series = "Statistics for biology and health",
acknowledgement = ack-nhfb,
}
@Book{Harrell:2001:RMS,
author = "Frank E. {Harrell, Jr.}",
title = "Regression Modeling Strategies: With Applications to
Linear Models, Logistic Regression, and Survival
Analysis",
volume = "??",
publisher = pub-SV,
address = pub-SV:adr,
pages = "xxiii + 571",
year = "2001",
CODEN = "????",
DOI = "http://dx.doi.org/10.1007/978-1-4757-3462-1",
ISBN = "1-4419-2918-5, 1-4757-3462-X (e-book)",
ISBN-13 = "978-1-4419-2918-1, 978-1-4757-3462-1 (e-book)",
ISSN = "0172-7397",
ISSN-L = "0172-7397",
LCCN = "QA276-280",
bibdate = "Thu Jun 19 06:41:19 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/probstat2000.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
series = "Springer Series in Statistics",
URL = "http://link.springer.com/book/10.1007/978-1-4757-3462-1",
abstract = "Many texts are excellent sources of knowledge about
individual statistical tools, but the art of data
analysis is about choosing and using multiple tools.
Instead of presenting isolated techniques, this text
emphasizes problem solving strategies that address the
many issues arising when developing multivariable
models using real data and not standard textbook
examples. It includes imputation methods for dealing
with missing data effectively, methods for dealing with
nonlinear relationships and for making the estimation
of transformations a formal part of the modeling
process, methods for dealing with ``too many variables
to analyze and not enough observations,'' and powerful
model validation techniques based on the bootstrap.
This text realistically deals with model uncertainty
and its effects on inference to achieve ``safe data
mining.''.",
acknowledgement = ack-nhfb,
remark = "Most volumes in this series are unnumbered.",
series-URL = "http://link.springer.com/bookseries/692",
subject = "Statistics; Mathematical statistics",
tableofcontents = "General Aspects of Fitting Regression Models \\
Missing Data \\
Multivariable Modeling Strategies \\
Resampling, Validating, Describing, and Simplifying the
Model \\
S-PLUS Software \\
Case Study in Least Squares Fitting and Interpretation
of a Linear Model \\
Case Study in Imputation and Data Reduction \\
Overview of Maximum Likelihood Estimation \\
Binary Logistic Regression \\
Logistic Model Case Study 1: Predicting Cause of Death
\\
Logistic Model Case Study 2: Survival of Titanic
Passengers \\
Ordinal Logistic Regression \\
Case Study in Ordinal Regression, Data Reduction, and
Penalization \\
Models Using Nonparametic Transformations of X and Y
\\
Introduction to Survival Analysis \\
Parametric Survival Models \\
Case Study in Parametric Survival Modeling and Model
Approximation \\
Cox Proportional Hazards Regression Model \\
Case Study in Cox Regression",
}
@Book{Krause:2001:ASP,
editor = "Andreas Krause and Steven P. Millard",
title = "Applied statistics in the pharmaceutical industry:
with case studies using {S-Plus}",
publisher = pub-SV,
address = pub-SV:adr,
pages = "xviii + 513",
year = "2001",
ISBN = "0-387-98814-9",
ISBN-13 = "978-0-387-98814-6",
LCCN = "S122 .A665 2001",
bibdate = "Thu Apr 19 06:08:25 2001",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
keywords = "Drugs --- Research --- Statistical methods",
}
@Article{Lumley:2001:BRB,
author = "Thomas Lumley",
title = "Book Review: {{\booktitle{Environmental Statistics
with S-PLUS}} by Steven P. Millard; Nagaraj K.
Neerchal}",
journal = j-TECHNOMETRICS,
volume = "43",
number = "4",
pages = "495--495",
month = nov,
year = "2001",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/1270836",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:20:44 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i254387;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics2000.bib",
URL = "http://www.jstor.org/stable/1270836",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Book{Millard:2001:ESP,
author = "Steven P. Millard and Nagaraj K. Neerchal",
title = "Environmental statistics with {S-Plus}",
publisher = pub-CRC,
address = pub-CRC:adr,
pages = "830",
year = "2001",
ISBN = "0-8493-7168-6",
ISBN-13 = "978-0-8493-7168-4",
LCCN = "GE45.S73 M55 2001",
bibdate = "Tue Feb 20 11:55:12 MST 2001",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
series = "Applied environmental statistics",
acknowledgement = ack-nhfb,
keywords = "environmental sciences -- statistical methods -- data
processing; S-PLUS",
}
@Book{Schumacker:2001:USC,
author = "Randall E. Schumacker and Allen Akers",
title = "Understanding statistical concepts using {S-plus}",
publisher = "Lawrence Erlbaum Associates",
address = "Mahwah, NJ, USA",
pages = "xiii + 357",
year = "2001",
ISBN = "0-8058-3623-3",
ISBN-13 = "978-0-8058-3623-3",
LCCN = "QA276.4 .S366 2001",
bibdate = "Fri Sep 13 15:26:38 2002",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
keywords = "Mathematical statistics --- Data processing; S-Plus",
}
@Article{Ziegel:2001:BRBac,
author = "Eric R. Ziegel",
title = "Book Review: {{\booktitle{The Basics of S and S-PLUS}}
by Andreas Krause; Melvin Olson}",
journal = j-TECHNOMETRICS,
volume = "43",
number = "2",
pages = "249--249",
month = may,
year = "2001",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/1271073",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:20:41 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i254385;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics2000.bib",
URL = "http://www.jstor.org/stable/1271073",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Article{Ziegel:2001:BRBad,
author = "Eric R. Ziegel",
title = "Book Review: {{\booktitle{Modern Applied Statistics
with S-PLUS}} by W. N. Venables; B. D. Ripley}",
journal = j-TECHNOMETRICS,
volume = "43",
number = "2",
pages = "249--249",
month = may,
year = "2001",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/1271074",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:20:41 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i254385;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics2000.bib",
URL = "http://www.jstor.org/stable/1271074",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Article{Ziegel:2001:BRBe,
author = "Eric R. Ziegel",
title = "Book Review: {{\booktitle{Mixed-Effects Models in S
and S-PLUS}} by Jos{\'e} C. Pinheiro; Douglas M.
Bates}",
journal = j-TECHNOMETRICS,
volume = "43",
number = "1",
pages = "113--113",
month = feb,
year = "2001",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/1270889",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:20:40 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i254384;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics2000.bib",
URL = "http://www.jstor.org/stable/1270889",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Book{Crawley:2002:SCI,
author = "Michael J. Crawley",
title = "Statistical computing: an introduction to data
analysis using {S-Plus}",
publisher = pub-WILEY,
address = pub-WILEY:adr,
pages = "ix + 761",
year = "2002",
ISBN = "0-471-56040-5",
ISBN-13 = "978-0-471-56040-1",
LCCN = "QA276.4 .C73 2002",
bibdate = "Fri Sep 13 13:03:56 MDT 2002",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
keywords = "statistics -- data processing",
}
@Book{Dalgaard:2002:ISR,
author = "Peter Dalgaard",
title = "Introductory Statistics with {R}",
publisher = pub-SV,
address = pub-SV:adr,
pages = "xv + 267",
year = "2002",
ISBN = "0-387-95475-9",
ISBN-13 = "978-0-387-95475-2",
LCCN = "QA276.4 .D33 2002",
bibdate = "Mon Dec 08 11:29:26 2003",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
remark = "Second edition \cite{Dalgaard:2008:ISR}.",
}
@Book{Everitt:2002:HSA,
author = "Brian S. Everitt",
title = "A Handbook of Statistical Analyses using {S-PLUS}",
publisher = pub-CHAPMAN-HALL-CRC,
address = pub-CHAPMAN-HALL-CRC:adr,
edition = "Second",
pages = "xiii + 240",
year = "2002",
ISBN = "1-58488-280-8",
ISBN-13 = "978-1-58488-280-0",
LCCN = "QA276.4.E93 1994",
bibdate = "Thu Jan 08 08:13:27 2004",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
}
@Book{Fox:2002:RPC,
author = "John Fox",
title = "An {R} and {S-Plus} companion to applied regression",
publisher = "Sage Publications",
address = "Thousand Oaks, CA, USA",
pages = "xvi + 312",
year = "2002",
ISBN = "0-7619-2279-2, 0-7619-2280-6 (paperback)",
ISBN-13 = "978-0-7619-2279-7, 978-0-7619-2280-3 (paperback)",
LCCN = "QA278.2 .F628 2002",
bibdate = "Fri Sep 13 13:03:56 MDT 2002",
bibsource = "http://www.math.utah.edu/pub/tex/bib/amstat2000.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
keywords = "R (computer programming language); regression analysis
-- data processing; S-Plus",
}
@Article{Leisch:2002:SPM,
author = "Friedrich Leisch",
title = "{Sweave}, {Part I}: Mixing {R} and {\LaTeX}",
journal = "R News",
volume = "2",
number = "3",
pages = "28--31",
month = dec,
year = "2002",
bibdate = "Sat Jul 05 19:24:59 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/litprog.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.statistik.lmu.de/~leisch/Sweave/Sweave-Rnews-2002-3.pdf",
acknowledgement = ack-nhfb,
}
@Article{Lund:2002:BRB,
author = "Ulric J. Lund",
title = "Book Review: {{\booktitle{Understanding Statistical
Concepts Using S-Plus}}}",
journal = j-AMER-STAT,
volume = "56",
number = "3",
pages = "249--??",
month = aug,
year = "2002",
CODEN = "ASTAAJ",
ISSN = "0003-1305 (print), 1537-2731 (electronic)",
ISSN-L = "0003-1305",
bibdate = "Thu Jan 8 07:06:51 MST 2004",
bibsource = "http://www.amstat.org/publications/tas/;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
note = "Review of \cite{Schumacker:2001:USC}.",
URL = "http://oberon.ingentaselect.com/cgi-bin/linker?ini=asa&reqidx=/cw/asa/00031305/v56n3/s18/p249",
acknowledgement = ack-nhfb,
fjournal = "The American Statistician",
journal-URL = "http://www.tandfonline.com/loi/utas20",
}
@Article{Lund:2002:BRBa,
author = "Ulric J. Lund",
title = "Book Review: {{\booktitle{Understanding Statistical
Concepts Using S-Plus}}}",
journal = j-AMER-STAT,
volume = "56",
number = "3",
pages = "249--??",
month = aug,
year = "2002",
CODEN = "ASTAAJ",
ISSN = "0003-1305 (print), 1537-2731 (electronic)",
ISSN-L = "0003-1305",
bibdate = "Thu Jan 8 07:06:51 MST 2004",
bibsource = "http://www.amstat.org/publications/tas/;
http://www.math.utah.edu/pub/tex/bib/amstat2000.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://oberon.ingentaselect.com/cgi-bin/linker?ini=asa&reqidx=/cw/asa/00031305/v56n3/s18/p249",
acknowledgement = ack-nhfb,
fjournal = "The American Statistician",
journal-URL = "http://www.tandfonline.com/loi/utas20",
}
@Book{Millard:2002:EPU,
author = "Steven P. Millard",
title = "{EnvironmentalStats} for {S-PLUS}: user's manual for
version 2.0",
publisher = pub-SV,
address = pub-SV:adr,
edition = "Second",
pages = "xiii + 264",
year = "2002",
ISBN = "0-387-95398-1",
ISBN-13 = "978-0-387-95398-4",
LCCN = "GE45.S73 M52 2002",
bibdate = "Fri Sep 13 13:03:56 MDT 2002",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
keywords = "environmental sciences -- statistical methods -- data
processing; S-Plus",
}
@Book{Venables:2002:IRN,
author = "W. N. (William N.) Venables and D. M. (David M.)
Smith",
title = "An introduction to {R}: notes on {R}: a programming
environment for data analysis and graphics, version
1.4.1",
publisher = pub-NETWORK-THEORY,
address = pub-NETWORK-THEORY:adr,
pages = "vi + 139",
year = "2002",
ISBN = "0-9541617-4-2",
ISBN-13 = "978-0-9541617-4-3",
LCCN = "QA276.4 .V45 2001",
bibdate = "Mon Jul 4 15:50:14 MDT 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
acknowledgement = ack-nhfb,
subject = "Statistics; Data processing; R (Computer program
language)",
}
@Book{Venables:2002:MAS,
author = "W. N. (William N.) Venables and Brian D. Ripley",
title = "Modern Applied Statistics with {S}",
publisher = pub-SV,
address = pub-SV:adr,
edition = "Fourth",
pages = "xi + 495",
year = "2002",
ISBN = "0-387-95457-0",
ISBN-13 = "978-0-387-95457-8",
LCCN = "QA276.4 .V46 2002",
bibdate = "Mon Jul 04 16:15:09 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
remark = "Previously published as \cite{Venables:1999:MAS}.",
}
@Article{Weisberg:2002:DRR,
author = "Sanford Weisberg",
title = "Dimension Reduction Regression in {R}",
journal = j-J-STAT-SOFT,
volume = "7",
number = "1",
pages = "1--22",
year = "2002",
CODEN = "JSSOBK",
ISSN = "????",
bibdate = "Sun Nov 17 22:35:43 2002",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v07/i01;
http://www.jstatsoft.org/v07/i01/dr_1.0.tar.gz;
http://www.jstatsoft.org/v07/i01/drdoc.pdf;
http://www.jstatsoft.org/v07/i01/updates",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
keywords = "R; S-Plus",
}
@Article{Zeileis:2002:SRP,
author = "Achim Zeileis and Friedrich Leisch and Kurt Hornik and
Christian Kleiber",
title = "{strucchange}: an {R} package for Testing for
Structural Change in Linear Regression Models",
journal = j-J-STAT-SOFT,
volume = "7",
number = "2",
pages = "1--38",
year = "2002",
CODEN = "JSSOBK",
ISSN = "????",
bibdate = "Sun Nov 17 22:35:43 2002",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v07/i02;
http://www.jstatsoft.org/v07/i02/strucchange.pdf;
http://www.jstatsoft.org/v07/i02/strucchange_0.9-5.tar.gz;
http://www.jstatsoft.org/v07/i02/updates",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
keywords = "R; S-Plus",
}
@Article{Ziegel:2002:BRBag,
author = "Eric R. Ziegel",
title = "Book Review: {{\booktitle{A Handbook of Statistical
Analyses Using S-PLUS}} by Brian S. Everitt}",
journal = j-TECHNOMETRICS,
volume = "44",
number = "3",
pages = "300--300",
month = aug,
year = "2002",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/1270517",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:20:50 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i254390;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics2000.bib",
URL = "http://www.jstor.org/stable/1270517",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Article{Ziegel:2002:BRBx,
author = "Eric R. Ziegel",
title = "Book Review: {{\booktitle{Analyzing Medical Data Using
S-PLUS}} by B. S. Everitt; Sophia Rabe-Hesketh}",
journal = j-TECHNOMETRICS,
volume = "44",
number = "2",
pages = "201--202",
month = may,
year = "2002",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/1271291",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:20:48 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i254389;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics2000.bib",
URL = "http://www.jstor.org/stable/1271291",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Article{Anonymous:2003:BRBam,
author = "Anonymous",
title = "Book Review: {{\booktitle{Modeling Financial Time
Series with S-PLUS{\reg}}} by Eric Zivot; Jiahui
Wang}",
journal = j-TECHNOMETRICS,
volume = "45",
number = "4",
pages = "373--374",
month = nov,
year = "2003",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/25047114",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:20:57 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i25047080;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics2000.bib",
URL = "http://www.jstor.org/stable/25047114",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Article{Anonymous:2003:BRBu,
author = "Anonymous",
title = "Book Review: {{\booktitle{The Basics of S-PLUS}} by
Andreas Krause; Melvin Olson}",
journal = j-TECHNOMETRICS,
volume = "45",
number = "2",
pages = "183--183",
month = may,
year = "2003",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/25047039",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:20:54 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i25047007;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics2000.bib",
URL = "http://www.jstor.org/stable/25047039",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Article{Contoni:2003:RNS,
author = "Eva Contoni",
title = "Resistant Nonparametric Smoothing with {S-PLUS}",
journal = j-J-STAT-SOFT,
volume = "8",
number = "3",
pages = "??--??",
month = "????",
year = "2003",
CODEN = "JSSOBK",
ISSN = "????",
bibdate = "Tue Dec 16 17:06:19 2003",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v08/i03;
http://www.jstatsoft.org/v08/i03/;
http://www.jstatsoft.org/v08/i03/updates;
http://www.jstatsoft.org/v08/i03/v8.txt",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
xxnote = "Check publication data: no longer at journal Web
site??",
}
@Article{Cowles:2003:BRB,
author = "Mary Kathryn Cowles",
title = "Book Review: {{\booktitle{An R and S-PLUS Companion to
Applied Regression}}}",
journal = j-AMER-STAT,
volume = "57",
number = "4",
pages = "316--??",
month = nov,
year = "2003",
CODEN = "ASTAAJ",
ISSN = "0003-1305 (print), 1537-2731 (electronic)",
ISSN-L = "0003-1305",
bibdate = "Thu Jan 8 07:07:00 MST 2004",
bibsource = "http://www.amstat.org/publications/tas/;
http://www.math.utah.edu/pub/tex/bib/amstat2000.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
note = "Review of \cite{Fox:2002:RPC}.",
URL = "http://oberon.ingentaselect.com/cgi-bin/linker?ini=asa&reqidx=/cw/asa/00031305/v57n4/s16/p316",
acknowledgement = ack-nhfb,
fjournal = "The American Statistician",
journal-URL = "http://www.tandfonline.com/loi/utas20",
}
@Article{Dawson:2003:BRB,
author = "Jeffrey D. Dawson",
title = "Book Review: {{\booktitle{Analyzing Medical Data Using
S-PLUS}}, by Brian Everitt; Sophia Rabe-Hesketh}",
journal = j-J-AM-STAT-ASSOC,
volume = "98",
number = "463",
pages = "773--774",
month = sep,
year = "2003",
CODEN = "JSTNAL",
ISSN = "0162-1459 (print), 1537-274X (electronic)",
ISSN-L = "0162-1459",
bibdate = "Wed Jan 25 08:06:27 MST 2012",
bibsource = "http://www.jstor.org/journals/01621459.html;
http://www.jstor.org/stable/i30045274;
http://www.math.utah.edu/pub/tex/bib/jamstatassoc2000.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstor.org/stable/30045317",
acknowledgement = ack-nhfb,
fjournal = "Journal of the American Statistical Association",
journal-URL = "http://www.tandfonline.com/loi/uasa20",
}
@Article{Eastwood:2003:BRB,
author = "Brian J. Eastwood",
title = "Book Review: {{\booktitle{Applied Statistics in the
Pharmaceutical Industry with Case Studies Using
S-PLUS}}, by Steven P. Millard; Andreas Krause}",
journal = j-J-AM-STAT-ASSOC,
volume = "98",
number = "461",
pages = "250--250",
month = mar,
year = "2003",
CODEN = "JSTNAL",
ISSN = "0162-1459 (print), 1537-274X (electronic)",
ISSN-L = "0162-1459",
bibdate = "Tue Dec 16 18:18:46 MST 2003",
bibsource = "http://www.amstat.org/publications/jasa/;
http://www.jstor.org/journals/01621459.html;
http://www.jstor.org/stable/i30045186;
http://www.math.utah.edu/pub/tex/bib/jamstatassoc2000.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstor.org/stable/30045215",
acknowledgement = ack-nhfb,
fjournal = "Journal of the American Statistical Association",
journal-URL = "http://www.tandfonline.com/loi/uasa20",
}
@Article{Firth:2003:CFP,
author = "David Firth",
title = "{CGIwithR}: Facilities for processing {Web} forms
using {R}",
journal = j-J-STAT-SOFT,
volume = "8",
number = "10",
pages = "1--8",
month = "????",
year = "2003",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Tue Dec 16 17:06:19 2003",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v08/i10;
http://www.jstatsoft.org/v08/i10/CGIwithR-overview.pdf",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{Fox:2003:EDR,
author = "John Fox",
title = "Effect Displays in {R} for Generalised Linear Models",
journal = j-J-STAT-SOFT,
volume = "8",
number = "15",
pages = "1--27",
month = "????",
year = "2003",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Tue Dec 16 17:06:19 2003",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v08/i15;
http://www.jstatsoft.org/v08/i15/effect-displays-revised.pdf",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{Koenker:2003:SSM,
author = "Roger Koenker and Pin Ng",
title = "{{\tt SparseM}}: {A} Sparse Matrix Package for {R}",
journal = j-J-STAT-SOFT,
volume = "8",
number = "6",
pages = "1--9",
month = "????",
year = "2003",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Tue Dec 16 17:06:19 2003",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v08/i06/SparseM.pdf;
http://www.jstatsoft.org/v08/i6",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{Kuonen:2003:NIP,
author = "Diego Kuonen",
title = "Numerical Integration in {S-PLUS} or {R}: {A} Survey",
journal = j-J-STAT-SOFT,
volume = "8",
number = "13",
pages = "1--14",
year = "2003",
CODEN = "JSSOBK",
ISSN = "????",
bibdate = "Tue Dec 16 17:06:19 2003",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v08/i13;
http://www.jstatsoft.org/v08/i13/article.pdf",
abstract = "This paper reviews current quadrature methods for
approximate calculation of integrals within S-Plus or
R. Starting with the general framework, Gaussian
quadrature will be discussed first, followed by
adaptive rules and Monte Carlo methods. Finally, a
comparison of the methods presented is given. The aim
of this survey paper is to help readers, not expert in
computing, to apply numerical integration methods and
to realize that numerical analysis is an art, not a
science.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
keywords = "Adaptive method; Comparison; Gaussian quadrature;
Monte Carlo method; Quadrature",
}
@Article{Kushler:2003:BRB,
author = "Robert Kushler",
title = "Book Review: {{\booktitle{Statistical Computing: An
Introduction to Data Analysis Using S-PLUS}} by Michael
J. Crawley}",
journal = j-TECHNOMETRICS,
volume = "45",
number = "4",
pages = "369--369",
month = nov,
year = "2003",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/25047104",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:20:57 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i25047080;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics2000.bib",
URL = "http://www.jstor.org/stable/25047104",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Article{Leisch:2003:SPI,
author = "Friedrich Leisch",
title = "{Sweave}, {Part II}: Package Vignettes",
journal = "R News",
volume = "3",
number = "2",
pages = "21--24",
month = oct,
year = "2003",
bibdate = "Sat Jul 05 19:24:59 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/litprog.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.statistik.lmu.de/~leisch/Sweave/Sweave-Rnews-2003-2.pdf",
acknowledgement = ack-nhfb,
}
@Article{Ligges:2003:SRP,
author = "Uwe Ligges and Martin M{\"a}chler",
title = "{{\tt Scatterplot3d}} --- an {R} package for
Visualizing Multivariate Data",
journal = j-J-STAT-SOFT,
volume = "8",
number = "11",
pages = "1--20",
month = "????",
year = "2003",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Tue Dec 16 17:06:19 2003",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v08/i11;
http://www.jstatsoft.org/v08/i11/JSSs3d.pdf",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Book{Maindonald:2003:DAG,
author = "J. H. (John Hilary) Maindonald and John Braun",
title = "Data analysis and graphics using {R}: an example-based
approach",
publisher = pub-CAMBRIDGE,
address = pub-CAMBRIDGE:adr,
pages = "xxiii + 362",
year = "2003",
ISBN = "0-521-81336-0",
ISBN-13 = "978-0-521-81336-5",
LCCN = "QA276.4 .M245 2003",
bibdate = "Mon Jul 4 16:19:30 MDT 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Cambridge series in statistical and probabilistic
mathematics",
URL = "ftp://uiarchive.cso.uiuc.edu/pub/etext/gutenberg/;
http://www.loc.gov/catdir/description/cam031/2002031560.html;
http://www.loc.gov/catdir/toc/cam031/2002031560.html",
acknowledgement = ack-nhfb,
subject = "Statistics; Data processing; Statistics; Graphic
methods; Data processing; R (Computer program
language)",
}
@Article{Manola:2003:BRB,
author = "Judith Manola",
title = "Book Review: {{\booktitle{A Handbook of Statistical
Analyses using S-Plus} (2nd ed.)}}",
journal = j-AMER-STAT,
volume = "57",
number = "2",
pages = "146--??",
month = may,
year = "2003",
CODEN = "ASTAAJ",
ISSN = "0003-1305 (print), 1537-2731 (electronic)",
ISSN-L = "0003-1305",
bibdate = "Thu Jan 8 07:06:56 MST 2004",
bibsource = "http://www.amstat.org/publications/tas/;
http://www.math.utah.edu/pub/tex/bib/amstat2000.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
note = "Review of \cite{Everitt:2002:HSA}.",
URL = "http://oberon.ingentaselect.com/cgi-bin/linker?ini=asa&reqidx=/cw/asa/00031305/v57n2/s19/p146",
acknowledgement = ack-nhfb,
fjournal = "The American Statistician",
journal-URL = "http://www.tandfonline.com/loi/utas20",
}
@Article{Murdoch:2003:ORP,
author = "Duncan Murdoch",
title = "{{\tt Orientlib}}: An {R} Package for Orientation
Data",
journal = j-J-STAT-SOFT,
volume = "8",
number = "19",
pages = "1--11",
month = "????",
year = "2003",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Tue Dec 16 17:06:19 2003",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v08/i19;
http://www.jstatsoft.org/v08/i19/orientlib_paper.pdf",
abstract = "{\tt Orientlib} is an R package to facilitate working
with orientation data, i.e. elements of SO(3). It
provides automatic translation between different
representations of orientations, including rotation
matrices, quaternions, Euler angles and skew-symmetric
matrices; it also has functions for fitting regression
models and displaying orientations. This paper reviews
simple properties of orientation data and describes
{\tt Orientlib}.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
keywords = "Euler angles; orientation data; quaternions; rotation
matrices; SO(3)",
}
@Article{Peng:2003:MDP,
author = "Roger D. Peng",
title = "Multi-dimensional Point Process Models in {R}",
journal = j-J-STAT-SOFT,
volume = "8",
number = "16",
pages = "1--27",
month = "????",
year = "2003",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Tue Dec 16 17:06:19 2003",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v08/i16;
http://www.jstatsoft.org/v08/i16/ptprocR102.pdf",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
}
@Article{Sandry:2003:BRBb,
author = "Thomas D. Sandry",
title = "Book Review: {{\booktitle{Introductory Statistics with
R}} by Peter Dalgaard}",
journal = j-TECHNOMETRICS,
volume = "45",
number = "3",
pages = "274--275",
month = aug,
year = "2003",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/25047066",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:20:56 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i25047044;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics2000.bib",
URL = "http://www.jstor.org/stable/25047066",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Book{Zivot:2003:MFT,
author = "Eric Zivot and Jiahui Wang",
title = "Modeling financial time series with {S-Plus}",
publisher = pub-SV,
address = pub-SV:adr,
pages = "xix + 632",
year = "2003",
ISBN = "0-387-95549-6 (paperback), 0-387-91624-5 (paperback)",
ISBN-13 = "978-0-387-95549-0 (paperback), 978-0-387-91624-8
(paperback)",
LCCN = "HG106 .Z584 2003",
bibdate = "Thu Oct 20 05:53:01 MDT 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
melvyl.cdlib.org:210/CDL90",
acknowledgement = ack-nhfb,
subject = "S-Plus; Finance; Mathematical models; Time-series
analysis; Finance; Econometric models",
}
@Article{Anderson-Cook:2004:BRBc,
author = "Christine M. Anderson-Cook",
title = "Book Review: {{\booktitle{Statistical Tools for
Nonlinear Regression: A Practical Guide with S-PLUS and
R Examples}, second edition}, by S. Huet; A. Bouvier;
M.-A. Poursat; E. Jolivet}",
journal = j-J-AM-STAT-ASSOC,
volume = "99",
number = "467",
pages = "902--903",
month = sep,
year = "2004",
CODEN = "JSTNAL",
ISSN = "0162-1459 (print), 1537-274X (electronic)",
ISSN-L = "0162-1459",
bibdate = "Wed Jan 25 08:06:28 MST 2012",
bibsource = "http://www.amstat.org/publications/jasa/;
http://www.jstor.org/journals/01621459.html;
http://www.jstor.org/stable/i27590430;
http://www.math.utah.edu/pub/tex/bib/jamstatassoc2000.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://miranda.asa.catchword.org/vl=1515603/cl=66/nw=1/rpsv/cw/asa/01621459/v99n467/s52/p904;
http://www.jstor.org/stable/27590464",
acknowledgement = ack-nhfb,
fjournal = "Journal of the American Statistical Association",
journal-URL = "http://www.tandfonline.com/loi/uasa20",
}
@Book{Atkinson:2004:EMD,
author = "Anthony C. Atkinson and Marco Riani and Andrea
Cerioli",
title = "Exploring Multivariate Data with the Forward Search",
volume = "??",
publisher = pub-SV,
address = pub-SV:adr,
pages = "xxi + 621",
year = "2004",
CODEN = "????",
DOI = "http://dx.doi.org/10.1007/978-0-387-21840-3",
ISBN = "0-387-21840-8",
ISBN-13 = "978-0-387-21840-3",
ISSN = "0172-7397",
ISSN-L = "0172-7397",
LCCN = "QA278 .A85 2004",
bibdate = "Thu Jun 19 06:41:19 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/probstat2000.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
series = "Springer Series in Statistics",
URL = "http://link.springer.com/book/10.1007/978-0-387-21840-3",
abstract = "The forward search provides a method of revealing the
structure of data through a mixture of model fitting
and informative plots. The continuous multivariate data
that are the subject of this book are often analyzed as
if they come from one or more normal distributions.
Such analyses, including the need for transformation,
may be distorted by the presence of unidentified
subsets and outliers, both individual and clustered.
These important features are disguised by the standard
procedures of multivariate analysis. The book
introduces methods that reveal the effect of each
observation on fitted models and inferences. The
powerful methods of data analysis will be of importance
to scientists and statisticians. Although the emphasis
is on the analysis of data, theoretical developments
make the book suitable for a graduate statistical
course on multivariate analysis. Topics covered include
principal components analysis, discriminant analysis,
cluster analysis and the analysis of spatial data.
S-Plus programs for the forward search are available on
a web site. This book is a companion to Atkinson and
Riani's Robust Diagnostic Regression Analysis of which
the reviewer for The Journal of the Royal Statistical
Society wrote ``I read this book, compulsive reading
such as it was, in three sittings.'' Anthony Atkinson
is Emeritus Professor of Statistics at the London
School of Economics. He is also the author of Plots,
Transformations, and Regression and coauthor of Optimum
Experimental Designs. Professor Atkinson has served as
Editor of The Journal of the Royal Statistical Society,
Series B.",
acknowledgement = ack-nhfb,
remark = "Most volumes in this series are unnumbered.",
series-URL = "http://link.springer.com/bookseries/692",
subject = "Multivariate analysis; Multivariate analysis;
Multivariate analyse; An{\'a}lise multivariada;
Multivariate Analyse.",
tableofcontents = "Examples of Multivariate Data \\
Multivariate Data and the Forward Search \\
Data from One Multivariate Distribution \\
Multivariate Transformations to Normality \\
Principal Components Analysis \\
Discriminant Analysis \\
Cluster Analysis \\
Spatial Linear Models",
}
@Article{Bates:2004:BRB,
author = "Samantha C. Bates",
title = "Book Review: {{\booktitle{Introductory Statistics with
R}}}",
journal = j-AMER-STAT,
volume = "58",
number = "1",
pages = "88--??",
month = feb,
year = "2004",
CODEN = "ASTAAJ",
ISSN = "0003-1305 (print), 1537-2731 (electronic)",
ISSN-L = "0003-1305",
bibdate = "Fri Feb 20 06:14:28 MST 2004",
bibsource = "http://www.amstat.org/publications/tas/;
http://www.math.utah.edu/pub/tex/bib/amstat2000.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://oberon.ingentaselect.com/cgi-bin/linker?ini=asa&reqidx=/cw/asa/00031305/v58n1/s20/p88",
acknowledgement = ack-nhfb,
fjournal = "The American Statistician",
journal-URL = "http://www.tandfonline.com/loi/utas20",
}
@Article{Cantoni:2004:RNS,
author = "Eva Cantoni",
title = "Resistant Nonparametric Smoothing with {S-PLUS}",
journal = j-J-STAT-SOFT,
volume = "10",
number = "2",
pages = "1--6",
month = "????",
year = "2004",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sat Dec 04 09:18:40 2004",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/counter.php?id=93&url=v10/i02/Mspline4.pdf&ct=1",
accepted = "2004-04-26",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
submitted = "2002-07-17",
}
@Book{Carmona:2004:SAF,
author = "R. (Ren{\'e}) Carmona",
title = "Statistical analysis of financial data in {S-PLUS}",
publisher = pub-SV,
address = pub-SV:adr,
pages = "xvi + 451",
year = "2004",
ISBN = "0-387-20286-2",
ISBN-13 = "978-0-387-20286-0",
LCCN = "HG106 .C37 2004",
bibdate = "Thu Jul 10 08:12:40 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Springer texts in statistics",
URL = "http://www.loc.gov/catdir/enhancements/fy0818/2003066218-d.html;
http://www.loc.gov/catdir/toc/fy044/2003066218.html",
acknowledgement = ack-nhfb,
remark = "Based on the author's lecture notes for a course at
Princeton University.",
subject = "Finance; Mathematical models; Econometric models;
S-Plus",
}
@Book{Heiberger:2004:SAD,
author = "Richard M. Heiberger and Burt Holland",
title = "Statistical analysis and data display: an intermediate
course with examples in {S-plus}, {R}, and {SAS}",
publisher = pub-SV,
address = pub-SV:adr,
pages = "xxiv + 729",
year = "2004",
ISBN = "0-387-40270-5",
ISBN-13 = "978-0-387-40270-3",
LCCN = "QA276.4 .H445 2004",
bibdate = "Mon Jul 4 16:49:12 MDT 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Springer texts in statistics",
acknowledgement = ack-nhfb,
subject = "Mathematical statistics; Data processing; Statistics;
Data processing; S-Plus; R (Computer programming
language); SAS (Computer file)",
}
@Article{Hojsgaard:2004:MPG,
author = "S{\o}ren H{\o}jsgaard",
title = "The {{\tt mimR}} Package for Graphical Modelling in
{R}",
journal = j-J-STAT-SOFT,
volume = "11",
number = "6",
pages = "1--13",
month = "????",
year = "2004",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sat Dec 04 09:18:40 2004",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/counter.php?id=102&url=v11/i06/v11i06.pdf&ct=1",
accepted = "2004-10-02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
submitted = "2004-07-06",
}
@Article{Horton:2004:URT,
author = "Nicholas J. Horton and Elizabeth R. Brown and Linjuan
Qian",
title = "Use of {R} as a Toolbox for Mathematical Statistics
Exploration",
journal = j-AMER-STAT,
volume = "58",
number = "4",
pages = "343--357",
month = nov,
year = "2004",
CODEN = "ASTAAJ",
DOI = "http://pubs.amstat.org/doi/pdfplus/10.1198/000313004X5572",
ISSN = "0003-1305 (print), 1537-2731 (electronic)",
ISSN-L = "0003-1305",
bibdate = "Fri Jan 27 18:16:35 MST 2012",
bibsource = "http://www.amstat.org/publications/tas/;
http://www.jstor.org/journals/00031305.html;
http://www.jstor.org/stable/i27643578;
http://www.math.utah.edu/pub/tex/bib/amstat2000.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstor.org/stable/27643595",
acknowledgement = ack-nhfb,
fjournal = "The American Statistician",
journal-URL = "http://www.tandfonline.com/loi/utas20",
}
@Book{Huet:2004:STN,
author = "S. (Sylvie) Huet and Annie Bouvier and Marie-Anne
Poursat and Emmanuel Jolivet",
title = "Statistical tools for nonlinear regression: a
practical guide with {S-PLUS} and {R} examples",
publisher = pub-SV,
address = pub-SV:adr,
edition = "Second",
pages = "xiv + 232",
year = "2004",
ISBN = "0-387-40081-8",
ISBN-13 = "978-0-387-40081-5",
LCCN = "QA278.2 .H84 2004",
bibdate = "Mon Jul 4 16:33:45 MDT 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Springer series in statistics",
acknowledgement = ack-nhfb,
subject = "Regression analysis; Nonlinear theories; Parameter
estimation",
}
@Article{Karatzoglou:2004:KSP,
author = "Alexandros Karatzoglou and Alex Smola and Kurt Hornik
and Achim Zeileis",
title = "{\tt kernlab} --- An {S4} Package for Kernel Methods
in {R}",
journal = j-J-STAT-SOFT,
volume = "11",
number = "9",
pages = "1--20",
month = "????",
year = "2004",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sat Dec 04 09:18:40 2004",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/counter.php?id=105&url=v11/i09/v11i09.pdf&ct=1",
accepted = "2004-11-02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
submitted = "2004-08-15",
}
@Article{Leisch:2004:FGF,
author = "Friedrich Leisch",
title = "{FlexMix}: {A} General Framework for Finite Mixture
Models and Latent Class Regression in {R}",
journal = j-J-STAT-SOFT,
volume = "11",
number = "8",
pages = "1--18",
month = "????",
year = "2004",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sat Dec 04 09:18:40 2004",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/counter.php?id=104&url=v11/i08/v11i08.pdf&ct=1",
accepted = "2004-10-18",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
submitted = "2004-04-19",
}
@Article{McNeil:2004:BRB,
author = "Alexander J. McNeil",
title = "Book Review: {{\booktitle{Modeling Financial Time
Series with S-Plus}}, by Eric Zivot; Jiahui Wang}",
journal = j-J-AM-STAT-ASSOC,
volume = "99",
number = "466",
pages = "564--565",
month = apr,
year = "2004",
CODEN = "JSTNAL",
ISSN = "0162-1459 (print), 1537-274X (electronic)",
ISSN-L = "0162-1459",
bibdate = "Wed Jan 25 08:06:28 MST 2012",
bibsource = "http://www.amstat.org/publications/jasa/;
http://www.jstor.org/journals/01621459.html;
http://www.jstor.org/stable/i27590385;
http://www.math.utah.edu/pub/tex/bib/jamstatassoc2000.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://miranda.asa.catchword.org/vl=1515603/cl=66/nw=1/rpsv/cw/asa/01621459/v99n466/s34/p564;
http://www.jstor.org/stable/27590420",
acknowledgement = ack-nhfb,
fjournal = "Journal of the American Statistical Association",
journal-URL = "http://www.tandfonline.com/loi/uasa20",
}
@Book{RDCT:2004:RRM,
author = "{R Development Core Team}",
title = "The {R} reference manual: base package",
publisher = pub-NETWORK-THEORY,
address = pub-NETWORK-THEORY:adr,
pages = "x + 723 (vol. 1), viii + 695 (vol. 2)",
year = "2004",
ISBN = "0-9546120-0-0 (vol. 1), 0-9546120-1-9 (vol. 2)",
ISBN-13 = "978-0-9546120-0-9 (vol. 1), 978-0-9546120-1-6 (vol.
2)",
LCCN = "QA76.7 RRE",
bibdate = "Mon Jul 4 16:38:55 MDT 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
library.ox.ac.uk:210/ADVANCE",
acknowledgement = ack-nhfb,
remark = "Version 1.8.1.",
subject = "R (Computer programming language); Statistics; Data
processing",
}
@Book{Ruppert:2004:SFI,
author = "David Ruppert",
title = "Statistics and finance: an introduction",
publisher = pub-SV,
address = pub-SV:adr,
pages = "xx + 473",
year = "2004",
ISBN = "0-387-20270-6",
ISBN-13 = "978-0-387-20270-9",
LCCN = "HG176.5 .R87 2004",
bibdate = "Fri Jul 25 07:18:07 MDT 2014",
bibsource = "z3950.loc.gov:7090/Voyager",
series = "Springer texts in statistics",
URL = "http://www.loc.gov/catdir/enhancements/fy0818/2003063814-d.html;
http://www.loc.gov/catdir/enhancements/fy0818/2003063814-t.html",
acknowledgement = ack-nhfb,
author-dates = "1948--",
subject = "Finance; Statistical methods; Statistics",
tableofcontents = "1: Introduction \\
2: Probability and statistical models \\
3: Returns \\
4: Time series models \\
5: Portfolio theory \\
6: Regression \\
7: The capital asset pricing model \\
8: Options pricing \\
9: Fixed income securities \\
10: Resampling \\
11: Value-at-risk \\
12: GARCH models \\
13: Nonparametric regression and splines \\
14: Behavioral finance",
abstract = "Emphasizing the applications of statistics and
probability to finance, this book reviews the basics of
probability and statistics, and introduces advanced
topics in statistics, such as regression, ARMA and
GARCH models, and others. It covers the classical
methods of finance such as portfolio theory, CAPM, and
the Black-Scholes formula.",
}
@Book{Venables:2004:IRN,
editor = "W. N. (William N.) Venables",
title = "An introduction to {R}: notes on {R}: a programming
environment for data analysis and graphics, version
1.9.1",
publisher = pub-NETWORK-THEORY,
address = pub-NETWORK-THEORY:adr,
edition = "Second printing, revised and updated",
pages = "vi + 146",
year = "2004",
ISBN = "0-9541617-4-2 (paperback)",
ISBN-13 = "978-0-9541617-4-3 (paperback)",
bibdate = "Mon Jul 4 15:57:52 MDT 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.libris.kb.se:210/libr",
acknowledgement = ack-nhfb,
subject = "R (Computer programming language); Mathematical
statistics; Computer programs",
}
@Article{Wiens:2004:MSP,
author = "Douglas P. Wiens",
title = "{MATCH} --- {A} Software Package for Robust Profile
Matching Using {S-Plus}",
journal = j-J-STAT-SOFT,
volume = "10",
number = "1",
pages = "1--35",
month = "????",
year = "2004",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sat Dec 04 09:18:40 2004",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/counter.php?id=91&url=v10/i01/manual2.pdf&ct=1",
accepted = "2004-04-26",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
submitted = "2002-10-06",
}
@Article{Ziegel:2004:BRBg,
author = "Eric R. Ziegel",
title = "Book Review: {{\booktitle{An R and S-PLUS Companion to
Applied Regression}} by John Fox}",
journal = j-TECHNOMETRICS,
volume = "46",
number = "3",
pages = "371--371",
month = aug,
year = "2004",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/25470872",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:21:00 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i25470840;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics2000.bib",
URL = "http://www.jstor.org/stable/25470872",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Article{Baddeley:2005:SRP,
author = "Adrian Baddeley and Rolf Turner",
title = "{\tt spatstat}: An {R} Package for Analyzing Spatial
Point Patterns",
journal = j-J-STAT-SOFT,
volume = "12",
number = "6",
pages = "1--42",
month = "????",
year = "2005",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed May 18 11:18:51 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/counter.php?id=113&url=v12/i06&ct=2;
http://www.jstatsoft.org/counter.php?id=113&url=v12/i06/v12i06.pdf&ct=1",
accepted = "2005-01-26",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
submitted = "2005-01-26",
}
@Book{Box:2005:SED,
author = "George E. P. Box and J. Stuart Hunter and William
Gordon Hunter",
title = "Statistics for experimenters: design, innovation, and
discovery",
publisher = pub-WILEY-INTERSCIENCE,
address = pub-WILEY-INTERSCIENCE:adr,
edition = "Second",
pages = "xvii + 633",
year = "2005",
ISBN = "0-471-71813-0",
ISBN-13 = "978-0-471-71813-0",
LCCN = "QA279 .B69 2005",
bibdate = "Wed Sep 15 09:42:59 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Wiley series in probability and statistics",
URL = "http://www.loc.gov/catdir/enhancements/fy0619/2004063780-b.html;
http://www.loc.gov/catdir/enhancements/fy0619/2004063780-d.html;
http://www.loc.gov/catdir/toc/wiley051/2004063780.html;
http://www.wiley.com/WileyCDA/WileyTitle/productCd-0471718130.html",
acknowledgement = ack-nhfb,
subject = "experimental design; analysis of variance;
mathematical statistics",
}
@Article{Brezger:2005:BAB,
author = "Andreas Brezger and Thomas Kneib and Stefan Lang",
title = "{BayesX}: Analyzing {Bayesian} Structural Additive
Regression Models",
journal = j-J-STAT-SOFT,
volume = "14",
number = "11",
pages = "1--22",
day = "9",
month = sep,
year = "2005",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Dec 12 11:09:58 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/counter.php?id=136&url=v14/i11&ct=2;
http://www.jstatsoft.org/counter.php?id=136&url=v14/i11/v14i11.pdf&ct=1",
abstract = "There has been much recent interest in Bayesian
inference for generalized additive and related models.
The increasing popularity of Bayesian methods for these
and other model classes is mainly caused by the
introduction of Markov chain Monte Carlo (MCMC)
simulation techniques which allow realistic modeling of
complex problems. This paper describes the capabilities
of the free software package {\tt BayesX} for
estimating regression models with structured additive
predictor based on MCMC inference. The program extends
the capabilities of existing software for
semiparametric regression included in S-PLUS, SAS, R or
Stata. Many model classes well known from the
literature are special cases of the models supported by
BayesX. Examples are generalized additive (mixed)
models, dynamic models, varying coefficient models,
geoadditive models, geographically weighted regression
and models for space-time regression. BayesX supports
the most common distributions for the response
variable. For univariate responses these are Gaussian,
Binomial, Poisson, Gamma, negative Binomial, zero
inflated Poisson and zero inflated negative binomial.
For multicategorical responses, both multinomial logit
and probit models for unordered categories of the
response as well as cumulative threshold models for
ordered categories can be estimated. Moreover, BayesX
allows the estimation of complex continuous time
survival and hazard rate models.",
accepted = "2005-09-09",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
keywords = "geoadditive models; MCMC; mixed models; space-time
regression; structured additive regression",
submitted = "2004-06-18",
}
@Article{Buttrey:2005:CLL,
author = "Samuel E. Buttrey",
title = "Calling the {\tt lp\_solve} Linear Program Software
from {R}, {S-PLUS} and {Excel}",
journal = j-J-STAT-SOFT,
volume = "14",
number = "4",
pages = "1--13",
day = "1",
month = may,
year = "2005",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed May 18 11:18:51 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/counter.php?id=129&url=v14/i04&ct=2;
http://www.jstatsoft.org/counter.php?id=129&url=v14/i04/v14i04.pdf&ct=1",
accepted = "2005-05-01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
submitted = "2005-05-01",
}
@Book{Crawley:2005:SIU,
author = "Michael J. Crawley",
title = "Statistics: an introduction using {R}",
publisher = pub-WILEY,
address = pub-WILEY:adr,
pages = "xiii + 327",
year = "2005",
ISBN = "0-470-02297-3 (hardback), 0-470-02298-1 (paperback)",
ISBN-13 = "978-0-470-02297-9 (hardback), 978-0-470-02298-6
(paperback)",
LCCN = "QA276.12 .C73 2005",
bibdate = "Mon Jul 4 16:35:33 MDT 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
URL = "ftp://uiarchive.cso.uiuc.edu/pub/etext/gutenberg/;
http://www.imperial.ac.uk/bio/research/crawley/statistics;
http://www.loc.gov/catdir/toc/ecip053/2004026793.html",
acknowledgement = ack-nhfb,
subject = "Mathematical statistics; Textbooks; R (Computer
programming language)",
}
@Article{Dejean:2005:FRP,
author = "S{\'e}bastien D{\'e}jean and Serge Cohen",
title = "{FracSim}: An {R} Package to Simulate Multifractional
{L{\'e}vy} Motions",
journal = j-J-STAT-SOFT,
volume = "14",
number = "18",
pages = "1--19",
month = dec,
year = "2005",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v14/i18",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2005-10-06; Accepted 2005-12-08",
}
@Article{deLeeuw:2005:BRBa,
author = "Jan de Leeuw",
title = "Book Review: {{\booktitle{Correspondence Analysis and
Data Coding with Java and R}}}",
journal = j-J-STAT-SOFT,
volume = "14",
number = "BR-5",
pages = "1--2",
month = sep,
year = "2005",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v14/b05",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2005-09-08; Accepted 2005-09-08",
}
@Article{deLeeuw:2005:BRBb,
author = "Jan de Leeuw",
title = "Book Review: {{\booktitle{An R and S-PLUS Companion to
Multivariate Analysis}}}",
journal = j-J-STAT-SOFT,
volume = "14",
number = "BR-6",
pages = "1--3",
month = sep,
year = "2005",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v14/b06",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2005-09-16; Accepted 2005-09-16",
}
@Article{Dias:2005:SAF,
author = "Alexandra Dias",
title = "Statistical Analysis of Financial Data in {S-Plus}",
journal = j-AMER-STAT,
volume = "59",
number = "4",
pages = "351--351",
month = nov,
year = "2005",
CODEN = "ASTAAJ",
DOI = "http://pubs.amstat.org/doi/pdfplus/10.1198/tas.2005.s34",
ISSN = "0003-1305 (print), 1537-2731 (electronic)",
ISSN-L = "0003-1305",
bibdate = "Thu Aug 26 21:48:26 MDT 2010",
bibsource = "http://www.amstat.org/publications/tas/;
http://www.math.utah.edu/pub/tex/bib/amstat2000.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
fjournal = "The American Statistician",
journal-URL = "http://www.tandfonline.com/loi/utas20",
}
@Book{Everitt:2005:RPC,
author = "Brian S. Everitt",
title = "An {R} and {S-PLUS} companion to multivariate
analysis",
publisher = pub-SV,
address = pub-SV:adr,
pages = "xiii + 221",
year = "2005",
ISBN = "1-85233-882-2",
ISBN-13 = "978-1-85233-882-4",
LCCN = "QA278 .E926 2005",
bibdate = "Mon Jul 4 16:31:29 MDT 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Springer texts in statistics",
acknowledgement = ack-nhfb,
subject = "Multivariate analysis; S-Plus; R (Computer program
language)",
}
@Book{Faraway:2005:LMR,
author = "Julian James Faraway",
title = "Linear models with {R}",
volume = "63",
publisher = pub-CHAPMAN-HALL-CRC,
address = pub-CHAPMAN-HALL-CRC:adr,
pages = "x + 229",
year = "2005",
ISBN = "1-58488-425-8",
ISBN-13 = "978-1-58488-425-5",
LCCN = "QA279 .F37 2005",
bibdate = "Mon Jul 4 16:28:36 MDT 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Texts in statistical science",
acknowledgement = ack-nhfb,
subject = "Analysis of variance; Regression analysis",
}
@Article{Firth:2005:BTM,
author = "David Firth",
title = "{Bradley--Terry} Models in {R}",
journal = j-J-STAT-SOFT,
volume = "12",
number = "1",
pages = "1--12",
month = "????",
year = "2005",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed May 18 11:18:51 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/counter.php?id=107&url=v12/i01&ct=2;
http://www.jstatsoft.org/counter.php?id=107&url=v12/i01/v12i01.pdf&ct=1",
accepted = "2005-01-07",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
submitted = "2005-01-07",
}
@Article{Fox:2005:BRB,
author = "John Fox",
title = "Book Review: {{\booktitle{The Basics of S-Plus, Fourth
Edition}}}",
journal = j-J-STAT-SOFT,
volume = "14",
number = "BR-8",
pages = "1--3",
month = dec,
year = "2005",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v14/b08",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2005-12-15; Accepted 2005-12-15",
}
@Article{Fox:2005:RCB,
author = "John Fox",
title = "The {R Commander}: {A} Basic-Statistics Graphical User
Interface to {R}",
journal = j-J-STAT-SOFT,
volume = "14",
number = "9",
pages = "1--42",
day = "19",
month = aug,
year = "2005",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Dec 12 11:09:58 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/counter.php?id=134&url=v14/i09&ct=2;
http://www.jstatsoft.org/counter.php?id=134&url=v14/i09/v14i09.pdf&ct=1",
abstract = "Unlike S-PLUS, R does not incorporate a statistical
graphical user interface (GUI), but it does include
tools for building GUIs. Based on the {\tt tcltk}
package (which furnishes an interface to the Tcl/Tk GUI
toolkit), the {\tt Rcmdr} package provides a
basic-statistics graphical user interface to R called
the R Commander. The design objectives of the R
Commander were as follows: to support, through an
easy-to-use, extensible, crossplatform GUI, the
statistical functionality required for a
basic-statistics course (though its current
functionality has grown to include support for linear
and generalized-linear models, and other more advanced
features); to make it relatively di cult to do
unreasonable things; and to render visible the
relationship between choices made in the GUI and the R
commands that they generate. The R Commander uses a
simple and familiar menu/dialog-box interface.
Top-level menus include File, Edit, Data, Statistics,
Graphs, Models, Distributions, Tools, and Help, with
the complete menu tree given in the paper. Each dialog
box includes a Help button, which leads to a relevant
help page. Menu and dialog-box selections generate R
commands, which are recorded in a script window and are
echoed, along with output, to an output window. The
script window also provides the ability to edit, enter,
and re-execute commands. Error messages, warnings, and
some other information appear in a separate messages
window. Data sets in the R Commander are simply R data
frames, and can be read from attached packages or
imported from files. Although several data frames may
reside in memory, only one is active at any given time.
There may also be an active statistical model (e.g., an
R lm or glm object). The purpose of this paper is to
introduce and describe the use of the R Commander GUI;
to describe the design and development of the R
Commander; and to explain how the R Commander GUI can
be extended. The second part of the paper (following a
brief introduction) can serve as an introductory guide
for students who will use the R Commander",
accepted = "2005-08-19",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
keywords = "R language; statistical education; statistical GUI;
statistical software",
submitted = "2004-07-22",
}
@Book{Gentleman:2005:BCB,
editor = "Robert Gentleman and Rafael A. Irizarry and Wolfgang
Huber and Sandrine Dudoit and Vincent J. Carey",
title = "Bioinformatics and computational biology solutions
using {R} and {Bioconductor}",
publisher = "Springer Science+Business Media",
address = "New York, NY, USA",
pages = "xix + 473",
year = "2005",
ISBN = "0-387-25146-4",
ISBN-13 = "978-0-387-25146-2",
LCCN = "QH324.2 .B5473 2005",
bibdate = "Thu Jul 10 08:33:13 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Statistics for biology and health",
URL = "http://www.loc.gov/catdir/enhancements/fy0662/2005923843-d.html;
http://www.loc.gov/catdir/enhancements/fy0818/2005923843-t.html",
acknowledgement = ack-nhfb,
subject = "Bioinformatics; Bioconductor (Computer file); R
(Computer program language)",
tableofcontents = "Sequence databases / Rolf Apweiler \\
Mapping databases / Tara Matise and Peter S. White \\
Information retrieval from biological databases /
Andreas D. Baxevanis \\
Genomic databases / Tyra Wolfsberg \\
Predictive methods using DNA sequences / Roderic
Guig{\'o} and Enrique Blanco \\
Predictive methods using RNA sequences / Michael Zucker
and David Mathews \\
Sequence polymorphisms / James C. Mullikin and Stephen
T. Sherry \\
Predictive methods using protein sequences / Burkhard
Rost and Yanay Ofran \\
Protein structure prediction and analysis / David
Wishart \\
Intermolecular interactions and biological pathways /
Gary D. Bader and Anton J. Enright \\
Assessing pairwise sequence similarity: blast and fasta
/ Andreas D. Baxevanis \\
Creation and analysis of protein multiple sequence
alignments / Geoffrey J. Barton \\
Sequence assembly and finishing methods / Gerard
Bouffard, Nancy F. Hansen, and Pamela Jacques Thomas
\\
Phylogenetic analysis / Fiona S. L. Brinkman \\
Computational approaches in comparative genomics /
Andreas D. Baxevanis \\
Microarray analysis / John Quackenbush \\
Proteomics and protein identification / Michael
Giddings, Mark R. Holmes, and Kevin Ramkissoon \\
Using perl to facilitate biological analysis / Lincoln
D. Stein",
}
@Book{Good:2005:IST,
author = "Phillip I. Good",
title = "Introduction to statistics through resampling methods
and {R/S-PLUS}",
publisher = pub-WILEY-INTERSCIENCE,
address = pub-WILEY-INTERSCIENCE:adr,
pages = "xii + 229",
year = "2005",
ISBN = "0-471-71575-1 (paperback)",
ISBN-13 = "978-0-471-71575-7 (paperback)",
LCCN = "QA278.8 .G63 2005",
bibdate = "Thu Oct 20 05:47:15 MDT 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
URL = "ftp://uiarchive.cso.uiuc.edu/pub/etext/gutenberg/;
http://www.loc.gov/catdir/toc/wiley051/2004061922.html",
acknowledgement = ack-nhfb,
subject = "Resampling (Statistics); S-Plus",
}
@Article{Gould:2005:BRB,
author = "Robert Gould",
title = "Book Review: {{\booktitle{Using R for Introductory
Statistics}}}",
journal = j-J-STAT-SOFT,
volume = "14",
number = "BR-7",
pages = "1--3",
month = nov,
year = "2005",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v14/b07",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2005-11-09; Accepted 2005-11-09",
}
@Article{Hankin:2005:IBR,
author = "Robin K. S. Hankin",
title = "Introducing {BACCO}, an {R} Bundle for {Bayesian}
Analysis of Computer Code Output",
journal = j-J-STAT-SOFT,
volume = "14",
number = "16",
pages = "1--21",
day = "19",
month = oct,
year = "2005",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Dec 12 11:09:58 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/counter.php?id=141&url=v14/i16&ct=2;
http://www.jstatsoft.org/counter.php?id=141&url=v14/i16/v14i16.pdf&ct=1",
abstract = "This paper introduces the BACCO bundle of R routines
for carrying out Bayesian analysis of computer code
output. The bundle comprises packages {\tt emulator}
and {\tt calibrator}, computerized implementations of
the ideas of Oakley and O Hagan (2002) and Kennedy and
O Hagan (2001a) respectively. The bundle is
self-contained and fully documented R code, and
includes a toy dataset that furnishes a working example
of the functions.\par
Package {\tt emulator} carries out Bayesian emulation
of computer code output; package {\tt calibrator}
allows the incorporation of observational data into
model calibration using Bayesian techniques.\par
The package is then applied to a dataset taken from
climate science.",
accepted = "2005-10-19",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
keywords = "Bayesian analysis; climate modelling; uncertainty in
climate prediction",
submitted = "2005-06-09",
}
@Article{Hin:2005:ACD,
author = "Lin Yee Hin and Vincent Carey",
title = "An Algorithm for Clustered Data Generalized Additive
Modelling with {S-PLUS}",
journal = j-J-STAT-SOFT,
volume = "14",
number = "8",
pages = "1--24",
day = "31",
month = aug,
year = "2005",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Dec 12 11:09:58 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/counter.php?id=133&url=v14/i08&ct=2;
http://www.jstatsoft.org/counter.php?id=133&url=v14/i08/v14i08.pdf&ct=1",
abstract = "We present a set of functions in S-PLUS to implement
the clustered data generalized additive marginal
modelling (CDGAM) strategy proposed by Berhane and
Tibshirani (1998). A variety of working correlation
structures are supported, and the regression basis may
include components from the family of smoothing
splines.",
accepted = "2005-08-31",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
keywords = "clustered data analysis; generalized estimating
equations",
submitted = "2005-01-27",
}
@Article{Hojsgaard:2005:RPG,
author = "S{\o}ren H{\o}jsgaard and Ulrich Halekoh and Jun Yan",
title = "The {R} Package {\tt geepack} for Generalized
Estimating Equations",
journal = j-J-STAT-SOFT,
volume = "15",
number = "2",
pages = "1--11",
month = dec,
year = "2005",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v15/i02",
abstract = "This paper describes the core features of the R
package {\tt geepack}, which implements the generalized
estimating equations (GEE) approach for fitting
marginal generalized linear models to clustered data.
Clustered data arise in many applications such as
longitudinal data and repeated measures. The GEE
approach focuses on models for the mean of the
correlated observations within clusters without fully
specifying the joint distribution of the observations.
It has been widely used in statistical practice. This
paper illustrates the application of the GEE approach
with {\tt geepack} through an example of clustered
binary data.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2005-06-17; Accepted 2005-12-22",
}
@Article{Imai:2005:MRP,
author = "Kosuke Imai and David A. {Van Dyk}",
title = "{{\tt MNP}}: {R} Package for Fitting the {Multinomial
Probit Model}",
journal = j-J-STAT-SOFT,
volume = "14",
number = "3",
pages = "1--32",
day = "8",
month = may,
year = "2005",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed May 18 11:18:51 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/counter.php?id=128&url=v14/i03&ct=2;
http://www.jstatsoft.org/counter.php?id=128&url=v14/i03/v14i03.pdf&ct=1",
accepted = "2005-05-08",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
submitted = "2005-05-08",
}
@Article{Johnstone:2005:ERP,
author = "Iain M. Johnstone and Bernard W. Silverman",
title = "{EbayesThresh}: {R} Programs for Empirical {Bayes}
Thresholding",
journal = j-J-STAT-SOFT,
volume = "12",
number = "8",
pages = "1--38",
month = "????",
year = "2005",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed May 18 11:18:51 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/counter.php?id=125&url=v12/i08&ct=2;
http://www.jstatsoft.org/counter.php?id=125&url=v12/i08/v12i08.pdf&ct=1",
accepted = "2005-04-06",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
submitted = "2005-04-06",
}
@Article{Karlis:2005:BPD,
author = "Dimitris Karlis and Ioannis Ntzoufras",
title = "Bivariate {Poisson} and Diagonal Inflated Bivariate
{Poisson} Regression Models in {R}",
journal = j-J-STAT-SOFT,
volume = "14",
number = "10",
pages = "1--36",
day = "5",
month = sep,
year = "2005",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Dec 12 11:09:58 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/counter.php?id=135&url=v14/i10&ct=2;
http://www.jstatsoft.org/counter.php?id=135&url=v14/i10/v14i10.pdf&ct=1",
abstract = "In this paper we present an R package called {\tt
bivpois} for maximum likelihood estimation of the
parameters of bivariate and diagonal inflated bivariate
Poisson regression models. An Expectation-Maximization
(EM) algorithm is implemented. Inflated models allow
for modelling both over-dispersion (or
under-dispersion) and negative correlation and thus
they are appropriate for a wide range of applications.
Extensions of the algorithms for several other models
are also discussed. Detailed guidance and
implementation on simulated and real data sets using
{\tt bivpois} package is provided.",
accepted = "2005-09-05",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
keywords = "bivariate Poisson distribution; EM algorithm;
multivariate count data; R functions; zero and diagonal
inflated models",
submitted = "2003-11-14",
}
@Book{Krause:2005:BP,
author = "Andreas Krause",
title = "The basics of {S-Plus}",
publisher = pub-SV,
address = pub-SV:adr,
edition = "Fourth",
pages = "xxii + 442",
year = "2005",
ISBN = "0-387-26109-5",
ISBN-13 = "978-0-387-26109-6",
LCCN = "QA276.4 .K73 2005",
bibdate = "Thu Oct 20 05:47:11 MDT 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
sirsi.library.utoronto.ca:2200/UNICORN;
z3950.loc.gov:7090/Voyager",
series = "Statistics, computing",
acknowledgement = ack-nhfb,
}
@Book{Murtagh:2005:CAD,
author = "Fionn Murtagh",
title = "Correspondence analysis and data coding with {Java}
and {R}",
publisher = pub-CHAPMAN-HALL-CRC,
address = pub-CHAPMAN-HALL-CRC:adr,
pages = "230",
year = "2005",
ISBN = "1-58488-528-9",
ISBN-13 = "978-1-58488-528-3",
LCCN = "QA76.73.J38 M877 2005",
bibdate = "Wed Jul 9 11:11:42 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/java2000.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Computer science and data analysis series",
URL = "http://www.loc.gov/catdir/enhancements/fy0648/2005041353-d.html",
acknowledgement = ack-nhfb,
remark = "Foreword by J.-P. Benz{\'e}cri.",
subject = "Java (Computer program language); R (Computer program
language); Correspondence analysis (Statistics)",
}
@Article{Narasimhan:2005:LSJ,
author = "Balasubramanian Narasimhan",
title = "{Lisp--Stat} to {Java} to {R}",
journal = j-J-STAT-SOFT,
volume = "13",
number = "4",
pages = "1--10",
month = "????",
year = "2005",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed May 18 11:18:51 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/counter.php?id=118&url=v13/i04&ct=2;
http://www.jstatsoft.org/counter.php?id=118&url=v13/i04/v13i04.pdf&ct=1",
accepted = "0000-00-00",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
remark = "Special Volume: Lisp--Stat, Past, Present and Future.
Pedro Valero-Mora and Frederic Udina, Guest Editors.",
submitted = "0000-00-00",
}
@Article{Prins:2005:LMR,
author = "Samantha C. Bates Prins",
title = "Linear Models with {R}",
journal = j-AMER-STAT,
volume = "59",
number = "3",
pages = "276--276",
month = aug,
year = "2005",
CODEN = "ASTAAJ",
DOI = "http://pubs.amstat.org/doi/pdfplus/10.1198/tas.2005.s247",
ISSN = "0003-1305 (print), 1537-2731 (electronic)",
ISSN-L = "0003-1305",
bibdate = "Thu Aug 26 21:48:26 MDT 2010",
bibsource = "http://www.amstat.org/publications/tas/;
http://www.math.utah.edu/pub/tex/bib/amstat2000.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
fjournal = "The American Statistician",
journal-URL = "http://www.tandfonline.com/loi/utas20",
}
@Article{Prins:2005:SAD,
author = "Samantha C. Bates Prins",
title = "Statistical Analysis and Data Display: An Intermediate
Course with Examples in {S-Plus}, {R}, and {SAS}",
journal = j-AMER-STAT,
volume = "59",
number = "3",
pages = "275--276",
month = aug,
year = "2005",
CODEN = "ASTAAJ",
DOI = "http://pubs.amstat.org/doi/pdfplus/10.1198/tas.2005.s246",
ISSN = "0003-1305 (print), 1537-2731 (electronic)",
ISSN-L = "0003-1305",
bibdate = "Thu Aug 26 21:48:26 MDT 2010",
bibsource = "http://www.amstat.org/publications/tas/;
http://www.math.utah.edu/pub/tex/bib/amstat2000.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
fjournal = "The American Statistician",
journal-URL = "http://www.tandfonline.com/loi/utas20",
}
@Article{Ritz:2005:BAU,
author = "Christian Ritz and Jens C. Streibig",
title = "Bioassay Analysis Using {R}",
journal = j-J-STAT-SOFT,
volume = "12",
number = "5",
pages = "1--22",
month = "????",
year = "2005",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed May 18 11:18:51 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/counter.php?id=112&url=v12/i05&ct=2;
http://www.jstatsoft.org/counter.php?id=112&url=v12/i05/v12i05.pdf&ct=1",
accepted = "2005-01-19",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
submitted = "2005-01-19",
}
@Article{Robinson:2005:BRB,
author = "Timothy J. Robinson",
title = "Book Review: {{\booktitle{Linear Models with R}} by
Julian J. Faraway}",
journal = j-TECHNOMETRICS,
volume = "47",
number = "3",
pages = "372--373",
month = aug,
year = "2005",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/25471031",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:21:06 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i25471016;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics2000.bib",
URL = "http://www.jstor.org/stable/25471031",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Book{Rossi:2005:BSM,
author = "Peter E. (Peter Eric) Rossi and Greg M. (Greg Martin)
Allenby and Robert E. (Robert Edward) McCulloch",
title = "{Bayesian} statistics and marketing",
publisher = pub-WILEY,
address = pub-WILEY:adr,
pages = "x + 348",
year = "2005",
ISBN = "0-470-86367-6",
ISBN-13 = "978-0-470-86367-1",
LCCN = "HF5415.2 .R675 2005",
bibdate = "Wed Sep 15 09:41:11 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
URL = "http://www.loc.gov/catdir/enhancements/fy0622/2005016418-d.html;
http://www.loc.gov/catdir/toc/ecip0514/2005016418.html;
http://www.wiley.com/WileyCDA/WileyTitle/productCd-0470863676.html",
acknowledgement = ack-nhfb,
subject = "marketing research; mathematical models; marketing;
Bayesian statistical decision theory; R (computer
programming language); bayesm (R package)",
}
@Book{Scherer:2005:IMP,
author = "Bernd Michael Scherer and R. Douglas Martin",
title = "Introduction to modern portfolio optimization with
{NuOPT} and {S-PLUS}",
publisher = pub-SV,
address = pub-SV:adr,
pages = "xxi + 405",
year = "2005",
ISBN = "0-387-21016-4",
ISBN-13 = "978-0-387-21016-2",
LCCN = "HG4529.5 .S325 2005",
bibdate = "Thu Oct 20 05:47:12 MDT 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
acknowledgement = ack-nhfb,
subject = "Portfolio management; Data processing",
}
@Book{Seefeld:2005:RB,
author = "Kim Seefeld and Ernst Linder",
title = "{R} for Bioinformatics",
publisher = pub-ORA-MEDIA,
address = pub-ORA-MEDIA:adr,
pages = "320 (est.)",
year = "2005",
ISBN = "0-596-00544-X",
ISBN-13 = "978-0-596-00544-3",
LCCN = "????",
bibdate = "Mon Jul 04 16:50:00 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
}
@Article{Smith:2005:JES,
author = "Christina D. Smith and Jeffrey S. Pontius",
title = "Jackknife Estimator of Species Richness with
{S-PLUS}",
journal = j-J-STAT-SOFT,
volume = "15",
number = "3",
pages = "1--12",
month = dec,
year = "2005",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v15/i03",
abstract = "An estimate of the number of species, $S$, usually
called species richness by ecologists, in an area is
one of the basic statistics used to ascertain
biological diversity. Traditionally ecologists have
used the number of species observed in a sample, $
S_0$, to estimate $S$, realizing that $ S_0$ is a lower
bound for $S$. One alternative to $ S_0$ is to use a
nonparametric procedure such as jackknife resampling.
For species richness, a closed form of the jackknife
estimator is available. Typically statistical software
contains only the traditional iterative form of the
jackknife estimator. The purpose of this article is to
propose an S-PLUS function for calculating the
noniterative first order jackknife estimator of species
richness and some associated plots and statistics.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2004-09-30; Accepted 2005-12-05",
}
@Article{Stoll:2005:WRS,
author = "Heather Stoll and Gary King and Langche Zeng",
title = "{WhatIf}: {R} Software for Evaluating
Counterfactuals",
journal = j-J-STAT-SOFT,
volume = "15",
number = "4",
pages = "1--18",
month = dec,
year = "2005",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v15/i04",
abstract = "WhatIf is an R package that implements the methods for
evaluating counterfactuals introduced in King and Zeng
(2006a) and King and Zeng (2006b). It offers
easy-to-use techniques for assessing a counterfactual's
model dependence without having to conduct sensitivity
testing over specified classes of models. These same
methods can be used to approximate the common support
of the treatment and control groups in causal
inference.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2005-11-09; Accepted 2005-12-10",
}
@Article{Sturtz:2005:RPR,
author = "Sibylle Sturtz and Uwe Ligges and Andrew Gelman",
title = "{{\tt R2WinBUGS}}: {A} Package for Running {WinBUGS}
from {R}",
journal = j-J-STAT-SOFT,
volume = "12",
number = "3",
pages = "1--16",
month = "????",
year = "2005",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed May 18 11:18:51 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/counter.php?id=110&url=v12/i03&ct=2;
http://www.jstatsoft.org/counter.php?id=110&url=v12/i03/v12i03.pdf&ct=1",
accepted = "2005-01-07",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
submitted = "2005-01-07",
}
@Article{Terpstra:2005:RBA,
author = "Jeff T. Terpstra and Joseph W. McKean",
title = "Rank-Based Analysis of Linear Models Using {R}",
journal = j-J-STAT-SOFT,
volume = "14",
number = "7",
pages = "1--26",
day = "1",
month = jul,
year = "2005",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Dec 12 11:09:58 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/counter.php?id=132&url=v14/i07&ct=2;
http://www.jstatsoft.org/counter.php?id=132&url=v14/i07/v14i07.pdf&ct=1",
abstract = "It is well-known that Wilcoxon procedures out perform
least squares procedures when the data deviate from
normality and/or contain outliers. These procedures can
be generalized by introducing weights; yielding
so-called weighted Wilcoxon (WW) techniques. In this
paper we demonstrate how WW-estimates can be calculated
using an L1 regression routine. More importantly, we
present a collection of functions that can be used to
implement a robust analysis of a linear model based on
WW-estimates. For instance, estimation, tests of linear
hypotheses, residual analyses, and diagnostics to
detect differences in fits for various weighting
schemes are discussed. We analyze a regression model,
designed experiment, and autoregressive time series
model for the sake of illustration. We have chosen to
implement the suite of functions using the R
statistical software package. Because R is freely
available and runs on multiple platforms, WW-estimation
and associated inference is now universally
accessible.",
accepted = "2005-07-01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
keywords = "estimation; inference; linear models; R functions;
rank-based procedures; robust; weighted Wilcoxon
estimates",
submitted = "2004-04-06",
}
@Article{Utlaut:2005:BRB,
author = "Theresa L. Utlaut",
title = "Book Review: {{\booktitle{Statistical Analysis and
Data Display: An Intermediate Course with Examples in
S-PLUS. R, and SAS}} by Richard M. Heiberger; Burt
Holland}",
journal = j-TECHNOMETRICS,
volume = "47",
number = "3",
pages = "371--371",
month = aug,
year = "2005",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/25471029",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:21:06 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i25471016;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics2000.bib",
URL = "http://www.jstor.org/stable/25471029",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Book{Verzani:2005:URI,
author = "John Verzani",
title = "Using {R} for introductory statistics",
publisher = pub-CHAPMAN-HALL-CRC,
address = pub-CHAPMAN-HALL-CRC:adr,
pages = "xvi + 414",
year = "2005",
ISBN = "1-58488-450-9",
ISBN-13 = "978-1-58488-450-7",
LCCN = "QA276.4 .V47 2005",
bibdate = "Mon Jul 4 16:32:30 MDT 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
acknowledgement = ack-nhfb,
subject = "Statistics; Data processing; R (Computer program
language)",
}
@Article{Woodward:2005:BBC,
author = "Phil Woodward",
title = "{BugsXLA}: {Bayes} for the {Common Man}",
journal = j-J-STAT-SOFT,
volume = "14",
number = "5",
pages = "1--18",
day = "31",
month = jan,
year = "2005",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed May 18 11:18:51 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/counter.php?id=130&url=v14/i05&ct=2;
http://www.jstatsoft.org/counter.php?id=130&url=v14/i05/v14i05.pdf&ct=1",
abstract = "The absence of user-friendly software has long been a
major obstacle to the routine application of Bayesian
methods in business and industry. It will only be
through widespread application of the Bayesian approach
to real problems that issues, such as the use of prior
distributions, can be practically resolved in the same
way that the choice of significance levels has been in
the classical approach; although most Bayesians would
hope for a much more satisfactory resolution. It is
only relatively recently that any general purpose
Bayesian software has been available; by far the most
widely used such package is {\tt WinBUGS}. Although
this software has been designed to enable an extremely
wide variety of models to be coded relatively easily,
it is unlikely that many will bother to learn the
language and its nuances unless they are already highly
motivated to try Bayesian methods. This paper describes
a graphical user interface, programmed by the author,
which facilitates the specification of a wide class of
generalised linear mixed models for analysis using
WinBUGS. The program, BugsXLA (v2.1), is an Excel
Add-In that not only allows the user to specify a model
as one would in a package such as SAS or S-PLUS, but
also aids the specification of priors and control of
the MCMC run itself. Inevitably, developing a program
such as this forces one to think again about such
issues as choice of default priors, parameterisation
and assessing convergence. I have tried to adopt
currently perceived good practices, but mainly share my
approach so that others can apply it and, through
constructive criticism, play a small part in the
ultimate development of the first Bayesian software
package truly usable by the average data analyst.",
accepted = "2005-01-31",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
keywords = "Bayesian analysis; GLMM; graphical user interface;
Microsoft Excel; WinBUGS",
submitted = "2005-01-31",
}
@Article{Ziegel:2005:BRBb,
author = "Eric R. Ziegel",
title = "Book Review: {{\booktitle{Statistical Analysis of
Financial Data in S-PLUS}} by Ren{\'e} A. Carmona}",
journal = j-TECHNOMETRICS,
volume = "47",
number = "2",
pages = "242--243",
month = may,
year = "2005",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/25471002",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:21:05 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i25470971;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics2000.bib",
URL = "http://www.jstor.org/stable/25471002",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Book{Zivot:2005:MFT,
author = "Eric Zivot",
title = "Modeling financial time series with {S-Plus}",
publisher = pub-SV,
address = pub-SV:adr,
edition = "Second",
pages = "????",
year = "2005",
ISBN = "0-387-27965-2",
ISBN-13 = "978-0-387-27965-7",
bibdate = "Thu Oct 20 05:47:17 MDT 2005",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
acknowledgement = ack-nhfb,
}
@Article{Anonymous:2006:BBP,
author = "Anonymous",
title = "{{\booktitle{The Basics of S-PLUS}} by Andreas Krause;
Melvin Olson}",
journal = j-TECHNOMETRICS,
volume = "48",
number = "2",
pages = "314--314",
month = may,
year = "2006",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/25471184",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:21:10 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i25471152;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics2000.bib",
URL = "http://www.jstor.org/stable/25471184",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Article{Anonymous:2006:BRBam,
author = "Anonymous",
title = "Book Review: {{\booktitle{A Handbook of Statistical
Analysis Using R}} by Brian Everitt; Torster
Northorn}",
journal = j-TECHNOMETRICS,
volume = "48",
number = "4",
pages = "577--577",
month = nov,
year = "2006",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/25471266",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:21:14 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i25471234;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics2000.bib",
URL = "http://www.jstor.org/stable/25471266",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Article{Bullard:2006:BRB,
author = "James Bullard",
title = "Book Review: {{\booktitle{R Graphics}}}",
journal = j-J-STAT-SOFT,
volume = "16",
number = "BR-7",
pages = "1--3",
month = oct,
year = "2006",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v16/b07",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-10-11; Accepted 2006-10-11",
}
@Article{Culp:2006:ARP,
author = "Mark Culp and Kjell Johnson and George Michailides",
title = "{\tt ada}: An {R} Package for Stochastic Boosting",
journal = j-J-STAT-SOFT,
volume = "17",
number = "2",
pages = "1--27",
month = sep,
year = "2006",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v17/i02",
abstract = "Boosting is an iterative algorithm that combines
simple classification rules with ``mediocre''
performance in terms of misclassification error rate to
produce a highly accurate classification rule.
Stochastic gradient boosting provides an enhancement
which incorporates a random mechanism at each boosting
step showing an improvement in performance and speed in
generating the ensemble. {\tt ada} is an R package that
implements three popular variants of boosting, together
with a version of stochastic gradient boosting. In
addition, useful plots for data analytic purposes are
provided along with an extension to the multi-class
case. The algorithms are illustrated with synthetic and
real data sets.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2005-07-13; Accepted 2007-07-13",
}
@Article{deLeeuw:2006:BRB,
author = "Jan de Leeuw",
title = "Book Review: {{\booktitle{Robust Statistical Methods
with R}}}",
journal = j-J-STAT-SOFT,
volume = "16",
number = "BR-2",
pages = "1--2",
month = jul,
year = "2006",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v16/b02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-07-07; Accepted 2006-07-07",
}
@Article{Dethlefsen:2006:FSS,
author = "Claus Dethlefsen and S{\o}ren Lundbye-Christensen",
title = "Formulating State Space Models in {R} with Focus on
Longitudinal Regression Models",
journal = j-J-STAT-SOFT,
volume = "16",
number = "1",
pages = "1--15",
month = apr,
year = "2006",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v16/i01",
abstract = "We provide a language for formulating a range of state
space models with response densities within the
exponential family. The described methodology is
implemented in the R-package sspir. A state space model
is specified similarly to a generalized linear model in
R, and then the time-varying terms are marked in the
formula. Special functions for specifying polynomial
time trends, harmonic seasonal patterns, unstructured
seasonal patterns and time-varying covariates can be
used in the formula. The model is fitted to data using
iterated extended Kalman filtering, but the formulation
of models does not depend on the implemented method of
inference. The package is demonstrated on three
datasets.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2005-05-25; Accepted 2006-04-26",
}
@Article{Dinov:2006:SSO,
author = "Ivo D. Dinov",
title = "{SOCR}: Statistics Online Computational Resource",
journal = j-J-STAT-SOFT,
volume = "16",
number = "11",
pages = "1--16",
month = oct,
year = "2006",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v16/i11",
abstract = "The need for hands-on computer laboratory experience
in undergraduate and graduate statistics education has
been firmly established in the past decade. As a result
a number of attempts have been undertaken to develop
novel approaches for problem-driven statistical
thinking, data analysis and result interpretation. In
this paper we describe an integrated educational
web-based framework for: interactive distribution
modeling, virtual online probability experimentation,
statistical data analysis, visualization and
integration. Following years of experience in
statistical teaching at all college levels using
established licensed statistical software packages,
like STATA, S-PLUS, R, SPSS, SAS, Systat, etc., we have
attempted to engineer a new statistics education
environment, the Statistics Online Computational
Resource (SOCR). This resource performs many of the
standard types of statistical analysis, much like other
classical tools. In addition, it is designed in a
plug-in object-oriented architecture and is completely
platform independent, web-based, interactive,
extensible and secure. Over the past 4 years we have
tested, fine-tuned and reanalyzed the SOCR framework in
many of our undergraduate and graduate probability and
statistics courses and have evidence that SOCR
resources build student's intuition and enhance their
learning.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2005-07-01; Accepted 2006-10-01",
}
@Book{Everitt:2006:HSA,
author = "Brian Everitt and Torsten Hothorn",
title = "A handbook of statistical analyses using {R}",
publisher = pub-CHAPMAN-HALL-CRC,
address = pub-CHAPMAN-HALL-CRC:adr,
pages = "xvi + 275",
year = "2006",
ISBN = "1-58488-539-4",
ISBN-13 = "978-1-58488-539-9",
LCCN = "QA276.45.R3 E94 2006",
bibdate = "Sat Jun 13 09:37:41 MDT 2009",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
URL = "http://www.loc.gov/catdir/enhancements/fy0648/2005056944-d.html;
http://www.loc.gov/catdir/toc/fy0608/2005056944.html",
acknowledgement = ack-nhfb,
subject = "mathematical statistics; data processing; handbooks,
manuals, etc; R (computer programming language)",
}
@Article{Gunter:2006:BRB,
author = "Berton H. Gunter",
title = "Book Review: {{\booktitle{R Graphics}} by Paul
Murrell}",
journal = j-TECHNOMETRICS,
volume = "48",
number = "2",
pages = "308--309",
month = may,
year = "2006",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/25471176",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:21:10 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i25471152;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics2000.bib",
URL = "http://www.jstor.org/stable/25471176",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Article{Hankin:2006:CSA,
author = "Robin K. S. Hankin",
title = "Code Snippet: Additive Integer Partitions in {R}",
journal = j-J-STAT-SOFT,
volume = "16",
number = "CS-1",
pages = "1--3",
month = may,
year = "2006",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v16/c01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-04-27; Accepted 2006-05-17",
}
@Article{Hankin:2006:IER,
author = "Robin K. S. Hankin",
title = "Introducing {\tt elliptic}, an {R} Package for
Elliptic and Modular Functions",
journal = j-J-STAT-SOFT,
volume = "15",
number = "7",
pages = "1--22",
month = jan,
year = "2006",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v15/i07",
abstract = "This paper introduces the {\tt elliptic} package of R
routines, for numerical calculation of elliptic and
related functions. Elliptic functions furnish
interesting and instructive examples of many ideas of
complex analysis, and the package illustrates these
numerically and visually. A statistical application in
fluid mechanics is presented.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2005-07-13; Accepted 2006-01-18",
}
@Article{Hardin:2006:IST,
author = "Jo Hardin",
title = "Introduction to Statistics Through Resampling Methods
and {R\slash S-PLUS}",
journal = j-AMER-STAT,
volume = "60",
number = "4",
pages = "343--344",
month = nov,
year = "2006",
CODEN = "ASTAAJ",
DOI = "http://pubs.amstat.org/doi/pdfplus/10.1198/tas.2006.s61",
ISSN = "0003-1305 (print), 1537-2731 (electronic)",
ISSN-L = "0003-1305",
bibdate = "Thu Aug 26 21:48:27 MDT 2010",
bibsource = "http://www.amstat.org/publications/tas/;
http://www.math.utah.edu/pub/tex/bib/amstat2000.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
fjournal = "The American Statistician",
journal-URL = "http://www.tandfonline.com/loi/utas20",
}
@Article{Hilbe:2006:BRB,
author = "Joseph Hilbe",
title = "Book Review: {{\booktitle{A Handbook of Statistical
Analyses Using R}}}",
journal = j-J-STAT-SOFT,
volume = "16",
number = "BR-6",
pages = "1--6",
month = aug,
year = "2006",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v16/b06",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-08-12; Accepted 2006-08-12",
}
@Book{Jureckova:2006:RSM,
author = "Jana Jure{\v{c}}kov{\'a} and Jan Picek",
title = "Robust statistical methods with {R}",
publisher = pub-CHAPMAN-HALL-CRC,
address = pub-CHAPMAN-HALL-CRC:adr,
pages = "xi + 193",
year = "2006",
ISBN = "1-58488-454-1",
ISBN-13 = "978-1-58488-454-5",
LCCN = "QA276 .J868 2006",
bibdate = "Thu Jul 10 08:17:35 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
URL = "http://www.loc.gov/catdir/enhancements/fy0646/2005053192-d.html",
acknowledgement = ack-nhfb,
author-dates = "1940--",
subject = "Robust statistics; R (Computer program language);
Statistical methods",
}
@Article{Karatzoglou:2006:SVM,
author = "Alexandros Karatzoglou and David Meyer and Kurt
Hornik",
title = "Support Vector Machines in {R}",
journal = j-J-STAT-SOFT,
volume = "15",
number = "9",
pages = "1--28",
month = apr,
year = "2006",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v15/i09",
abstract = "Being among the most popular and efficient
classification and regression methods currently
available, implementations of support vector machines
exist in almost every popular programming language.
Currently four R packages contain SVM related software.
The purpose of this paper is to present and compare
these implementations.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2005-10-24; Accepted 2006-04-06",
}
@Article{Kim:2006:CRP,
author = "Donghoh Kim and Hee-Seok Oh",
title = "{CVTresh}: {R} Package for Level-Dependent
Cross-Validation Thresholding",
journal = j-J-STAT-SOFT,
volume = "15",
number = "10",
pages = "1--13",
month = apr,
year = "2006",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v15/i10",
abstract = "The core of the wavelet approach to nonparametric
regression is thresholding of wavelet coefficients.
This paper reviews a cross-validation method for the
selection of the thresholding value in wavelet
shrinkage of Oh, Kim, and Lee (2006), and introduces
the R package CVThresh implementing details of the
calculations for the procedures.\par
This procedure is implemented by coupling a
conventional cross-validation with a fast imputation
method, so that it overcomes a limitation of data
length, a power of 2. It can be easily applied to the
classical leave-one-out cross-validation and K-fold
cross-validation. Since the procedure is
computationally fast, a level-dependent
cross-validation can be developed for wavelet shrinkage
of data with various sparseness according to levels.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2005-08-22; Accepted 2006-04-08",
}
@Article{Lund:2006:BRB,
author = "Ulric J. Lund",
title = "Book Review: {{\booktitle{An R and S-Plus{\reg}
Companion to Multivariate Analysis}}, by Brian S.
Everitt}",
journal = j-J-AM-STAT-ASSOC,
volume = "101",
number = "474",
pages = "857--858",
month = jun,
year = "2006",
CODEN = "JSTNAL",
DOI = "http://dx.doi.org/10.1198/jasa.2006.s114",
ISSN = "0162-1459 (print), 1537-274X (electronic)",
ISSN-L = "0162-1459",
bibdate = "Wed Jan 25 08:06:33 MST 2012",
bibsource = "http://www.amstat.org/publications/jasa/;
http://www.jstor.org/journals/01621459.html;
http://www.jstor.org/stable/i27590703;
http://www.math.utah.edu/pub/tex/bib/jamstatassoc2000.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstor.org/stable/27590760",
acknowledgement = ack-nhfb,
fjournal = "Journal of the American Statistical Association",
journal-URL = "http://www.tandfonline.com/loi/uasa20",
}
@Article{Maindonald:2006:BRB,
author = "John Maindonald",
title = "Book Review: {{\booktitle{Generalized Additive Models:
An Introduction with R}}}",
journal = j-J-STAT-SOFT,
volume = "16",
number = "BR-3",
pages = "1--2",
month = jul,
year = "2006",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v16/b03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-07-12; Accepted 2006-07-12",
}
@Article{Marchetti:2006:IIG,
author = "Giovanni M. Marchetti",
title = "Independencies Induced from a Graphical {Markov} Model
After Marginalization and Conditioning: The {R} Package
{\tt ggm}",
journal = j-J-STAT-SOFT,
volume = "15",
number = "6",
pages = "1--15",
month = feb,
year = "2006",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v15/i06",
abstract = "We describe some functions in the R package {\tt ggm}
to derive from a given Markov model, represented by a
directed acyclic graph, different types of graphs
induced after marginalizing over and conditioning on
some of the variables. The package has a few basic
functions that find the essential graph, the induced
concentration and covariance graphs, and several types
of chain graphs implied by the directed acyclic graph
(DAG) after grouping and reordering the variables.
These functions can be useful to explore the impact of
latent variables or of selection effects on a chosen
data generating model.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2005-06-21; Accepted 2006-02-08",
}
@Article{Mineo:2006:URP,
author = "Angelo Mineo and Alfredo Pontillo",
title = "Using {R} via {PHP} for Teaching Purposes: {R-php}",
journal = j-J-STAT-SOFT,
volume = "17",
number = "4",
pages = "1--20",
month = oct,
year = "2006",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v17/i04",
abstract = "This paper deals with the R-php statistical software,
that is an environment for statistical analysis, freely
accessible and attainable through the World Wide Web,
based on R. Indeed, this software uses, as ``engine''
for statistical analyses, R via PHP and its design has
been inspired by a paper of de Leeuw (1997). R-php is
based on two modules: a base module and a
point-and-click module. R-php base allows the simple
editing of R code in a form. R-php point-and-click
allows some statistical analyses by means of a
graphical user interface (GUI): then, to use this
module it is not necessary for the user to know the R
environment, but all the allowed analyses can be
performed by using the computer mouse. We think that
this tool could be particularly useful for teaching
purposes: one possible use could be in a University
computer laboratory to permit a smooth approach of
students to R.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2004-09-04; Accepted 2006-10-20",
}
@Book{Murrell:2006:RG,
author = "Paul Murrell",
title = "{R} Graphics",
publisher = pub-CHAPMAN-HALL-CRC,
address = pub-CHAPMAN-HALL-CRC:adr,
pages = "xix + 301",
year = "2006",
ISBN = "1-4200-3502-9 (electronic), 0-8493-1622-7,
1-58488-486-X",
ISBN-13 = "978-1-4200-3502-5 (electronic), 978-0-8493-1622-7,
978-1-58488-486-6",
LCCN = "T385 .M9 2006",
bibdate = "Sat Jun 13 09:30:24 MDT 2009",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
library.mit.edu:9909/mit01",
series = "Computer science and data analysis series",
URL = "http://www.netLibrary.com/urlapi.asp?action=summary&v=1&bookid=155642",
acknowledgement = ack-nhfb,
subject = "Computer graphics; R (Computer programming language)",
}
@Article{Nadarajah:2006:CSR,
author = "Saralees Nadarajah and Samuel Kotz",
title = "Code Snippet: {R} Programs for Truncated
Distributions",
journal = j-J-STAT-SOFT,
volume = "16",
number = "CS-2",
pages = "1--8",
month = aug,
year = "2006",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v16/c02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-06-06; Accepted 2006-08-17",
}
@Article{Ng:2006:BRB,
author = "H. K. Tony Ng",
title = "Book Review: {{\booktitle{Statistics: An Introduction
Using R}} by Michael J. Crawley}",
journal = j-TECHNOMETRICS,
volume = "48",
number = "2",
pages = "308--308",
month = may,
year = "2006",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/25471175",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:21:10 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i25471152;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics2000.bib",
URL = "http://www.jstor.org/stable/25471175",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Book{Paradis:2006:APE,
author = "Emmanuel Paradis",
title = "Analysis of phylogenetics and evolution with {R}",
publisher = pub-SV,
address = pub-SV:adr,
pages = "xii + 211",
year = "2006",
ISBN = "0-387-32914-5 (paperback), 1-4614-1743-0 (e-book)",
ISBN-13 = "978-0-387-32914-7 (paperback), 978-1-4614-1743-9
(e-book)",
LCCN = "QH83 .P37 2006",
bibdate = "Thu Jul 10 12:14:05 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Use R!",
URL = "http://www.loc.gov/catdir/enhancements/fy0824/2006923823-d.html;
http://www.loc.gov/catdir/toc/fy0703/2006923823.html",
abstract = "The increasing availability of molecular and genetic
databases coupled with the growing power of computers
gives biologists opportunities to address new issues,
such as the patterns of molecular evolution, and
re-assess old ones, such as the role of adaptation in
species diversification. In the second edition, the
book continues to integrate a wide variety of data
analysis methods into a single and flexible interface:
the R language. This open source language is available
for a wide range of computer systems and has been
adopted as a computational environment by many authors
of statistical software. Adopting R as a main tool for
phylogenetic analyses will ease the workflow in
biologists' data analyses, ensure greater scientific
repeatability, and enhance the exchange of ideas and
methodological developments. The second edition is
completed updated, covering the full gamut of R
packages for this area that have been introduced to the
market since its previous publication five years ago.
There is also a new chapter on the simulation of
evolutionary data. Graduate students and researchers in
evolutionary biology can use this book as a reference
for data analyses, whereas researchers in
bioinformatics interested in evolutionary analyses will
learn how to implement these methods in R. The book
starts with a presentation of different R packages and
gives a short introduction to R for phylogeneticists
unfamiliar with this language. The basic phylogenetic
topics are covered: manipulation of phylogenetic data,
phylogeny estimation, tree drawing, phylogenetic
comparative methods, and estimation of ancestral
characters. The chapter on tree drawing uses R's
powerful graphical environment. A section deals with
the analysis of diversification with phylogenies, one
of the author's favorite research topics. The last
chapter is devoted to the development of phylogenetic
methods with R and interfaces with other languages (C
and C++). Some exercises conclude these chapters.",
acknowledgement = ack-nhfb,
subject = "Cladistic analysis; Phylogeny; Methodology; R
(Computer program language)",
tableofcontents = "Introduction \\
First Steps in R for Phylogeneticists \\
Phylogenetic Data in R \\
Plotting Phylogenies \\
Phylogeny Estimation \\
Analysis of Macroevolution with Phylogenies \\
Simulating Phylogenies and Evolutionary Data \\
Developing and Implementing Phylogenetic Methods in R
\\
Short Course on Regular Expressions",
}
@Book{Pardoe:2006:ARM,
author = "Iain Pardoe",
title = "Applied regression modeling: a business approach",
publisher = pub-WILEY-INTERSCIENCE,
address = pub-WILEY-INTERSCIENCE:adr,
pages = "xx + 303",
year = "2006",
ISBN = "0-471-97033-6",
ISBN-13 = "978-0-471-97033-0",
LCCN = "QA278.2 .P363 2006",
bibdate = "Wed Sep 15 09:43:21 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
URL = "http://www.loc.gov/catdir/enhancements/fy0741/2006044262-b.html;
http://www.loc.gov/catdir/enhancements/fy0741/2006044262-d.html;
http://www.loc.gov/catdir/toc/fy0702/2006044262.html;
http://www.wiley.com/WileyCDA/WileyTitle/productCd-0471970336.html",
acknowledgement = ack-nhfb,
keywords = "Minitab; R/S-Plus; SAS; SPSS",
subject = "regression analysis; statistics",
}
@Book{Pfaff:2006:AIC,
author = "Bernhard Pfaff",
title = "Analysis of integrated and cointegrated time series
with {R}",
publisher = pub-SV,
address = pub-SV:adr,
pages = "xi + 139",
year = "2006",
ISBN = "0-387-27959-8, 0-387-27960-1 (e-book)",
ISBN-13 = "978-0-387-27959-6, 978-0-387-27960-2 (e-book)",
LCCN = "QA280 .P45 2006",
bibdate = "Thu Jul 10 08:36:02 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Use R!",
URL = "http://www.loc.gov/catdir/enhancements/fy0663/2005935027-d.html;
http://www.loc.gov/catdir/toc/fy0610/2005935027.html",
acknowledgement = ack-nhfb,
subject = "Time-series analysis; Computer programs; R (Computer
program language)",
}
@Article{Rizopoulos:2006:LRP,
author = "Dimitris Rizopoulos",
title = "{\tt ltm}: An {R} Package for Latent Variable Modeling
and Item Response Analysis",
journal = j-J-STAT-SOFT,
volume = "17",
number = "5",
pages = "1--25",
month = nov,
year = "2006",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v17/i05",
abstract = "The R package {\tt ltm} has been developed for the
analysis of multivariate dichotomous and polytomous
data using latent variable models, under the Item
Response Theory approach. For dichotomous data the
Rasch, the Two-Parameter Logistic, and Birnbaum's
Three-Parameter models have been implemented, whereas
for polytomous data Semejima's Graded Response model is
available. Parameter estimates are obtained under
marginal maximum likelihood using the Gauss-Hermite
quadrature rule. The capabilities and features of the
package are illustrated using two real data examples.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-05-08; Accepted 2006-11-20",
}
@TechReport{Sartori:2006:SRL,
author = "Nicola Sartori",
title = "{Sweave $=$ R $ \cdot $ {\LaTeX}$^2$}",
type = "Technical report",
institution = "Universit{\`a} ``Ca' Foscari'' Venezia",
address = "Venice, Italy",
pages = "17",
day = "23",
month = nov,
year = "2006",
bibdate = "Sat Jul 5 19:11:39 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/litprog.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://stat.epfl.ch/webdav/site/stat/shared/Regression/EPFL-Sweave-powerdot.pdf",
acknowledgement = ack-nhfb,
}
@Article{Shin:2006:CSL,
author = "Ji-Hyung Shin and Sigal Blay and Brad McNeney and
Jinko Graham",
title = "Code Snippet: {LDheatmap}: An {R} Function for
Graphical Display of Pairwise Linkage Disequilibria
Between Single Nucleotide Polymorphisms",
journal = j-J-STAT-SOFT,
volume = "16",
number = "CS-3",
pages = "1--9",
month = sep,
year = "2006",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v16/c03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-05-15; Accepted 2006-09-20",
}
@Book{Shumway:2006:TSA,
author = "Robert H. Shumway and David S. Stoffer",
title = "Time series analysis and its applications: with {R}
examples",
publisher = pub-SV,
address = pub-SV:adr,
edition = "Second",
pages = "xiii + 575",
year = "2006",
ISBN = "0-387-29317-5 (hardcover)",
ISBN-13 = "978-0-387-29317-2 (hardcover)",
LCCN = "QA280 .S585 2006",
bibdate = "Sat Jun 13 09:46:46 MDT 2009",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Springer texts in statistics",
URL = "http://www.loc.gov/catdir/enhancements/fy0663/2005935284-d.html;
http://www.loc.gov/catdir/toc/fy0704/2005935284.html",
acknowledgement = ack-nhfb,
subject = "Time-series analysis",
tableofcontents = "1. Characteristics of time series \\
2. Time series regression and exploratory data analysis
\\
3. ARIMA models \\
4. Spectral analysis and filtering \\
5. Additional time domain topics \\
6. State-space models \\
7. Statistical methods in the frequency domain \\
App. A. Large sample theory \\
App. B. Time domain theory \\
App. C. Spectral domain theory",
}
@Article{Smith:2006:BRB,
author = "Eric P. Smith",
title = "Book Review: {{\booktitle{Using R for Introductory
Statistics}} by John Verzani}",
journal = j-TECHNOMETRICS,
volume = "48",
number = "2",
pages = "307--308",
month = may,
year = "2006",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/25471174",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:21:10 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i25471152;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics2000.bib",
URL = "http://www.jstor.org/stable/25471174",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Article{Tanimura:2006:PSM,
author = "Susumu Tanimura and Chusi Kuroiwa and Tsutomu Mizota",
title = "Proportional Symbol Mapping in {R}",
journal = j-J-STAT-SOFT,
volume = "15",
number = "5",
pages = "1--7",
month = jan,
year = "2006",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v15/i05",
abstract = "Visualization of spatial data on a map aids not only
in data exploration but also in communication to impart
spatial conception or ideas to others. Although recent
cartographic functions in R are rapidly becoming
richer, proportional symbol mapping, which is one of
the common mapping approaches, has not been packaged
thus far. Based on the theories of proportional symbol
mapping developed in cartography, the authors developed
some functions for proportional symbol mapping using R,
including mathematical and perceptual scaling. An
example of these functions demonstrated the new
expressive power and options available in R,
particularly for the visualization of conceptual point
data.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2005-10-02; Accepted 2006-01-24",
}
@Book{Wood:2006:GAM,
author = "Simon N. Wood",
title = "Generalized additive models: an introduction with
{R}",
publisher = pub-CHAPMAN-HALL-CRC,
address = pub-CHAPMAN-HALL-CRC:adr,
pages = "xvii + 391",
year = "2006",
ISBN = "1-58488-474-6",
ISBN-13 = "978-1-58488-474-3",
LCCN = "QA274.73 .W66 2006",
bibdate = "Thu Jul 10 08:21:40 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Texts in statistical science",
URL = "http://www.loc.gov/catdir/enhancements/fy0702/2006040209-d.html",
acknowledgement = ack-nhfb,
subject = "Random walks (Mathematics); Linear models
(Statistics); R (Computer program language);
Mathematical models",
tableofcontents = "Linear models \\
Generalized linear models \\
Introducing GAM's \\
Some GAM theory \\
GAMs in practice: mgcv \\
Mixed models and GAMMs",
}
@Article{Anderson-Cook:2007:BRBb,
author = "Christine M. Anderson-Cook",
title = "Book review: {{\booktitle{Generalized Additive Models:
An Introduction With R}}}",
journal = j-J-AM-STAT-ASSOC,
volume = "102",
number = "478",
pages = "760--761",
month = jun,
year = "2007",
CODEN = "JSTNAL",
DOI = "http://dx.doi.org/10.1198/jasa.2007.s188",
ISSN = "0162-1459 (print), 1537-274X (electronic)",
ISSN-L = "0162-1459",
bibdate = "Thu Aug 26 11:26:31 MDT 2010",
bibsource = "http://www.amstat.org/publications/jasa/;
http://www.math.utah.edu/pub/tex/bib/jamstatassoc2000.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
fjournal = "Journal of the American Statistical Association",
journal-URL = "http://www.tandfonline.com/loi/uasa20",
}
@Article{Atman:2007:ATA,
author = "Micah Atman and Jeff Gill and Michael P. McDonald",
title = "{\tt accuracy}: Tools for Accurate and Reliable
Statistical Computing",
journal = j-J-STAT-SOFT,
volume = "21",
number = "1",
pages = "1--30",
month = jul,
year = "2007",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v21/i01",
abstract = "Most empirical social scientists are surprised that
low-level numerical issues in software can have
deleterious effects on the estimation process.
Statistical analyses that appear to be perfectly
successful can be invalidated by concealed numerical
problems. We have developed a set of tools, contained
in {\tt accuracy}, a package for R and S-PLUS, to
diagnose problems stemming from numerical and
measurement error and to improve the accuracy of
inferences. The tools included in {\tt accuracy}
include a framework for gauging the computational
stability of model results, tools for comparing model
results, optimization diagnostics, and tools for
collecting entropy for true random numbers
generation.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-02-28; Accepted 2007-06-25",
}
@Article{Baillargeon:2007:RLM,
author = "Sophie Baillargeon and Louis-Paul Rivest",
title = "{{\tt Rcapture}}: Loglinear Models for
Capture-Recapture in {R}",
journal = j-J-STAT-SOFT,
volume = "19",
number = "5",
pages = "1--31",
month = apr,
year = "2007",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v19/i05",
abstract = "This article introduces {\tt Rcapture}, an R package
for capture-recapture experiments. The data for
analysis consists of the frequencies of the observable
capture histories over the t capture occasions of the
experiment. A capture history is a vector of zeros and
ones where one stands for a capture and zero for a
miss. {\tt Rcapture} can fit three types of models.
With a closed population model, the goal of the
analysis is to estimate the size N of the population
which is assumed to be constant throughout the
experiment. The estimator depends on the way in which
the capture probabilities of the animals vary. {\tt
Rcapture} features several models for these capture
probabilities that lead to different estimators for N.
In an open population model, immigration and death
occur between sampling periods. The estimation of
survival rates is of primary interest. {\tt Rcapture}
can fit the basic Cormack-Jolly-Seber and Jolly-Seber
model to such data. The third type of models fitted by
{\tt Rcapture} are robust design models. It features
two levels of sampling; closed population models apply
within primary periods and an open population model
applies between periods. Most models in {\tt Rcapture}
have a loglinear form; they are fitted by carrying out
a Poisson regression with the R function {\tt glm}.
Estimates of the demographic parameters of interest are
derived from the loglinear parameter estimates; their
variances are obtained by linearization. The novel
feature of this package is the provision of several new
options for modeling capture probabilities
heterogeneity between animals in both closed population
models and the primary periods of a robust design. It
also implements many of the techniques developed by R.
M. Cormack for open population models.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-07-12; Accepted 2007-04-03",
}
@Book{Bartoszynski:2007:PSI,
author = "Robert Bartoszy{\'n}ski and Magdalena
Niewiadomska-Bugaj",
title = "Probability and statistical inference",
publisher = pub-WILEY-INTERSCIENCE,
address = pub-WILEY-INTERSCIENCE:adr,
edition = "Second",
pages = "xii + 647",
year = "2007",
ISBN = "0-470-19158-9 (e-book)",
ISBN-13 = "978-0-470-19158-3 (e-book)",
LCCN = "QA273 .B2584 2007",
bibdate = "Wed Sep 15 09:42:15 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
URL = "http://www.wiley.com/WileyCDA/WileyTitle/productCd-0470191589.html",
acknowledgement = ack-nhfb,
remark = "Previous edition \cite{Bartoszynski:1996:PSI}.",
subject = "probabilities; mathematical statistics",
tableofcontents = "Preface \\
1. Experiments, Sample Spaces, and Events \\
2. Probability \\
3. Counting \\
4. Conditional Probability; Independence \\
5. Markov Chains \\
6. Random Variables: Univariate Case \\
7. Random Variables: Multivariate Case \\
8. Expectation \\
9. Selected Families of Distributions \\
10. Random Samples \\
11. Introduction to Statistical Inference \\
12. Estimation \\
13. Testing Statistical Hypotheses \\
14. Linear Models \\
15. Rank Methods \\
16. Analysis of Categorical Data \\
Statistical Tables \\
Bibliography \\
Answers to Odd-Numbered Problems \\
Index",
}
@Article{Bowman:2007:RSI,
author = "Adrian Bowman and Ewan Crawford and Gavin Alexander
and Richard W. Bowman",
title = "{\tt rpanel}: Simple Interactive Controls for {R}
Functions Using the {\tt tcltk} Package",
journal = j-J-STAT-SOFT,
volume = "17",
number = "9",
pages = "1--18",
month = jan,
year = "2007",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v17/i09",
abstract = "In a variety of settings it is extremely helpful to be
able to apply R functions through buttons, sliders and
other types of graphical control. This is particularly
true in plotting activities where immediate
communication between such controls and a graphical
display allows the user to interact with a plot in a
very effective manner. The {\tt tcltk} package provides
extensive tools for this and the aim of the {\tt
rpanel} package is to provide simple and well
documented functions which make these facilities as
accessible as possible. In addition, the operations
which form the basis of communication within {\tt
tcltk} are managed in a way which allows users to write
functions with a more standard form of parameter
passing. This paper describes the basic design of the
software and illustrates it on a variety of examples of
interactive control of graphics. The {\tt tkrplot}
system is used to allow plots to be integrated with
controls into a single panel. An example of the use of
a graphical image, and the ability to interact with
this, is also discussed.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-08-29; Accepted 2007-01-01",
}
@Book{Braun:2007:FCS,
author = "John Braun and Duncan James Murdoch",
title = "A first course in statistical programming with {R}",
publisher = pub-CAMBRIDGE,
address = pub-CAMBRIDGE:adr,
pages = "x + 163",
year = "2007",
ISBN = "0-521-87265-0 (hardcover), 0-521-69424-8 (paperback)",
ISBN-13 = "978-0-521-87265-2 (hardcover), 978-0-521-69424-7
(paperback)",
LCCN = "QA276.45.R3 B73 2007",
bibdate = "Thu Jul 10 08:40:36 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
URL = "http://www.loc.gov/catdir/enhancements/fy0827/2008295814-b.html;
http://www.loc.gov/catdir/enhancements/fy0827/2008295814-d.html;
http://www.loc.gov/catdir/enhancements/fy0827/2008295814-t.html",
acknowledgement = ack-nhfb,
author-dates = "1963--",
subject = "R (Computer program language); Statistics; Data
processing",
tableofcontents = "1. Getting started \\
2. Introduction to the R language \\
3. Programming statistical graphics \\
4. Programming with R \\
5. Simulation \\
6. Computational linear algebra \\
7. Numerical optimization \\
Appendix. Review of random variables and distributions
\\
Index",
}
@Article{Burr:2007:BRB,
author = "Thomas L. Burr",
title = "Book Review: {{\booktitle{Modeling Financial Time
Series with S-Plus}} by Eric Zivot; Jiahui Wang}",
journal = j-TECHNOMETRICS,
volume = "49",
number = "1",
pages = "105--106",
month = feb,
year = "2007",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/25471290",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:21:15 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i25471268;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics2000.bib",
URL = "http://www.jstor.org/stable/25471290",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Article{Chiang:2007:BRB,
author = "Alan Y. Chiang",
title = "Book Review: {{\booktitle{Generalized Additive Models:
An Introduction with R}} by Simon N. Wood}",
journal = j-TECHNOMETRICS,
volume = "49",
number = "3",
pages = "360--361",
month = aug,
year = "2007",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/25471358",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:21:17 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i25471341;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics2000.bib",
URL = "http://www.jstor.org/stable/25471358",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Book{Cook:2007:IDG,
author = "Dianne Cook and Deborah F. Swayne",
title = "Interactive and Dynamic Graphics for Data Analysis:
with {R} and {GGobi}",
publisher = pub-SV,
address = pub-SV:adr,
pages = "vii + 188",
year = "2007",
ISBN = "0-387-71761-7",
ISBN-13 = "978-0-387-71761-6",
LCCN = "QA276.3 .C66 2007",
bibdate = "Sat Jun 13 09:46:41 MDT 2009",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Use R!",
URL = "http://www.loc.gov/catdir/enhancements/fy0825/2007925720-d.html;
http://www.loc.gov/catdir/enhancements/fy0825/2007925720-t.html",
acknowledgement = ack-nhfb,
remark = "Possible additional authors (absent from cover):
Andreas Buja and D. Temple Lang and H. Hofmann and H.
Wickham and M. Lawrence",
subject = "graphic methods; computer graphics; statistics;
visualization; congresses; R (Computer program
language)",
tableofcontents = "1. Introduction \\
2. The Toolbox \\
3. Missing Values \\
4. Supervised Classification \\
5. Cluster Analysis \\
6. Miscellaneous Topics \\
7. Datasets",
}
@Book{Crawley:2007:RB,
author = "Michael J. Crawley",
title = "The {R} book",
publisher = pub-WILEY,
address = pub-WILEY:adr,
pages = "viii + 942",
year = "2007",
ISBN = "0-470-51024-2, 0-470-51506-6 (e-book)",
ISBN-13 = "978-0-470-51024-7, 978-0-470-51506-8 (e-book)",
LCCN = "QA276.45.R3 C73 2007",
bibdate = "Sat Jun 13 08:44:02 MDT 2009",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
URL = "http://www.loc.gov/catdir/enhancements/fy0741/2007296951-b.html;
http://www.loc.gov/catdir/enhancements/fy0741/2007296951-d.html;
http://www.loc.gov/catdir/toc/fy0713/2007296951.html;
http://www.wiley.com/WileyCDA/WileyTitle/productCd-0470515066.html",
acknowledgement = ack-nhfb,
subject = "R (computer programming language); mathematical
statistics; data processing",
}
@Article{Davis:2007:BRBa,
author = "J. Wade Davis",
title = "Book review: {{\booktitle{Bioinformatics and
Computational Biology Solutions Using R and
Bioconductor}}}",
journal = j-J-AM-STAT-ASSOC,
volume = "102",
number = "477",
pages = "388--389",
month = mar,
year = "2007",
CODEN = "JSTNAL",
DOI = "http://dx.doi.org/10.1198/jasa.2007.s179",
ISSN = "0162-1459 (print), 1537-274X (electronic)",
ISSN-L = "0162-1459",
bibdate = "Thu Aug 26 11:26:31 MDT 2010",
bibsource = "http://www.amstat.org/publications/jasa/;
http://www.math.utah.edu/pub/tex/bib/jamstatassoc2000.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
fjournal = "Journal of the American Statistical Association",
journal-URL = "http://www.tandfonline.com/loi/uasa20",
}
@Article{Duong:2007:KKD,
author = "Tarn Duong",
title = "{\tt ks}: Kernel Density Estimation and Kernel
Discriminant Analysis for Multivariate Data in {R}",
journal = j-J-STAT-SOFT,
volume = "21",
number = "7",
pages = "1--16",
month = oct,
year = "2007",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v21/i07",
abstract = "Kernel smoothing is one of the most widely used
non-parametric data smoothing techniques. We introduce
a new R package {\tt ks} for multivariate kernel
smoothing. Currently it contains functionality for
kernel density estimation and kernel discriminant
analysis. It is a comprehensive package for bandwidth
matrix selection, implementing a wide range of
data-driven diagonal and unconstrained bandwidth
selectors.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-03-04; Accepted 2007-09-12",
}
@Article{Erdman:2007:BRP,
author = "Chandra Erdman and John W. Emerson",
title = "{\tt bcp}: An {R} Package for Performing a {Bayesian}
Analysis of Change Point Problems",
journal = j-J-STAT-SOFT,
volume = "23",
number = "3",
pages = "1--13",
month = dec,
year = "2007",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v23/i03",
abstract = "Barry and Hartigan (1993) propose a Bayesian analysis
for change point problems. We provide a brief summary
of selected work on change point problems, both
preceding and following Barry and Hartigan. We outline
Barry and Hartigan's approach and offer a new R
package, {\tt pkgbcp} (Erdman and Emerson 2007),
implementing their analysis. We discuss two frequentist
alternatives to the Bayesian analysis, the recursive
circular binary segmentation algorithm (Olshen and
Venkatraman 2004) and the dynamic programming algorithm
of (Bai and Perron 2003). We illustrate the application
of {\tt bcp} with economic and microarray data from the
literature.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-01-02; Accepted 2007-11-27",
}
@Article{Finley:2007:SRP,
author = "Andrew O. Finley and Sudipto Banerjee and Bradley P.
Carlin",
title = "{{\tt spBayes}}: An {R} Package for Univariate and
Multivariate Hierarchical Point-referenced Spatial
Models",
journal = j-J-STAT-SOFT,
volume = "19",
number = "4",
pages = "1--24",
month = apr,
year = "2007",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v19/i04",
abstract = "Scientists and investigators in such diverse fields as
geological and environmental sciences, ecology,
forestry, disease mapping, and economics often
encounter spatially referenced data collected over a
fixed set of locations with coordinates
(latitude-longitude, Easting-Northing etc.) in a region
of study. Such point-referenced or geostatistical data
are often best analyzed with Bayesian hierarchical
models. Unfortunately, fitting such models involves
computationally intensive Markov chain Monte Carlo
(MCMC) methods whose efficiency depends upon the
specific problem at hand. This requires extensive
coding on the part of the user and the situation is not
helped by the lack of available software for such
algorithms. Here, we introduce a statistical software
package, {\tt spBayes}, built upon the R statistical
computing platform that implements a generalized
template encompassing a wide variety of Gaussian
spatial process models for univariate as well as
multivariate point-referenced data. We discuss the
algorithms behind our package and illustrate its use
with a synthetic and real data example.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-10-29; Accepted 2007-04-24",
}
@Article{Fotopoulos:2007:BRBb,
author = "Stergios B. Fotopoulos",
title = "Book Review: {{\booktitle{Modeling Financial Time
Series with S-PLUS}} by Eric Zivot; Jiahui Wang}",
journal = j-TECHNOMETRICS,
volume = "49",
number = "3",
pages = "360--360",
month = aug,
year = "2007",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/25471357",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:21:17 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i25471341;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics2000.bib",
URL = "http://www.jstor.org/stable/25471357",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Article{Gramacy:2007:TRP,
author = "Robert B. Gramacy",
title = "{\tt tgp}: An {R} Package for {Bayesian}
Nonstationary, Semiparametric Nonlinear Regression and
Design by Treed {Gaussian} Process Models",
journal = j-J-STAT-SOFT,
volume = "19",
number = "9",
pages = "1--46",
month = jun,
year = "2007",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v19/i09",
abstract = "The {\tt tgp} package for R is a tool for fully
Bayesian nonstationary, semiparametric nonlinear
regression and design by treed Gaussian processes with
jumps to the limiting linear model. Special cases also
implemented include Bayesian linear models, linear
CART, stationary separable and isotropic Gaussian
processes. In addition to inference and posterior
prediction, the package supports the (sequential)
design of experiments under these models paired with
several objective criteria. 1-d and 2-d plotting, with
higher dimension projection and slice capabilities, and
tree drawing functions (requiring maptree and combinat
packages), are also provided for visualization of {\tt
tgp} objects.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-07-12; Accepted 2007-06-13",
}
@Article{Guha:2007:CIF,
author = "Rajarshi Guha",
title = "Chemical Informatics Functionality in {R}",
journal = j-J-STAT-SOFT,
volume = "18",
number = "5",
pages = "1--16",
month = jan,
year = "2007",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v18/i05",
abstract = "The flexibility and scope of the R programming
environment has made it a popular choice for
statistical modeling and scientific prototyping in a
number of fields. In the field of chemistry, R provides
several tools for a variety of problems related to
statistical modeling of chemical information. However,
one aspect common to these tools is that they do not
have direct access to the information that is available
from chemical structures, such as contained in
molecular descriptors.\par
We describe the rcdk package that provides the R user
with access to the CDK, a Java framework for
cheminformatics. As a result, it is possible to read in
a variety of molecular formats, calculate molecular
descriptors and evaluate fingerprints. In addition, we
describe the rpubchem that will allow access to the
data in PubChem, a public repository of molecular
structures and associated assay data for approximately
8 million compounds. Currently, the package allows
access to structural information as well as some simple
molecular properties from PubChem. In addition the
package allows access to bio-assay data from the
PubChem FTP servers.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-09-25; Accepted 2007-01-01",
}
@Article{Hankin:2007:CSS,
author = "Robin K. S. Hankin and Luke J. West",
title = "Code Snippet: Set Partitions in {R}",
journal = j-J-STAT-SOFT,
volume = "23",
number = "CS-2",
pages = "1--12",
month = dec,
year = "2007",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v23/c02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-08-29; Accepted 2007-12-11",
}
@Article{Hankin:2007:CSU,
author = "Robin K. S. Hankin",
title = "Code Snippet: Urn Sampling Without Replacement:
Enumerative Combinatorics in {R}",
journal = j-J-STAT-SOFT,
volume = "17",
number = "CS-1",
pages = "1--6",
month = jan,
year = "2007",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v17/c01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-08-22; Accepted 2007-01-03",
}
@Article{Hankin:2007:IUR,
author = "Robin K. S. Hankin",
title = "Introducing {\tt untb}, an {R} Package For Simulating
Ecological Drift Under the Unified Neutral Theory of
Biodiversity",
journal = j-J-STAT-SOFT,
volume = "22",
number = "12",
pages = "1--15",
month = sep,
year = "2007",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v22/i12",
abstract = "The distribution of abundance amongst species with
similar ways of life is a classical problem in ecology.
The unified neutral theory of biodiversity, due to
Hubbell, states that observed population dynamics may
be explained on the assumption of per capita
equivalence amongst individuals. One can thus dispense
with differences between species, and differences
between abundant and rare species: all individuals
behave alike in respect of their probabilities of
reproducing and death. It is a striking fact that such
a parsimonious theory results in a non-trivial
dominance-diversity curve (that is, the simultaneous
existence of both abundant and rare species) and even
more striking that the theory predicts abundance curves
that match observations across a wide range of
ecologies. This paper introduces the {\tt untb} package
of R routines, for numerical simulation of ecological
drift under the unified neutral theory. A range of
visualization, analytical, and simulation tools are
provided in the package and these are presented with
examples in the paper.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-08-31; Accepted 2007-06-15",
}
@Article{Harvill:2007:BRB,
author = "Jane L. Harvill",
title = "Book review: {{\booktitle{Analysis of Integrated and
Co-Integrated Time Series With R}}}",
journal = j-J-AM-STAT-ASSOC,
volume = "102",
number = "477",
pages = "389--390",
month = mar,
year = "2007",
CODEN = "JSTNAL",
DOI = "http://dx.doi.org/10.1198/jasa.2007.s181",
ISSN = "0162-1459 (print), 1537-274X (electronic)",
ISSN-L = "0162-1459",
bibdate = "Thu Aug 26 11:26:31 MDT 2010",
bibsource = "http://www.amstat.org/publications/jasa/;
http://www.math.utah.edu/pub/tex/bib/jamstatassoc2000.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
fjournal = "Journal of the American Statistical Association",
journal-URL = "http://www.tandfonline.com/loi/uasa20",
}
@Article{Heckler:2007:BRB,
author = "Charles E. Heckler",
title = "Book Review: {{\booktitle{Correspondence Analysis and
Data Coding with Java and R}} by Fionn Murtagh}",
journal = j-TECHNOMETRICS,
volume = "49",
number = "1",
pages = "100--100",
month = feb,
year = "2007",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/25471279",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:21:15 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i25471268;
http://www.math.utah.edu/pub/tex/bib/java2000.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics2000.bib",
URL = "http://www.jstor.org/stable/25471279",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Article{Henningsen:2007:SPE,
author = "Arne Henningsen and Jeff D. Hamann",
title = "{\tt systemfit}: {A} Package for Estimating Systems of
Simultaneous Equations in {R}",
journal = j-J-STAT-SOFT,
volume = "23",
number = "4",
pages = "1--40",
month = dec,
year = "2007",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v23/i04",
abstract = "Many statistical analyses (e.g., in econometrics,
biostatistics and experimental design) are based on
models containing systems of structurally related
equations. The {\tt systemfit} package provides the
capability to estimate systems of linear equations
within the R programming environment. For instance,
this package can be used for ``ordinary least squares''
(OLS), ``seemingly unrelated regression'' (SUR), and
the instrumental variable (IV) methods ``two-stage
least squares'' (2SLS) and ``three-stage least
squares'' (3SLS), where SUR and 3SLS estimations can
optionally be iterated. Furthermore, the {\tt
systemfit} package provides tools for several
statistical tests. It has been tested on a variety of
datasets and its reliability is demonstrated.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-03-15; Accepted 2007-10-24",
}
@Article{Hojsgaard:2007:IGG,
author = "S{\o}ren H{\o}jsgaard and Steffen L. Lauritzen",
title = "Inference in Graphical {Gaussian} Models with Edge and
Vertex Symmetries with the {{\tt gRc}} Package for
{R}",
journal = j-J-STAT-SOFT,
volume = "23",
number = "6",
pages = "1--26",
month = dec,
year = "2007",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v23/i06",
abstract = "In this paper we present the R package {\tt gRc} for
statistical inference in graphical Gaussian models in
which symmetry restrictions have been imposed on the
concentration or partial correlation matrix. The models
are represented by coloured graphs where parameters
associated with edges or vertices of same colour are
restricted to being identical. We describe algorithms
for maximum likelihood estimation and discuss model
selection issues. The paper illustrates the practical
use of the {\tt gRc} package.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-09-20; Accepted 2007-09-06",
}
@Article{Johnson:2007:MML,
author = "Matthew S. Johnson",
title = "Marginal Maximum Likelihood Estimation of Item
Response Models in {R}",
journal = j-J-STAT-SOFT,
volume = "20",
number = "10",
pages = "1--24",
month = feb,
year = "2007",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v20/i10",
abstract = "Item response theory (IRT) models are a class of
statistical models used by researchers to describe the
response behaviors of individuals to a set of
categorically scored items. The most common IRT models
can be classified as generalized linear fixed- and/or
mixed-effect models. Although IRT models appear most
often in the psychological testing literature,
researchers in other fields have successfully utilized
IRT-like models in a wide variety of applications. This
paper discusses the three major methods of estimation
in IRT and develops R functions utilizing the built-in
capabilities of the R environment to find the marginal
maximum likelihood estimates of the generalized partial
credit model. The currently available R packages {\tt
ltm} is also discussed.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-10-01; Accepted 2007-02-22",
}
@Article{Jones:2007:DPC,
author = "James Holland Jones",
title = "{{\tt demogR}}: {A} Package for the Construction and
Analysis of Age-structured Demographic Models in {R}",
journal = j-J-STAT-SOFT,
volume = "22",
number = "10",
pages = "1--28",
month = sep,
year = "2007",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v22/i10",
abstract = "The analysis of matrix population models has become a
fundamental tool in ecology, conservation biology, and
life history theory. In this paper, I present {\tt
demogR}, a package for analyzing age-structured
population models in R. The package includes tools for
the construction and analysis of matrix population
models. In addition to the standard analyses commonly
used in evolutionary demography and conservation
biology, {\tt demogR} contains a variety of tools from
classical demography. This includes the construction of
period life tables, and the generation of model
mortality and fertility schedules for human
populations. The tools in {\tt demogR} are generally
applicable to age-structured populations but are
particularly useful for analyzing problems in human
ecology. I illustrate some of the capabilities of the
package by doing an evolutionary demographic analysis
of several human populations.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-02-17; Accepted 2007-08-28",
}
@Article{Kirchner:2007:ARP,
author = "Marc Kirchner and Benjamin Saussen and Hanno Steen and
Judith A. J. Steen and Fred A. Hamprecht",
title = "{\tt amsrpm}: Robust Point Matching for Retention Time
Alignment of {LC\slash MS} Data with {R}",
journal = j-J-STAT-SOFT,
volume = "18",
number = "4",
pages = "1--12",
month = jan,
year = "2007",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v18/i04",
abstract = "Proteomics is the study of the abundance, function and
dynamics of all proteins present in a living organism,
and mass spectrometry (MS) has become its most
important tool due to its unmatched sensitivity,
resolution and potential for high-throughput
experimentation. A frequently used variant of mass
spectrometry is coupled with liquid chromatography (LC)
and is denoted as ``LC/MS''. It produces
two-dimensional raw data, where significant distortions
along one of the dimensions can occur between different
runs on the same instrument, and between instruments. A
compensation of these distortions is required to allow
for comparisons between and inference based on
different experiments. This article introduces the {\tt
amsrpm} software package. It implements a variant of
the Robust Point Matching (RPM) algorithm that is
tailored for the alignment of LC and LC/MS experiments.
Problem-specific enhancements include a specialized
dissimilarity measure, and means to enforce smoothness
and monotonicity of the estimated transformation
function. The algorithm does not rely on pre-specified
landmarks, it is insensitive towards outliers and
capable of modeling nonlinear distortions. Its
usefulness is demonstrated using both simulated and
experimental data. The software is available as an open
source package for the statistical programming language
R.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-09-30; Accepted 2007-07-19",
}
@Article{Krastev:2007:SSS,
author = "Theodor Krastev",
title = "{\tt spectrino} Software: Spectra Visualization and
Preparation for {R}",
journal = j-J-STAT-SOFT,
volume = "18",
number = "10",
pages = "1--16",
month = jan,
year = "2007",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v18/i10",
abstract = "{\tt spectrino} is a spectra preparation software
utility for the R language and environment for
statistical computing. It is an operating-system
specific tool, for use under Microsoft Windows, with
specialized visualization, organization and
preprocessing features for spectra. The software
accepts spectral data from analytical instruments and
then prepares a data structure to be introduced in R.
{\tt spectrino} has a rich set of features to create
data structures and visually manipulate/compare
spectra. The application is accessible by a library of
functions from within R. These commands allow for the
creation and manipulation of data structures in {\tt
spectrino} and the selective extraction of spectral
data. Before exporting, the spectra are preprocessed
according the requirements of consecutive discriminant
analysis. This preprocessing is adjustable by a series
of options.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-10-01; Accepted 2007-01-10",
}
@Article{Lund:2007:BRBa,
author = "Ulric J. Lund",
title = "Book Review: {{\booktitle{A Handbook of Statistical
Analyses Using R}}}",
journal = j-AMER-STAT,
volume = "61",
number = "3",
pages = "277--278",
month = aug,
year = "2007",
CODEN = "ASTAAJ",
DOI = "http://pubs.amstat.org/doi/pdfplus/10.1198/tas.2007.s93",
ISSN = "0003-1305 (print), 1537-2731 (electronic)",
ISSN-L = "0003-1305",
bibdate = "Thu Aug 26 21:48:27 MDT 2010",
bibsource = "http://www.amstat.org/publications/tas/;
http://www.math.utah.edu/pub/tex/bib/amstat2000.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
fjournal = "The American Statistician",
journal-URL = "http://www.tandfonline.com/loi/utas20",
}
@Article{Lund:2007:BRBb,
author = "Robert Lund",
title = "Book review: {{\booktitle{Time Series Analysis and Its
Applications: With R Examples}}}",
journal = j-J-AM-STAT-ASSOC,
volume = "102",
number = "479",
pages = "1079--1079",
month = sep,
year = "2007",
CODEN = "JSTNAL",
DOI = "http://dx.doi.org/10.1198/jasa.2007.s209",
ISSN = "0162-1459 (print), 1537-274X (electronic)",
ISSN-L = "0162-1459",
bibdate = "Thu Aug 26 11:26:31 MDT 2010",
bibsource = "http://www.amstat.org/publications/jasa/;
http://www.math.utah.edu/pub/tex/bib/jamstatassoc2000.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
fjournal = "Journal of the American Statistical Association",
journal-URL = "http://www.tandfonline.com/loi/uasa20",
}
@Article{Machler:2007:SIU,
author = "Martin M{\"a}chler",
title = "Statistics: An Introduction using {R}",
journal = j-AMER-STAT,
volume = "61",
number = "1",
pages = "100--101",
month = feb,
year = "2007",
CODEN = "ASTAAJ",
DOI = "http://pubs.amstat.org/doi/pdfplus/10.1198/tas.2007.s73",
ISSN = "0003-1305 (print), 1537-2731 (electronic)",
ISSN-L = "0003-1305",
bibdate = "Thu Aug 26 21:48:27 MDT 2010",
bibsource = "http://www.amstat.org/publications/tas/;
http://www.math.utah.edu/pub/tex/bib/amstat2000.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
fjournal = "The American Statistician",
journal-URL = "http://www.tandfonline.com/loi/utas20",
}
@Article{Mair:2007:ERM,
author = "Patrick Mair and Reinhold Hatzinger",
title = "Extended {Rasch} Modeling: The {{\tt eRm}} Package for
the Application of {IRT} Models in {R}",
journal = j-J-STAT-SOFT,
volume = "20",
number = "9",
pages = "1--20",
month = feb,
year = "2007",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v20/i09",
abstract = "Item response theory models (IRT) are increasingly
becoming established in social science research,
particularly in the analysis of performance or
attitudinal data in psychology, education, medicine,
marketing and other fields where testing is relevant.
We propose the R package {\tt eRm} (extended Rasch
modeling) for computing Rasch models and several
extensions. A main characteristic of some IRT models,
the Rasch model being the most prominent, concerns the
separation of two kinds of parameters, one that
describes qualities of the subject under investigation,
and the other relates to qualities of the situation
under which the response of a subject is observed.
Using conditional maximum likelihood (CML) estimation
both types of parameters may be estimated independently
from each other. IRT models are well suited to cope
with dichotomous and polytomous responses, where the
response categories may be unordered as well as
ordered. The incorporation of linear structures allows
for modeling the effects of covariates and enables the
analysis of repeated categorical measurements. The {\tt
eRm} package fits the following models: the Rasch
model, the rating scale model (RSM), and the partial
credit model (PCM) as well as linear
reparameterizations through covariate structures like
the linear logistic test model (LLTM), the linear
rating scale model (LRSM), and the linear partial
credit model (LPCM). We use an unitary, efficient CML
approach to estimate the item parameters and their
standard errors. Graphical and numeric tools for
assessing goodness-of-fit are provided.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-10-01; Accepted 2007-02-22",
}
@Book{MarquesdeSa:2007:ASU,
author = "Joaquim P. {Marques de S{\'a}}",
title = "Applied Statistics Using {SPSS}, {STATISTICA},
{MATLAB} and {R}",
publisher = pub-SV,
address = pub-SV:adr,
pages = "xxiv + 506 + 196",
year = "2007",
DOI = "http://dx.doi.org/10.1007/978-3-540-71972-4",
ISBN = "3-540-71972-5",
ISBN-13 = "978-3-540-71972-4",
LCCN = "QA276.4 S2232 2007",
bibdate = "Wed Jul 9 10:26:08 MDT 2014",
bibsource = "fsz3950.oclc.org:210/WorldCat;
http://www.math.utah.edu/pub/tex/bib/matlab.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/spss.bib",
abstract = "This successful textbook is intended for students,
professionals and research workers who need to apply
statistical analysis to a large variety of practical
problems using SPSS, MATLAB, STATISTICA and R. The book
provides a comprehensive coverage of the main
statistical analysis topics important for practical
applications such as data description, statistical
inference, classification and regression, factor
analysis, survival data and directional statistics. The
relevant notions and methods are explained concisely,
illustrated with practical examples using real data,
presented with the distinct intention of clarifying
sensible practical issues. The solutions presented in
the examples are obtained with one of the software
packages in a pedagogical way. It provides guidance on
how to use SPSS, MATLAB, STATISTICA and R in
statistical analysis applications without having to
delve in the manuals. Major improvements of the second
edition are the inclusion of the R language as one of
the application tools, a new section on bootstrap
estimation methods, a revised explanation and treatment
of tree classifiers as well as extra examples and
exercises.",
acknowledgement = ack-nhfb,
subject = "Statistics; Engineering mathematics; Statistics for
Engineering, Physics, Computer Science, Chemistry and
Geosciences; Numerical and Computational Methods in
Engineering; Systems and Information Theory in
Engineering; Appl.Mathematics/Computational Methods of
Engineering",
tableofcontents = "Introduction \\
Presenting and Summarising the Data \\
Estimating Data Parameters \\
Parametric Tests of Hypotheses \\
Non-Parametric Tests of Hypotheses \\
Statistical Classification \\
Data Regression \\
Data Structure Analysis \\
Survival Analysis \\
Directional Data \\
Appendix A \\
Short Survey on Probability Theory \\
Appendix B \\
Distributions \\
Appendix C \\
Point Estimation \\
Appendix D \\
Tables \\
Appendix E \\
Datasets \\
Appendix F \\
Tools",
}
@Article{McLeod:2007:ALT,
author = "A. Ian McLeod and Hao Yu and Zinovi L. Krougly",
title = "Algorithms for Linear Time Series Analysis: With {R}
Package",
journal = j-J-STAT-SOFT,
volume = "23",
number = "5",
pages = "1--26",
month = dec,
year = "2007",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v23/i05",
abstract = "Our {\tt ltsa} package implements the Durbin-Levinson
and Trench algorithms and provides a general approach
to the problems of fitting, forecasting and simulating
linear time series models as well as fitting regression
models with linear time series errors. For
computational efficiency both algorithms are
implemented in C and interfaced to R. Examples are
given which illustrate the efficiency and accuracy of
the algorithms. We provide a second package FGN which
illustrates the use of the {\tt ltsa} package with
fractional Gaussian noise (FGN). It is hoped that the
{\tt ltsa} will provide a base for further time series
software.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2005-10-14; Accepted 2007-11-11",
remark = "Describes package {\tt ltsa}.",
}
@Article{Mevik:2007:PPP,
author = "Bj{\"o}rn-Helge Mevik and Ron Wehrens",
title = "The {\tt pls} Package: Principal Component and Partial
Least Squares Regression in {R}",
journal = j-J-STAT-SOFT,
volume = "18",
number = "2",
pages = "1--24",
month = jan,
year = "2007",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v18/i02",
abstract = "The {\tt pls} package implements principal component
regression (PCR) and partial least squares regression
(PLSR) in R (R Development Core Team 2006b), and is
freely available from the Comprehensive R Archive
Network (CRAN), licensed under the GNU General Public
License (GPL). The user interface is modeled after the
traditional formula interface, as exemplified by lm.
This was done so that people used to R would not have
to learn yet another interface, and also because we
believe the formula interface is a good way of working
interactively with models. It thus has methods for
generic functions like predict, update and coef. It
also has more specialised functions like scores,
loadings and RMSEP, and a flexible cross-validation
system. Visual inspection and assessment is important
in chemometrics, and the {\tt pls} package has a number
of plot functions for plotting scores, loadings,
predictions, coefficients and RMSEP estimates. The
package implements PCR and several algorithms for PLSR.
The design is modular, so that it should be easy to use
the underlying algorithms in other functions. It is our
hope that the package will serve well both for
interactive data analysis and as a building block for
other functions or packages using PLSR or PCR. We will
here describe the package and how it is used for data
analysis, as well as how it can be used as a part of
other packages. Also included is a section about
formulas and data frames, for people not used to the R
modelling idioms.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-10-04; Accepted 2007-01-10",
}
@Article{Mullen:2007:FRP,
author = "Katharine M. Mullen and Ivo H. M. van Stokkum and
Thomas W. Binsl and Jaap Heringa and Johannes H. G. M.
van Beek",
title = "{FluxSimulator}: An {R} Package to Simulate Isotopomer
Distributions in Metabolic Networks",
journal = j-J-STAT-SOFT,
volume = "18",
number = "7",
pages = "1--17",
month = jan,
year = "2007",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v18/i07",
abstract = "The representation of biochemical knowledge in terms
of fluxes (transformation rates) in a metabolic network
is often a crucial step in the development of new drugs
and efficient bioreactors. Mass spectroscopy (MS) and
nuclear magnetic resonance spectroscopy (NMRS) in
combination with ${}^{13}$C labeled substrates are
experimental techniques resulting in data that may be
used to quantify fluxes in the metabolic network
underlying a process. The massive amount of data
generated by spectroscopic experiments increasingly
requires software which models the dynamics of the
underlying biological system. In this work we present
an approach to handle isotopomer distributions in
metabolic networks using an object-oriented programming
approach, implemented using S4 classes in R. The
developed package is called FluxSimulator and provides
a user friendly interface to specify the topological
information of the metabolic network as well as carbon
atom transitions in plain text files. The package
automatically derives the mathematical representation
of the formulated network, and assembles a set of
ordinary differential equations (ODEs) describing the
change of each isotopomer pool over time. These ODEs
are subsequently solved numerically. In a case study
FluxSimulator was applied to an example network. Our
results indicate that the package is able to reproduce
exact changes in isotopomer compositions of the
metabolite pools over time at given flux rates.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-09-28; Accepted 2007-01-10",
}
@Article{Mullen:2007:TRP,
author = "Katharine M. Mullen and Ivo H. M. van Stokkum",
title = "{TIMP}: An {R} Package for Modeling Multi-way
Spectroscopic Measurements",
journal = j-J-STAT-SOFT,
volume = "18",
number = "3",
pages = "1--46",
month = jan,
year = "2007",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v18/i03",
abstract = "TIMP is an R package for modeling multiway
spectroscopic measurements. The package allows for the
simultaneous analysis of datasets collected under
different experimental conditions in terms of a wide
variety of parametric models. Models arising in
spectroscopy data analysis often have some parameters
that are intrinstically nonlinear, and some parameters
that are conditionally linear on estimates of the
nonlinear parameters. TIMP fits such separable
nonlinear models using partitioned variable projection,
a variant of the variable projection algorithm that is
described here for the first time. The of the
partitioned variable projection algorithm allows
fitting many models for spectroscopy datasets using
much less memory as compared to under the standard
variable projection algorithm that is implemented in
nonlinear optimization routines (e.g., the plinear
option of the R function nls), as is shown here. An
overview of modeling with TIMP is also given that
includes several case studies in the application of the
package.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-10-01; Accepted 2007-01-10",
}
@Article{Olive:2007:BRB,
author = "David J. Olive",
title = "Book Review: {{\booktitle{Robust Statistical Methods
with R}} by J. {Jure{\"a} ov{\'a};} J. Picek}",
journal = j-TECHNOMETRICS,
volume = "49",
number = "4",
pages = "496--496",
month = nov,
year = "2007",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/25471404",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:21:19 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i25471379;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics2000.bib",
URL = "http://www.jstor.org/stable/25471404",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Article{Petzoldt:2007:SOO,
author = "Thomas Petzoldt and Karsten Rinke",
title = "{\tt simecol}: An Object-Oriented Framework for
Ecological Modeling in {R}",
journal = j-J-STAT-SOFT,
volume = "22",
number = "9",
pages = "1--31",
month = sep,
year = "2007",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v22/i09",
abstract = "The {\tt simecol} package provides an open structure
to implement, simulate and share ecological models. A
generalized object-oriented architecture improves
readability and potential code re-use of models and
makes {\tt simecol}-models freely extendible and simple
to use. The {\tt simecol} package was implemented in
the S4 class system of the programming language R.
Reference applications, e.g. predator-prey models or
grid models are provided which can be used as a
starting point for own developments. Compact example
applications and the complete code of an
individual-based model of the water flea Daphnia
document the efficient usage of {\tt simecol} for
various purposes in ecological modeling, e.g. scenario
analysis, stochastic simulations and individual based
population dynamics. Ecologists are encouraged to
exploit the abilities of {\tt simecol} to structure
their work and to use R and object-oriented programming
as a suitable medium for the distribution and share of
ecological modeling code.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-02-21; Accepted 2007-06-08",
}
@Article{Polzehl:2007:ASD,
author = "Joerg Polzehl and Karsten Tabelow",
title = "Adaptive Smoothing of Digital Images: The {R} Package
{\tt adimpro}",
journal = j-J-STAT-SOFT,
volume = "19",
number = "1",
pages = "1--17",
month = mar,
year = "2007",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v19/i01",
abstract = "Digital imaging has become omnipresent in the past
years with a bulk of applications ranging from medical
imaging to photography. When pushing the limits of
resolution and sensitivity noise has ever been a major
issue. However, commonly used non-adaptive filters can
do noise reduction at the cost of a reduced effective
spatial resolution only. Here we present a new package
{\tt adimpro} for R, which implements the
propagation-separation approach by (Polzehl and
Spokoiny 2006) for smoothing digital images. This
method naturally adapts to different structures of
different size in the image and thus avoids
oversmoothing edges and fine structures. We extend the
method for imaging data with spatial correlation.
Furthermore we show how the estimation of the
dependence between variance and mean value can be
included. We illustrate the use of the package through
some examples.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-10-27; Accepted 2007-03-27",
}
@Article{Ritter:2007:ICD,
author = "Christian Ritter and Jean Gilliard",
title = "{ImpuR}: {A} Collection of Diagnostic Tools Developed
in {R} in the Context of Peak Impurity Detection in
{HPLC-DAD} but Potentially Useful with Other Types of
Time-Intensity Matrices",
journal = j-J-STAT-SOFT,
volume = "18",
number = "9",
pages = "1--18",
month = jan,
year = "2007",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v18/i09",
abstract = "HPLC-DAD systems generate time intensity (absorbance)
matrices called spectrochromatograms. Under good
experimental conditions, spectro-chromatograms of
elution peaks of pure analytes are bilinear products of
a time peak and an absorbance spectrum. Co-eluting
impurities create deviations from this pure bilinear
structure. Unfortunately, other imperfections, such as
scan averaging, large optical windows, imperfect lamp
alignment, mobile phase fluctuations, etc. also create
departures from the pure bilinear structure. This makes
it hard to distinguish low concentration impurities
from artifacts and hampers safe detection of
contaminants. There are two main ways to deal with such
artifacts: removal and simulation, and ImpuR provides R
functions to do both and to integrate both approaches.
More specifically, ImpuR provides a set of tools to
explore time-intensity matrices with respect to their
bilinear structure and departures from it. It includes
exploratory graphs for bilinear matrices (bilinear
residual graphs and singular value decompositions),
spectral dissimilarity curves via window-evolving
factor analysis with heteroscedasticity correction and
the sine method, methods for removal of artifacts, and
a comprehensive simulation tool to assess the impact of
potential artifacts and to allow for the construction
of guide curves for use with the sine method.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-10-24; Accepted 2007-01-11",
}
@Article{Rossini:2007:SPS,
author = "A. J. Rossini and Luke Tierney and Na Li",
title = "Simple Parallel Statistical Computing in {R}",
journal = j-J-COMPUT-GRAPH-STAT,
volume = "16",
number = "2",
pages = "399--420",
month = jun,
year = "2007",
CODEN = "????",
DOI = "http://pubs.amstat.org/doi/pdfplus/10.1198/106186007X178979",
ISSN = "1061-8600 (print), 1537-2715 (electronic)",
ISSN-L = "1061-8600",
bibdate = "Mon Aug 30 08:15:16 MDT 2010",
bibsource = "http://www.amstat.org/publications/jcgs/;
http://www.math.utah.edu/pub/tex/bib/jcomputgraphstat.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
journal-URL = "http://www.tandfonline.com/loi/ucgs20",
}
@Article{Sardy:2007:BRB,
author = "Sylvain Sardy and Valerie Chavez-Demoulin",
title = "Book Review: {{\booktitle{Modeling Financial Time
Series with S-PLUS (2nd Edition)}}}",
journal = j-J-STAT-SOFT,
volume = "17",
number = "BR-6",
pages = "1--2",
month = feb,
year = "2007",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:15 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v17/b06",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-02-09; Accepted 2007-02-09",
}
@Book{Shoukri:2007:ACD,
author = "M. M. (Mohamed M.) Shoukri and Mohammad A. Chaudhary",
title = "Analysis of correlated data with {SAS} and {R}",
publisher = pub-CHAPMAN-HALL-CRC,
address = pub-CHAPMAN-HALL-CRC:adr,
edition = "Third",
pages = "295",
year = "2007",
ISBN = "1-58488-619-6",
ISBN-13 = "978-1-58488-619-8",
LCCN = "RA652.2.M3 S53 2007",
bibdate = "Tue Sep 6 09:15:00 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
library.ox.ac.uk:210/ADVANCE",
URL = "http://www.loc.gov/catdir/enhancements/fy0733/2007000593-d.htm;
http://www.loc.gov/catdir/toc/ecip078/2007000593.htm",
acknowledgement = ack-nhfb,
remark = "CD-ROM inside back cover. Originally published:
Statistical methods for health sciences. 2nd ed. Boca
Raton, Fla.: CRC Press, c1999.",
subject = "Epidemiology; Statistical methods",
}
@Article{Smith:2007:BRP,
author = "Brian J. Smith",
title = "{\tt boa}: An {R} Package for {MCMC} Output
Convergence Assessment and Posterior Inference",
journal = j-J-STAT-SOFT,
volume = "21",
number = "11",
pages = "1--37",
month = nov,
year = "2007",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v21/i11",
abstract = "Markov chain Monte Carlo (MCMC) is the most widely
used method of estimating joint posterior distributions
in Bayesian analysis. The idea of MCMC is to
iteratively produce parameter values that are
representative samples from the joint posterior. Unlike
frequentist analysis where iterative model fitting
routines are monitored for convergence to a single
point, MCMC output is monitored for convergence to a
distribution. Thus, specialized diagnostic tools are
needed in the Bayesian setting. To this end, the R
package {\tt boa} was created. This manuscript presents
the user's manual for {\tt boa}, which outlines the use
of and methodology upon which the software is based.
Included is a description of the menu system, data
management capabilities, and statistical/graphical
methods for convergence assessment and posterior
inference. Throughout the manual, a linear regression
example is used to illustrate the software.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-04-27; Accepted 2007-10-14",
}
@Article{Starkings:2007:SBRb,
author = "Susan Starkings",
title = "Short Book Review: {{\booktitle{The R Book}} by
Michael J. Crawley}",
journal = j-INT-STAT-REV,
volume = "75",
number = "3",
pages = "425--426",
month = dec,
year = "2007",
CODEN = "ISTRDP",
DOI = "http://dx.doi.org/10.1111/j.1751-5823.2007.00030_16.x;
http://dx.doi.org/10.2307/41509895",
ISSN = "0306-7734 (print), 1751-5823 (electronic)",
ISSN-L = "0306-7734",
bibdate = "Wed Jun 18 06:26:21 MDT 2014",
bibsource = "http://www.jstor.org/stable/i40074048;
http://www.math.utah.edu/pub/tex/bib/intstatrev.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstor.org/stable/41509895",
acknowledgement = ack-nhfb,
fjournal = "International Statistical Review = Revue
Internationale de Statistique",
journal-URL = "http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1751-5823;
http://www.jstor.org/journals/03067734.html",
onlinedate = "10 Dec 2007",
}
@Article{Stasinopoulos:2007:GAM,
author = "D. Mikis Stasinopoulos and Robert A. Rigby",
title = "Generalized Additive Models for Location Scale and
Shape ({GAMLSS}) in {R}",
journal = j-J-STAT-SOFT,
volume = "23",
number = "7",
pages = "1--46",
month = dec,
year = "2007",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v23/i07",
abstract = "GAMLSS is a general framework for fitting regression
type models where the distribution of the response
variable does not have to belong to the exponential
family and includes highly skew and kurtotic continuous
and discrete distribution. GAMLSS allows all the
parameters of the distribution of the response variable
to be modeled as linear/non-linear or smooth functions
of the explanatory variables. This paper starts by
defining the statistical framework of GAMLSS, then
describes the current implementation of GAMLSS in R and
finally gives four different data examples to
demonstrate how GAMLSS can be used for statistical
modelling.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-07-19; Accepted 2007-11-28",
}
@Article{Stubben:2007:EAD,
author = "Chris Stubben and Brook Milligan",
title = "Estimating and Analyzing Demographic Models Using the
{\tt popbio} Package in {R}",
journal = j-J-STAT-SOFT,
volume = "22",
number = "11",
pages = "1--23",
month = sep,
year = "2007",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v22/i11",
abstract = "A complete assessment of population growth and
viability from field census data often requires complex
data manipulations, statistical routines, mathematical
tools, programming environments, and graphical
capabilities. We therefore designed an R package called
{\tt popbio} to facilitate both the construction and
analysis of projection matrix models. The package
consists primarily of the R translation of MATLAB code
found in Caswell (2001) and Morris and Doak (2002) for
the analysis of projection matrix models. The package
also includes methods to estimate vital rates and
construct projection matrix models from census data
typically collected in plant demography studies. In
these studies, vital rates can often be estimated
directly from annual censuses of tagged individuals
using transition frequency tables. Because the
construction of projection matrix models requires
careful management of census data, we describe the
steps to construct a projection matrix in detail.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-02-16; Accepted 2007-08-28",
}
@Article{Su:2007:FSM,
author = "Steve Su",
title = "Fitting Single and Mixture of Generalized Lambda
Distributions to Data via Discretized and Maximum
Likelihood Methods: {GLDEX} in {R}",
journal = j-J-STAT-SOFT,
volume = "21",
number = "9",
pages = "1--17",
month = oct,
year = "2007",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v21/i09",
abstract = "This paper describes the use of GLDEX in R to fit
distributions to empirical data using the discretized
and maximum likelihood methods. The GLDEX package also
provides diagnostic tests to examine the quality of fit
through the resample Kolmogorov-Smirnoff test, quantile
plots and comparison of the mean, variance, skewness
and kurtosis between the empirical data and the fitted
distribution.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-11-07; Accepted 2007-09-15",
}
@Article{Thioulouse:2007:IMD,
author = "Jean Thioulouse and St{\'e}phane Dray",
title = "Interactive Multivariate Data Analysis in {R} with the
{\tt ade4} and {{\tt ade4TkGUI}} Packages",
journal = j-J-STAT-SOFT,
volume = "22",
number = "5",
pages = "1--14",
month = sep,
year = "2007",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v22/i05",
abstract = "{\tt ade4} is a multivariate data analysis package for
the R statistical environment, and {\tt ade4TkGUI} is a
Tcl/Tk graphical user interface for the most essential
methods of {\tt ade4}. Both packages are available on
CRAN. An overview of {\tt ade4TkGUI} is presented, and
the pros and cons of this approach are discussed. We
conclude that command line interfaces (CLI) and
graphical user interfaces (GUI) are complementary. {\tt
ade4TkGUI} can be valuable for biologists and
particularly for ecologists who are often occasional
users of R. It can spare them having to acquire an
in-depth knowledge of R, and it can help first time
users in a first approach.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-01-08; Accepted 2007-10-02",
}
@Article{Tyler:2007:BRB,
author = "David E. Tyler",
title = "Book review: {{\booktitle{Robust Statistical Methods
with R}}}",
journal = j-J-AM-STAT-ASSOC,
volume = "102",
number = "478",
pages = "759--760",
month = jun,
year = "2007",
CODEN = "JSTNAL",
DOI = "http://dx.doi.org/10.1198/jasa.2007.s187",
ISSN = "0162-1459 (print), 1537-274X (electronic)",
ISSN-L = "0162-1459",
bibdate = "Thu Aug 26 11:26:31 MDT 2010",
bibsource = "http://www.amstat.org/publications/jasa/;
http://www.math.utah.edu/pub/tex/bib/jamstatassoc2000.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
fjournal = "Journal of the American Statistical Association",
journal-URL = "http://www.tandfonline.com/loi/uasa20",
}
@Article{vanderArk:2007:MSA,
author = "L. Andries van der Ark",
title = "{Mokken} Scale Analysis in {R}",
journal = j-J-STAT-SOFT,
volume = "20",
number = "11",
pages = "1--19",
month = feb,
year = "2007",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v20/i11",
abstract = "Mokken scale analysis (MSA) is a scaling procedure for
both dichotomous and polytomous items. It consists of
an item selection algorithm to partition a set of items
into Mokken scales and several methods to check the
assumptions of two nonparametric item response theory
models: the monotone homogeneity model and the double
monotonicity model. First, we present an R package
mokken for MSA and explain the procedures. Second, we
show how to perform MSA in R using test data obtained
with the Adjective Checklist.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2006-10-01; Accepted 2007-02-22",
}
@Article{Wickham:2007:RG,
author = "Hadley Wickham and Dianne Cook",
title = "{R} Graphics",
journal = j-AMER-STAT,
volume = "61",
number = "1",
pages = "99--100",
month = feb,
year = "2007",
CODEN = "ASTAAJ",
DOI = "http://pubs.amstat.org/doi/pdfplus/10.1198/tas.2007.s72",
ISSN = "0003-1305 (print), 1537-2731 (electronic)",
ISSN-L = "0003-1305",
bibdate = "Thu Aug 26 21:48:27 MDT 2010",
bibsource = "http://www.amstat.org/publications/tas/;
http://www.math.utah.edu/pub/tex/bib/amstat2000.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
fjournal = "The American Statistician",
journal-URL = "http://www.tandfonline.com/loi/utas20",
}
@Article{Yuan:2007:MLM,
author = "Lester L. Yuan",
title = "Maximum Likelihood Method for Predicting Environmental
Conditions from Assemblage Composition: The {R} Package
{\tt bio.infer}",
journal = j-J-STAT-SOFT,
volume = "22",
number = "3",
pages = "1--20",
month = sep,
year = "2007",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v22/i03",
abstract = "This paper provides a brief introduction to the R
package {\tt bio.infer}, a set of scripts that
facilitates the use of maximum likelihood (ML) methods
for predicting environmental conditions from assemblage
composition. Environmental conditions can often be
inferred from only biological data, and these
inferences are useful when other sources of data are
unavailable. ML prediction methods are statistically
rigorous and applicable to a broader set of problems
than more commonly used weighted averaging techniques.
However, ML methods require a substantially greater
investment of time to program algorithms and to perform
computations. This package is designed to reduce the
effort required to apply ML prediction methods.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-01-10; Accepted 2007-06-22",
}
@Book{Baclawski:2008:IPR,
author = "Kenneth Baclawski",
title = "Introduction to probability with {R}",
volume = "75",
publisher = pub-CHAPMAN-HALL-CRC,
address = pub-CHAPMAN-HALL-CRC:adr,
pages = "xvi + 363",
year = "2008",
ISBN = "1-4200-6521-1 (hardcover)",
ISBN-13 = "978-1-4200-6521-3 (hardcover)",
LCCN = "QA273 .B2535 2008",
bibdate = "Tue Apr 29 20:39:05 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/probstat2000.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
prodorbis.library.yale.edu:7090/voyager;
z3950.loc.gov:7090/Voyager",
series = "Chapman and Hall/CRC texts in statistical science
series",
URL = "http://www.loc.gov/catdir/enhancements/fy0803/2007041288-d.html;
http://www.loc.gov/catdir/toc/ecip082/2007041288.html",
acknowledgement = ack-nhfb,
subject = "Probabilities; R (Computer program language);
Mathematical models",
tableofcontents = "Sets, events, and probability \\
Finite processes \\
Discrete random variables \\
General random variables \\
Statistics and the normal distribution \\
Conditional probability \\
The Poisson process \\
Randomization and compound processes \\
Entropy and information \\
Markov chains \\
Random walks \\
Memorylessness and scale-invariance",
}
@Book{Bartoszynski:2008:PSI,
author = "Robert Bartoszy{\'n}ski and Magdalena
Niewiadomska-Bugaj",
title = "Probability and statistical inference",
publisher = pub-WILEY-INTERSCIENCE,
address = pub-WILEY-INTERSCIENCE:adr,
edition = "Second",
pages = "xii + 647",
year = "2008",
ISBN = "0-471-69693-5 (hardcover)",
ISBN-13 = "978-0-471-69693-3 (hardcover)",
LCCN = "QA273 .B2584 2008",
bibdate = "Wed Sep 15 09:42:15 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
URL = "http://www.loc.gov/catdir/enhancements/fy0826/2008271954-b.html;
http://www.loc.gov/catdir/enhancements/fy0826/2008271954-d.html;
http://www.loc.gov/catdir/enhancements/fy0826/2008271954-t.html;
http://www.wiley.com/WileyCDA/WileyTitle/productCd-0471696935.html",
acknowledgement = ack-nhfb,
remark = "Previous edition: Chichester: Wiley, 1996.",
subject = "probabilities; mathematical statistics",
}
@Article{Bates:2008:SBRa,
author = "Douglas M. Bates",
title = "Short Book Review: {{\booktitle{Data Manipulation with
R}} by Phil Spector}",
journal = j-INT-STAT-REV,
volume = "76",
number = "2",
pages = "324--325",
month = aug,
year = "2008",
CODEN = "ISTRDP",
DOI = "http://dx.doi.org/10.1111/j.1751-5823.2008.00054_25.x;
http://dx.doi.org/10.2307/27919643",
ISSN = "0306-7734 (print), 1751-5823 (electronic)",
ISSN-L = "0306-7734",
bibdate = "Wed Jun 18 06:26:22 MDT 2014",
bibsource = "http://www.jstor.org/stable/i27919607;
http://www.math.utah.edu/pub/tex/bib/intstatrev.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstor.org/stable/27919643",
acknowledgement = ack-nhfb,
fjournal = "International Statistical Review = Revue
Internationale de Statistique",
journal-URL = "http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1751-5823;
http://www.jstor.org/journals/03067734.html",
onlinedate = "28 Jul 2008",
}
@Article{Bates:2008:SBRb,
author = "Douglas M. Bates",
title = "Short Book Review: {{\booktitle{Probability and
Statistics with R}} by Maria Dolores Ugarte, Ana F.
Militino, Alan T. Arnholt}",
journal = j-INT-STAT-REV,
volume = "76",
number = "3",
pages = "447--448",
month = dec,
year = "2008",
CODEN = "ISTRDP",
DOI = "http://dx.doi.org/10.1111/j.1751-5823.2008.00062_12.x;
http://dx.doi.org/10.2307/27919667",
ISSN = "0306-7734 (print), 1751-5823 (electronic)",
ISSN-L = "0306-7734",
bibdate = "Wed Jun 18 06:26:22 MDT 2014",
bibsource = "http://www.jstor.org/stable/i27919648;
http://www.math.utah.edu/pub/tex/bib/intstatrev.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstor.org/stable/27919667",
acknowledgement = ack-nhfb,
fjournal = "International Statistical Review = Revue
Internationale de Statistique",
journal-URL = "http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1751-5823;
http://www.jstor.org/journals/03067734.html",
onlinedate = "3 Dec 2008",
}
@Book{Bivand:2008:ASD,
author = "Roger S. Bivand and Edzer J. Pebesma and Virgilio
G{\'o}mez-Rubio",
title = "Applied spatial data analysis with {R}",
publisher = pub-SV,
address = pub-SV:adr,
pages = "xiv + 374",
year = "2008",
ISBN = "0-387-78170-6",
ISBN-13 = "978-0-387-78170-9",
LCCN = "????",
bibdate = "Sat Jun 13 10:06:25 MDT 2009",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.gbv.de:20011/gvk",
price = "EUR 48.10; SFR 75.00",
series = "Use R!",
URL = "http://deposit.d-nb.de/cgi-bin/dokserv?id=3087668&prov=M&dok_var=1&dok_ext=htm",
acknowledgement = ack-nhfb,
}
@Article{Brock:2008:CRP,
author = "Guy Brock and Vasyl Pihur and Susmita Datta and
Somnath Datta",
title = "{{\tt clValid}}: An {R} Package for Cluster
Validation",
journal = j-J-STAT-SOFT,
volume = "25",
number = "4",
pages = "1--22",
month = mar,
year = "2008",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:17 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v25/i04",
abstract = "The R package {\tt clValid} contains functions for
validating the results of a clustering analysis. There
are three main types of cluster validation measures
available, ``internal'', ``stability'', and
``biological''. The user can choose from nine
clustering algorithms in existing R packages, including
hierarchical, K-means, self-organizing maps (SOM), and
model-based clustering. In addition, we provide a
function to perform the self-organizing tree algorithm
(SOTA) method of clustering. Any combination of
validation measures and clustering methods can be
requested in a single function call. This allows the
user to simultaneously evaluate several clustering
algorithms while varying the number of clusters, to
help determine the most appropriate method and number
of clusters for the dataset of interest. Additionally,
the package can automatically make use of the
biological information contained in the Gene Ontology
(GO) database to calculate the biological validation
measures, via the annotation packages available in
Bioconductor. The function returns an object of S4
class ``{\tt clValid}'', which has summary, plot,
print, and additional methods which allow the user to
display the optimal validation scores and extract
clustering results.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-04-03; Accepted 2008-01-22",
}
@Article{Butts:2008:NPM,
author = "Carter T. Butts",
title = "{\tt network}: {A} Package for Managing Relational
Data in {R}",
journal = j-J-STAT-SOFT,
volume = "24",
number = "2",
pages = "1--36",
month = may,
year = "2008",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v24/i02",
abstract = "Effective memory structures for relational data within
R must be capable of representing a wide range of data
while keeping overhead to a minimum. The {\tt network}
package provides a class which may be used for encoding
complex relational structures composed a vertex set
together with any combination of undirected/directed,
valued/unvalued, dyadic/hyper, and single/multiple
edges; storage requirements are on the order of the
number of edges involved. Some simple constructor,
interface, and visualization functions are provided, as
well as a set of operators to facilitate employment by
end users. The package also supports a C-language API,
which allows developers to work directly with {\tt
network} objects within backend code.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-06-01; Accepted 2007-12-25",
}
@Article{Cao:2008:ORP,
author = "Kim-Anh L{\^e} Cao and Patrick Chabrier",
title = "{\tt ofw}: An {R} Package to Select Continuous
Variables for Multiclass Classification with a
Stochastic Wrapper Method",
journal = j-J-STAT-SOFT,
volume = "28",
number = "9",
pages = "??--??",
month = nov,
year = "2008",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v28/i09",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-02-13; Accepted 2008-07-25",
}
@Book{Chambers:2008:SDA,
author = "John M. Chambers",
title = "Software for data analysis: programming with {R}",
publisher = pub-SV,
address = pub-SV:adr,
pages = "xiv + 498",
year = "2008",
ISBN = "0-387-75935-2, 0-387-75936-0",
ISBN-13 = "978-0-387-75935-7, 978-0-387-75936-4",
LCCN = "QA276.45.R3 C43 2008",
bibdate = "Sat Jun 13 09:37:19 MDT 2009",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Statistics and computing",
acknowledgement = ack-nhfb,
subject = "numerical analysis; data processing; R (Computer
programming language)",
}
@Book{Chang:2008:ADT,
author = "Mark Chang",
title = "Adaptive design theory and implementation using {SAS}
and {R}",
publisher = pub-CHAPMAN-HALL-CRC,
address = pub-CHAPMAN-HALL-CRC:adr,
pages = "xxii + 418",
year = "2008",
ISBN = "1-58488-962-4",
ISBN-13 = "978-1-58488-962-5",
LCCN = "R853.C55 C42 2008",
bibdate = "Thu Jul 10 08:38:53 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Chapman and Hall/CRC biostatistics series",
URL = "http://www.loc.gov/catdir/enhancements/fy0801/2007011412-d.html;
http://www.loc.gov/catdir/toc/ecip0713/2007011412.html",
acknowledgement = ack-nhfb,
subject = "Clinical trials; Design; Computer simulation;
Statistical methods; Adaptive sampling (Statistics);
SAS (Computer file); R (Computer program language);
methods; Research Design; Biometry; Data
Interpretation, Statistical; Software",
tableofcontents = "Introduction \\
Classic Design \\
Multiplicity in Classic Design \\
Theory of Adaptive Design \\
Method with Direct Combination of P-values \\
Method with Combination of Inverse-Normal P-values \\
Conditional Error Approach \\
Implementation of K-stage Design \\
Recursive Two-Stage Adaptive Design \\
Sample Size Re-estimation \\
Drop-loser and Seamless Designs \\
Biomarker Adaptive Design Multiple-Endpoint Adaptive
Trials \\
Response-Adaptive Randomization \\
Response-Adaptive Treatment Switching \\
Bayesian Approach and Decision Theory \\
Clinical Trial Simulation \\
Opportunity, Challenges, and Recommendations",
}
@Book{Claude:2008:MR,
author = "Julien Claude",
title = "Morphometrics with {R}",
publisher = pub-SV,
address = pub-SV:adr,
pages = "xviii + 316",
year = "2008",
ISBN = "0-387-77789-X (paperback)",
ISBN-13 = "978-0-387-77789-4 (paperback)",
LCCN = "QH351 .C53 2008",
bibdate = "Thu Jul 10 08:42:47 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Use R!",
abstract = "Quantifying shape and size variation is essential in
evolutionary biology and in many other disciplines.
Since the ``morphometric revolution of the 90s,'' an
increasing number of publications in applied and
theoretical morphometrics emerged in the new discipline
of statistical shape analysis. The R language and
environment offers a single platform to perform a
multitude of analyses from the acquisition of data to
the production of static and interactive graphs. This
offers an ideal environment to analyze shape variation
and shape change.",
acknowledgement = ack-nhfb,
subject = "Morphology; Statistical methods; Data processing; R
(Computer program language)",
tableofcontents = "Contributors. \\
Abbreviations and notations \\
Introduction \\
Acquiring and manipulating morphometric data \\
Traditional statistics for morphometrics \\
Modern morphometrics based on configurations of
landmarks \\
Statistical analysis of shape using modern
morphometrics \\
Going further with R \\
Appendix A: functions developed in this text \\
Appendix B: packages used in this text \\
References \\
Index",
}
@Book{Cohen:2008:SDR,
author = "Yosef Cohen and Jeremiah Y. Cohen",
title = "Statistics and data with {R}: an applied approach
through examples",
publisher = pub-WILEY,
address = pub-WILEY:adr,
pages = "xviii + 599",
year = "2008",
ISBN = "0-470-75805-8 (cloth), 0-470-72188-X (e-book)",
ISBN-13 = "978-0-470-75805-2 (cloth), 978-0-470-72188-9
(e-book)",
LCCN = "QA276.45.R3 C64 2008",
bibdate = "Wed Sep 15 09:40:50 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
URL = "http://www.loc.gov/catdir/toc/ecip0824/2008032153.html;
http://www.wiley.com/WileyCDA/WileyTitle/productCd-047072188X.html;
http://www.wiley.com/WileyCDA/WileyTitle/productCd-0470758058.html",
acknowledgement = ack-nhfb,
subject = "mathematical statistics; data processing; R (computer
programming language)",
}
@Book{Cornillon:2008:SAR,
author = "Pierre-Andr{\'e} Cornillon and Arnaud Guyader and
Fran{\c{c}}ois Husson and Nicolas J{\'e}gou and Julie
Josse and Maela Kloareg and Eric Matzner-L{\o}ber and
Laurent Rouvi{\`e}re",
title = "Statistiques avec {R}",
publisher = "Presses universitaires de Rennes",
address = "Rennes, France",
pages = "v + 257",
year = "2008",
ISBN = "2-7535-0722-8",
ISBN-13 = "978-2-7535-0722-7",
LCCN = "QA276.45 R3 S797 2008",
bibdate = "Thu Jul 10 13:10:39 MDT 2014",
bibsource = "fsz3950.oclc.org:210/WorldCat;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
series = "Didact statistique",
acknowledgement = ack-nhfb,
}
@Article{Crookston:2008:YRP,
author = "Nicholas L. Crookston and Andrew O. Finley",
title = "{{\tt yaImpute}}: An {R} Package for {kNN}
Imputation",
journal = j-J-STAT-SOFT,
volume = "23",
number = "10",
pages = "1--16",
month = jan,
year = "2008",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v23/i10",
abstract = "This article introduces {\tt yaImpute}, an R package
for nearest neighbor search and imputation. Although
nearest neighbor imputation is used in a host of
disciplines, the methods implemented in the {\tt
yaImpute} package are tailored to imputation-based
forest attribute estimation and mapping. The impetus to
writing the {\tt yaImpute} is a growing interest in
nearest neighbor imputation methods for spatially
explicit forest inventory, and a need within this
research community for software that facilitates
comparison among different nearest neighbor search
algorithms and subsequent imputation techniques. {\tt
yaImpute} provides directives for defining the search
space, subsequent distance calculation, and imputation
rules for a given number of nearest neighbors. Further,
the package offers a suite of diagnostics for
comparison among results generated from different
imputation analyses and a set of functions for mapping
imputation results.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-06-20; Accepted 2007-10-10",
}
@Book{Cryer:2008:TSA,
author = "Jonathan D. Cryer and Kung-sik Chan",
title = "Time series analysis: with applications in {R}",
publisher = pub-SV,
address = pub-SV:adr,
edition = "Second",
pages = "xiii + 491",
year = "2008",
DOI = "http://dx.doi.org/10.1007/978-0-387-75959-3",
ISBN = "1-4419-2613-5 (paperback), 0-387-75958-1,
0-387-75959-X (e-book)",
ISBN-13 = "978-1-4419-2613-5 (paperback), 978-0-387-75958-6,
978-0-387-75959-3 (e-book)",
LCCN = "QA280 .C78 2008",
bibdate = "Thu Jul 10 09:44:41 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Springer texts in statistics",
URL = "http://www.loc.gov/catdir/toc/fy0804/2008923058.html",
acknowledgement = ack-nhfb,
subject = "Time-series analysis; Data processing; R (Computer
program language)",
tableofcontents = "Introduction \\
Fundamental concepts \\
Trends \\
Models for stationary time series \\
Models for nonstationary time series \\
Model specification \\
Parameter estimation \\
Model diagnostics \\
Forecasting \\
Seasonal models \\
Time series regression models \\
Time series models of heteroscedasticity \\
Introduction to spectral analysis \\
Estimating the spectrum \\
Threshold models \\
Appendix: an introduction to R",
}
@Book{Dalgaard:2008:ISR,
author = "Peter Dalgaard",
title = "Introductory Statistics with {R}",
publisher = pub-SV,
address = pub-SV:adr,
edition = "Second",
pages = "xvi + 363",
year = "2008",
ISBN = "0-387-79053-5 (paperback)",
ISBN-13 = "978-0-387-79053-4 (paperback)",
ISSN = "1431-8784",
LCCN = "QA276.45.R3 D35 2008",
bibdate = "Sat Jun 13 08:44:00 MDT 2009",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Statistics and computing",
acknowledgement = ack-nhfb,
remark = "First edition \cite{Dalgaard:2002:ISR}.",
subject = "statistics; data processing; R (Computer program
language)",
}
@Article{Dutang:2008:ARP,
author = "Christophe Dutang and Vincent Goulet and Mathieu
Pigeon",
title = "{\tt actuar}: An {R} Package for Actuarial Science",
journal = j-J-STAT-SOFT,
volume = "25",
number = "7",
pages = "1--37",
month = mar,
year = "2008",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:17 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v25/i07",
abstract = "{\tt actuar} is a package providing additional
Actuarial Science functionality to the R statistical
system. The project was launched in 2005 and the
package is available on the Comprehensive R Archive
Network since February 2006. The current version of the
package contains functions for use in the fields of
loss distributions modeling, risk theory (including
ruin theory), simulation of compound hierarchical
models and credibility theory. This paper presents in
detail but with few technical terms the most recent
version of the package.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-11-16; Accepted 2008-02-14",
}
@Article{Feinerer:2008:TMI,
author = "Ingo Feinerer and Kurt Hornik and David Meyer",
title = "Text Mining Infrastructure in {R}",
journal = j-J-STAT-SOFT,
volume = "25",
number = "5",
pages = "1--54",
month = mar,
year = "2008",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:17 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v25/i05",
abstract = "During the last decade text mining has become a widely
used discipline utilizing statistical and machine
learning methods. We present the {\tt tm} package which
provides a framework for text mining applications
within R. We give a survey on text mining facilities in
R and explain how typical application tasks can be
carried out using our framework. We present techniques
for count-based analysis methods, text clustering, text
classification and string kernels.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-09-05; Accepted 2008-02-10",
}
@Article{Feng:2008:CDI,
author = "Dai Feng and Luke Tierney",
title = "Computing and Displaying Isosurfaces in {R}",
journal = j-J-STAT-SOFT,
volume = "28",
number = "1",
pages = "??--??",
month = sep,
year = "2008",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v28/i01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-05-28; Accepted 2008-09-04",
}
@TechReport{Filzmoser:2008:LRS,
author = "Peter Filzmoser",
title = "{\LaTeX} and {R} via {Sweave}: An example document how
to use {Sweave}",
type = "Technical report",
institution = "Vienna University of Technology",
address = "Wiedner Haupstra{\ss}e 8-10, A-1040 Wien, Austria",
pages = "6",
day = "12",
month = mar,
year = "2008",
bibdate = "Sat Jul 5 19:14:35 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/litprog.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.statistik.tuwien.ac.at/public/filz/students/SweaveExa.pdf",
acknowledgement = ack-nhfb,
}
@Article{Freeman:2008:PRP,
author = "Elizabeth A. Freeman and Gretchen Moisen",
title = "{{\tt PresenceAbsence}}: An {R} Package for Presence
Absence Analysis",
journal = j-J-STAT-SOFT,
volume = "23",
number = "11",
pages = "1--31",
month = jan,
year = "2008",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v23/i11",
abstract = "The {\tt PresenceAbsence} package for R provides a set
of functions useful when evaluating the results of
presence-absence analysis, for example, models of
species distribution or the analysis of diagnostic
tests. The package provides a toolkit for selecting the
optimal threshold for translating a probability surface
into presence-absence maps specifically tailored to
their intended use. The package includes functions for
calculating threshold dependent measures such as
confusion matrices, percent correctly classified (PCC),
sensitivity, specificity, and Kappa, and produces plots
of each measure as the threshold is varied. It also
includes functions to plot the Receiver Operator
Characteristic (ROC) curve and calculates the
associated area under the curve (AUC), a threshold
independent measure of model quality. Finally, the
package computes optimal thresholds by multiple
criteria, and plots these optimized thresholds on the
graphs.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-04-19; Accepted 2008-01-08",
}
@Article{Gonzalez:2008:CRP,
author = "Ignacio Gonz{\'a}lez and S{\'e}bastien D{\'e}jean and
Pascal G. P. Martin and Alain Baccini",
title = "{{\tt CCA}}: An {R} Package to Extend Canonical
Correlation Analysis",
journal = j-J-STAT-SOFT,
volume = "23",
number = "12",
pages = "1--14",
month = jan,
year = "2008",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:16 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v23/i12",
abstract = "Canonical correlations analysis (CCA) is an
exploratory statistical method to highlight
correlations between two data sets acquired on the same
experimental units. The {\tt cancor()} function in R (R
Development Core Team 2007) performs the core of
computations but further work was required to provide
the user with additional tools to facilitate the
interpretation of the results. We implemented an R
package, {\tt CCA}, freely available from the
Comprehensive R Archive Network (CRAN,
\path=http://CRAN.R-project.org/=), to develop
numerical and graphical outputs and to enable the user
to handle missing values. The {\tt CCA} package also
includes a regularized version of {\tt CCA} to deal
with data sets with more variables than units.
Illustrations are given through the analysis of a data
set coming from a nutrigenomic study in the mouse.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-03-20; Accepted 2007-12-04",
}
@Article{Grothendieck:2008:BRB,
author = "Gabor Grothendieck",
title = "Book Review: {{\booktitle{lattice: Multivariate Data
Visualization with R}}}",
journal = j-J-STAT-SOFT,
volume = "25",
number = "BR-2",
pages = "1--3",
month = may,
year = "2008",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:17 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v25/b02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-05-08; Accepted 2008-05-08",
}
@Article{Hahsler:2008:GTO,
author = "Michael Hahsler and Kurt Hornik and Christian Buchta",
title = "Getting Things in Order: An Introduction to the {R}
Package {\tt seriation}",
journal = j-J-STAT-SOFT,
volume = "25",
number = "3",
pages = "1--34",
month = mar,
year = "2008",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:17 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v25/i03",
abstract = "Seriation, i.e., finding a suitable linear order for a
set of objects given data and a loss or merit function,
is a basic problem in data analysis. Caused by the
problem's combinatorial nature, it is hard to solve for
all but very small sets. Nevertheless, both exact
solution methods and heuristics are available. In this
paper we present the package {\tt seriation} which
provides an infrastructure for seriation with R. The
infrastructure comprises data structures to represent
linear orders as permutation vectors, a wide array of
seriation methods using a consistent interface, a
method to calculate the value of various loss and merit
functions, and several visualization techniques which
build on {\tt seriation}. To illustrate how easily the
package can be applied for a variety of applications, a
comprehensive collection of examples is presented.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-09-11; Accepted 2008-02-05",
}
@Article{Hanley:2008:SWI,
author = "James A. Hanley and Marilyse Julien and Erica E. M.
Moodie",
title = "{Student}'s $z$, $t$, and $s$: What if {Gosset} had
{R}?",
journal = j-AMER-STAT,
volume = "62",
number = "1",
pages = "64--69",
month = feb,
year = "2008",
CODEN = "ASTAAJ",
DOI = "http://pubs.amstat.org/doi/pdfplus/10.1198/000313008X269602",
ISSN = "0003-1305 (print), 1537-2731 (electronic)",
ISSN-L = "0003-1305",
bibdate = "Thu Apr 24 06:00:47 2014",
bibsource = "http://www.amstat.org/publications/tas/;
http://www.math.utah.edu/pub/tex/bib/amstat2000.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
fjournal = "The American Statistician",
journal-URL = "http://www.tandfonline.com/loi/utas20",
}
@Book{Hartung:2008:SMA,
author = "Joachim Hartung and Guido Knapp and Bimal K. Sinha",
title = "Statistical meta-analysis with applications",
publisher = pub-WILEY,
address = pub-WILEY:adr,
pages = "xv + 247",
year = "2008",
ISBN = "0-470-29089-7 (cloth), 0-470-38633-9 (e-book)",
ISBN-13 = "978-0-470-29089-7 (cloth), 978-0-470-38633-0
(e-book)",
LCCN = "QA277 .H373 2008",
bibdate = "Wed Sep 15 09:38:18 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Wiley series in probability and statistics",
URL = "http://www.loc.gov/catdir/enhancements/fy0811/2008009435-d.html;
http://www.loc.gov/catdir/enhancements/fy0814/2008009435-t.html;
http://www.wiley.com/WileyCDA/WileyTitle/productCd-0470386339.html",
abstract = "Statistical Meta-Analysis with Applications presents
the necessary statistical methodologies that allow
readers to tackle the four main stages of
meta-analysis: problem formulation, data collection,
data evaluation, and data analysis and interpretation.
Combining the authors' expertise on the topic with a
wealth of up-to-date information, this book
successfully introduces the essential statistical
practices for making thorough and accurate discoveries
across a wide array of diverse fields, such as
business, public health, biostatistics, and
environmental studies.",
acknowledgement = ack-nhfb,
subject = "statistical hypothesis testing; meta-analysis;
meta-analysis as topic; data interpretation,
statistical; statistics as topic; methods",
tableofcontents = "Introduction \\
Various measures of effect size \\
Combining independent tests \\
Methods of combining effect sizes \\
Inference about a common mean of several univariate
normal populations \\
Tests of homogeneity in meta-analysis \\
One-way random effects model \\
Combining controlled trials with normal outcomes \\
Combining controlled trials with discrete outcomes \\
Meta-regression \\
Multivariate meta-analysis \\
Bayesian meta-analysis \\
Publication bias \\
14. Recovery of inter-block information \\
Combination of polls \\
Vote counting procedures \\
Computational aspects data sets",
}
@Article{Hui:2008:LRP,
author = "Wallace Hui and Yulia R. Gel and Joseph L. Gastwirth",
title = "{\tt lawstat}: An {R} Package for Law, Public Policy
and Biostatistics",
journal = j-J-STAT-SOFT,
volume = "28",
number = "3",
pages = "??--??",
month = oct,
year = "2008",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v28/i03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-11-12; Accepted 2008-01-11",
}
@Article{Hyndman:2008:ATS,
author = "Rob J. Hyndman and Yeasmin Khandakar",
title = "Automatic Time Series Forecasting: The {\tt forecast}
Package for {R}",
journal = j-J-STAT-SOFT,
volume = "27",
number = "3",
pages = "??--??",
month = jul,
year = "2008",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:40 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v27/i03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-05-29; Accepted 2008-03-22",
}
@Article{Iacus:2008:IMF,
author = "Stefano Iacus and Giuseppe Porro",
title = "Invariant and Metric Free Proximities for Data
Matching: An {R} Package",
journal = j-J-STAT-SOFT,
volume = "25",
number = "11",
pages = "1--22",
month = apr,
year = "2008",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:17 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v25/i11",
abstract = "Data matching is a typical statistical problem in non
experimental and/or observational studies or, more
generally, in cross-sectional studies in which one or
more data sets are to be compared. Several methods are
available in the literature, most of which based on a
particular metric or on statistical models, either
parametric or nonparametric. In this paper we present
two methods to calculate a proximity which have the
property of being invariant under monotonic
transformations. These methods require at most the
notion of ordering. An open-source software in the form
of a R package is also presented.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-03-19; Accepted 2008-03-31",
remark = "Describes package {\tt rrp}.",
}
@Book{Iacus:2008:SIS,
author = "Stefano M. Iacus",
title = "Simulation and Inference for Stochastic Differential
Equations: With {R} Examples",
volume = "??",
publisher = pub-SV,
address = pub-SV:adr,
pages = "xviii + 284",
year = "2008",
CODEN = "????",
DOI = "http://dx.doi.org/10.1007/978-0-387-75839-8",
ISBN = "0-387-75839-9, 0-387-75838-0",
ISBN-13 = "978-0-387-75839-8, 978-0-387-75838-1",
ISSN = "0172-7397",
ISSN-L = "0172-7397",
LCCN = "QA274.23 .I23 2008",
bibdate = "Thu Jun 19 06:41:21 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/probstat2000.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
series = "Springer Series in Statistics",
URL = "http://link.springer.com/book/10.1007/978-0-387-75839-8",
abstract = "This book is unique because of its focus on the
practical implementation of the simulation and
estimation methods presented. The book will be useful
to practitioners and students with only a minimal
mathematical background because of the many R programs,
and to more mathematically-educated practitioners. Many
of the methods presented in the book have not been used
much in practice because the lack of an implementation
in a unified framework. This book fills the gap. With
the R code included in this book, a lot of useful
methods become easy to use for practitioners and
students. An R package called ``sde'' provides
functions with easy interfaces ready to be used on
empirical data from real life applications. Although it
contains a wide range of results, the book has an
introductory character and necessarily does not cover
the whole spectrum of simulation and inference for
general stochastic differential equations. The book is
organized into four chapters. The first one introduces
the subject and presents several classes of processes
used in many fields of mathematics, computational
biology, finance and the social sciences. The second
chapter is devoted to simulation schemes and covers new
methods not available in other publications. The third
one focuses on parametric estimation techniques. In
particular, it includes exact likelihood inference,
approximated and pseudo-likelihood methods, estimating
functions, generalized method of moments, and other
techniques. The last chapter contains miscellaneous
topics like nonparametric estimation, model
identification and change point estimation. The reader
who is not an expert in the R language will find a
concise introduction to this environment focused on the
subject of the book. A documentation page is available
at the end of the book for each R function presented in
the book. Stefano M. Iacus is associate professor of
Probability and Mathematical Statistics at the
University of Milan, Department of Economics, Business
and Statistics. He has a PhD in Statistics at Padua
University, Italy and in Mathematics at Universit{\'e}
du Maine, France. He is a member of the R Core team for
the development of the R statistical environment, Data
Base manager for the Current Index to Statistics, and
IMS Group Manager for the Institute of Mathematical
Statistics. He has been associate editor of the Journal
of Statistical Software.",
acknowledgement = ack-nhfb,
remark = "Most volumes in this series are unnumbered.",
series-URL = "http://link.springer.com/bookseries/692",
subject = "Stochastic differential equations; Stochastic
Processes; Signal, Image and Speech Processing;
Simulation and Modeling; Quantitative Finance;
Statistics and Computing/Statistics Programs;
Computational Mathematics and Numerical Analysis;
{\'E}quations diff{\'e}rentielles stochastiques;
MATHEMATICS; Probability and Statistics; General;
Interferenz; Stochastische Differentialgleichung;
Stochastik; Simulation; Stochastic differential
equations.",
tableofcontents = "Stochastic processes and stochastic differential
equations \\
Numerical methods for SDE \\
Parametric estimation \\
Miscellaneous topics",
}
@Article{Kiermeier:2008:VAA,
author = "Andreas Kiermeier",
title = "Visualizing and Assessing Acceptance Sampling Plans:
The {R} Package {{\tt AcceptanceSampling}}",
journal = j-J-STAT-SOFT,
volume = "26",
number = "6",
pages = "??--??",
month = jul,
year = "2008",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:40 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v26/i06",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-06-29; Accepted 2008-06-24",
}
@Book{Kleiber:2008:AER,
author = "Christian Kleiber and Achim Zeileis",
title = "Applied Econometrics with {R}",
publisher = pub-SV,
address = pub-SV:adr,
pages = "x + 221",
year = "2008",
ISBN = "0-387-77316-9",
ISBN-13 = "978-0-387-77316-2",
LCCN = "QA276.45.R3 K58 2008",
bibdate = "Thu Jul 10 08:55:16 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
URL = "http://www.loc.gov/catdir/enhancements/fy0903/2008934356-d.html;
http://www.loc.gov/catdir/enhancements/fy0903/2008934356-t.html",
abstract = "This is the first book on applied econometrics using
the R system for statistical computing and graphics. It
presents hands-on examples for a wide range of
econometric models, from classical linear regression
models for cross-section, time series or panel data and
the common non-linear models of microeconometrics such
as logit, probit and tobit models, to recent
semiparametric extensions. In addition, it provides a
chapter on programming, including simulations,
optimization, and an introduction to R tools enabling
reproducible econometric research.\par
The goal of this book is to provide a guide to R for
users with a background in economics or the social
sciences. Readers are assumed to have a background in
basic statistics and econometrics at the undergraduate
level. A large number of examples should make the book
of interest to graduate students, researchers and
practitioners alike.",
acknowledgement = ack-nhfb,
author-dates = "1966--",
subject = "R (Computer program language); Econometrics; Data
processing; Statistics; Business; Management;
MATHEMATICS; Probability and Statistics; General; R
(Programm); {\"O}konometrie; Data processing; R
(Computer program language); Science {\'e}conomique;
Affaires; {\'E}conomie de l'entreprise.",
tableofcontents = "Introduction \\
Basics \\
Linear Regression \\
Diagnostics and alternative methods of regression \\
Models of microeconometrics \\
Time series \\
Programming your own analysis \\
References \\
Index",
}
@Article{Knoblauch:2008:MML,
author = "Kenneth Knoblauch and Laurence T. Maloney",
title = "{MLDS}: Maximum Likelihood Difference Scaling in {R}",
journal = j-J-STAT-SOFT,
volume = "25",
number = "2",
pages = "1--26",
month = mar,
year = "2008",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:17 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v25/i02",
abstract = "The {\tt MLDS} package in the R programming language
can be used to estimate perceptual scales based on the
results of psychophysical experiments using the method
of difference scaling. In a difference scaling
experiment, observers compare two supra-threshold
differences (a,b) and (c,d) on each trial. The approach
is based on a stochastic model of how the observer
decides which perceptual difference (or interval) (a,b)
or (c,d) is greater, and the parameters of the model
are estimated using a maximum likelihood criterion. We
also propose a method to test the model by evaluating
the self-consistency of the estimated scale. The
package includes an example in which an observer judges
the differences in correlation between scatterplots.
The example may be readily adapted to estimate
perceptual scales for arbitrary physical continua.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-04-17; Accepted 2008-01-09",
}
@Article{Kuhn:2008:BPM,
author = "Max Kuhn",
title = "Building Predictive Models in {R} Using the {\tt
caret} Package",
journal = j-J-STAT-SOFT,
volume = "28",
number = "5",
pages = "??--??",
month = nov,
year = "2008",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v28/i05",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-04-22; Accepted 2008-08-18",
}
@Article{Le:2008:FRP,
author = "S{\'e}bastien L{\^e} and Julie Josse and
Fran{\c{c}}ois Husson",
title = "{{\tt FactoMineR}}: An {R} Package for Multivariate
Analysis",
journal = j-J-STAT-SOFT,
volume = "25",
number = "1",
pages = "1--18",
month = mar,
year = "2008",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:17 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v25/i01",
abstract = "In this article, we present {\tt FactoMineR} an R
package dedicated to multivariate data analysis. The
main features of this package is the possibility to
take into account different types of variables
(quantitative or categorical), different types of
structure on the data (a partition on the variables, a
hierarchy on the variables, a partition on the
individuals) and finally supplementary information
(supplementary individuals and variables). Moreover,
the dimensions issued from the different exploratory
data analyses can be automatically described by
quantitative and/or categorical variables. Numerous
graphics are also available with various options.
Finally, a graphical user interface is implemented
within the {\tt Rcmdr} environment in order to propose
an user friendly package.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-04-05; Accepted 2008-01-09",
}
@Article{Leiva:2008:RPG,
author = "V{\'\i}ctor Leiva and Hugo Hern{\'a}ndez and Antonio
Sanhueza",
title = "An {R} Package for a General Class of Inverse
{Gaussian} Distributions",
journal = j-J-STAT-SOFT,
volume = "26",
number = "4",
pages = "1--21",
month = jun,
year = "2008",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:17 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v26/i04",
abstract = "The inverse Gaussian distribution is a positively
skewed probability model that has received great
attention in the last 20 years. Recently, a family that
generalizes this model called inverse Gaussian type
distributions has been developed. The new R package
named {\tt ig} has been designed to analyze data from
inverse Gaussian type distributions. This package
contains basic probabilistic functions, lifetime
indicators and a random number generator from this
model. Also, parameter estimates and diagnostics
analysis can be obtained using likelihood methods by
means of this package. In addition, goodness-of-fit
methods are implemented in order to detect the
suitability of the model to the data. The capabilities
and features of the {\tt ig} package are illustrated
using simulated and real data sets. Furthermore, some
new results related to the inverse Gaussian type
distribution are also obtained. Moreover, a simulation
study is conducted for evaluating the estimation method
implemented in the {\tt ig} package.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-09-13; Accepted 2008-03-31",
remark = "Describes package {\tt ig}.",
}
@Book{Leuangthong:2008:SPG,
author = "Oy Leuangthong and K. Daniel Khan and Clayton V.
Deutsch",
title = "Solved problems in geostatistics",
publisher = pub-WILEY,
address = pub-WILEY:adr,
pages = "vii + 207",
year = "2008",
ISBN = "0-470-17792-6 (paperback)",
ISBN-13 = "978-0-470-17792-1 (paperback)",
LCCN = "QE33.2.S82 L48 2008",
bibdate = "Wed Sep 15 09:36:31 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
URL = "http://www.loc.gov/catdir/toc/ecip0811/2008007625.html;
http://www.wiley.com/WileyCDA/WileyTitle/productCd-0470177926.html",
acknowledgement = ack-nhfb,
subject = "geology; statistical methods; problems, exercises,
etc; data processing",
}
@Article{Maindonald:2008:SBR,
author = "John H. Maindonald",
title = "Short Book Review: {{\booktitle{Interactive and
Dynamic Graphics for Data Analysis --- With R and
GGobi}} by Dianne Cook; Deborah F. Swayne}",
journal = j-INT-STAT-REV,
volume = "76",
number = "3",
pages = "437--438",
month = dec,
year = "2008",
CODEN = "ISTRDP",
DOI = "http://dx.doi.org/10.1111/j.1751-5823.2008.00062_2.x;
http://dx.doi.org/10.2307/27919657",
ISSN = "0306-7734 (print), 1751-5823 (electronic)",
ISSN-L = "0306-7734",
bibdate = "Wed Jun 18 06:26:22 MDT 2014",
bibsource = "http://www.jstor.org/stable/i27919648;
http://www.math.utah.edu/pub/tex/bib/intstatrev.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstor.org/stable/27919657",
acknowledgement = ack-nhfb,
fjournal = "International Statistical Review = Revue
Internationale de Statistique",
journal-URL = "http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1751-5823;
http://www.jstor.org/journals/03067734.html",
onlinedate = "3 Dec 2008",
}
@Article{McLeod:2008:ISA,
author = "A. Ian McLeod and Ying Zhang",
title = "Improved Subset Autoregression: With {R} Package",
journal = j-J-STAT-SOFT,
volume = "28",
number = "2",
pages = "??--??",
month = oct,
year = "2008",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v28/i02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-08-26; Accepted 2008-07-03",
}
@Book{Nason:2008:WMS,
author = "G. P. Nason",
title = "Wavelet methods in statistics with {R}",
publisher = pub-SV,
address = pub-SV:adr,
pages = "x + 257",
year = "2008",
DOI = "http://dx.doi.org/10.1007/978-0-387-75961-6",
ISBN = "0-387-75960-3 (paperback), 0-387-75961-1 (e-book)",
ISBN-13 = "978-0-387-75960-9 (paperback), 978-0-387-75961-6
(e-book)",
LCCN = "QA403.3 .N37 2008",
bibdate = "Thu Jul 10 09:19:41 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Use R!",
abstract = "Wavelet methods have recently undergone a rapid period
of development with important implications for a number
of disciplines including statistics. This book has
three main objectives: (i) providing an introduction to
wavelets and their uses in statistics; (ii) acting as a
quick and broad reference to many developments in the
area; (iii) interspersing R code that enables the
reader to learn the methods, to carry out their own
analyses, and further develop their own ideas. The book
code is designed to work with the freeware R package
WaveThresh4, but the book can be read independently of
R.\par
The book is aimed both at Masters/Ph.D. students in a
numerate discipline (such as statistics, mathematics,
economics, engineering, computer science, and physics)
and postdoctoral researchers/users interested in
statistical wavelet methods.",
acknowledgement = ack-nhfb,
subject = "Wavelets (Mathematics); Mathematical statistics; R
(Computer program language); Wavelets (Mathematics);
Mathematical statistics.; R (Computer program
language); Mathematical statistics.; R (Computer
program language); Wavelets (Mathematics)",
tableofcontents = "Introduction \\
Wavelets \\
Wavelet shrinkage \\
Related wavelet smoothing techniques \\
Multiscale time series analysis \\
Multiscale variance stabilization \\
A. R software for wavelets and statistics \\
B. Notation and some mathematical concepts \\
C. Survival function code",
}
@Article{Nordhausen:2008:SBR,
author = "Klaus Nordhausen",
title = "Short Book Review: {{\booktitle{Lattice: Multivariate
Data Visualization with R}} by Deepayan Sarkar}",
journal = j-INT-STAT-REV,
volume = "76",
number = "3",
pages = "440--440",
month = dec,
year = "2008",
CODEN = "ISTRDP",
DOI = "http://dx.doi.org/10.1111/j.1751-5823.2008.00062_5.x;
http://dx.doi.org/10.2307/27919660",
ISSN = "0306-7734 (print), 1751-5823 (electronic)",
ISSN-L = "0306-7734",
bibdate = "Wed Jun 18 06:26:22 MDT 2014",
bibsource = "http://www.jstor.org/stable/i27919648;
http://www.math.utah.edu/pub/tex/bib/intstatrev.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstor.org/stable/27919660",
acknowledgement = ack-nhfb,
fjournal = "International Statistical Review = Revue
Internationale de Statistique",
journal-URL = "http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1751-5823;
http://www.jstor.org/journals/03067734.html",
onlinedate = "3 Dec 2008",
}
@Article{OBrien:2008:SBRa,
author = "C. M. O'Brien",
title = "Short Book Review: {{\booktitle{Adaptive Design Theory
and Implementation Using SAS and R}} by Mark Chang}",
journal = j-INT-STAT-REV,
volume = "76",
number = "2",
pages = "300--300",
month = aug,
year = "2008",
CODEN = "ISTRDP",
DOI = "http://dx.doi.org/10.1111/j.1751-5823.2008.00054_1.x;
http://dx.doi.org/10.2307/27919619",
ISSN = "0306-7734 (print), 1751-5823 (electronic)",
ISSN-L = "0306-7734",
bibdate = "Wed Jun 18 06:26:22 MDT 2014",
bibsource = "http://www.jstor.org/stable/i27919607;
http://www.math.utah.edu/pub/tex/bib/intstatrev.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstor.org/stable/27919619",
acknowledgement = ack-nhfb,
fjournal = "International Statistical Review = Revue
Internationale de Statistique",
journal-URL = "http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1751-5823;
http://www.jstor.org/journals/03067734.html",
onlinedate = "28 Jul 2008",
}
@Article{Peng:2008:CDS,
author = "Roger Peng",
title = "Caching and Distributing Statistical Analyses in {R}",
journal = j-J-STAT-SOFT,
volume = "26",
number = "7",
pages = "??--??",
month = jul,
year = "2008",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:40 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v26/i07",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-10-26; Accepted 2008-07-10",
}
@Book{Peng:2008:SME,
author = "Roger D. Peng and Francesca Dominici",
title = "Statistical methods for environmental epidemiology
with {R}: a case study in air pollution and health",
publisher = pub-SV,
address = pub-SV:adr,
pages = "ix + 144",
year = "2008",
DOI = "http://dx.doi.org/10.1007/978-0-387-78167-9",
ISBN = "0-387-78166-8 (paperback), 0-387-78167-6 (e-book)",
ISBN-13 = "978-0-387-78166-2 (paperback), 978-0-387-78167-9
(e-book)",
LCCN = "TD883.1 .P46 2008",
bibdate = "Thu Jul 10 08:52:58 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Use R!",
abstract = "Advances in statistical methodology and computing have
played an important role in allowing researchers to
more accurately assess the health effects of ambient
air pollution. The methods and software developed in
this area are applicable to a wide array of problems in
environmental epidemiology. This book provides an
overview of the methods used for investigating the
health effects of air pollution and gives examples and
case studies in R which demonstrate the application of
those methods to real data. The book will be useful to
statisticians, epidemiologists, and graduate students
working in the area of air pollution and health and
others analyzing similar data.\par
The authors describe the different existing approaches
to statistical modeling and cover basic aspects of
analyzing and understanding air pollution and health
data. The case studies in each chapter demonstrate how
to use R to apply and interpret different statistical
models and to explore the effects of potential
confounding factors. A working knowledge of R and
regression modeling is assumed. In-depth knowledge of R
programming is not required to understand and run the
examples.",
acknowledgement = ack-nhfb,
subject = "Air Pollution; statistics and numerical data;
Environmental Health; Models, Statistical; Software;
Statistics as Topic; Air; Pollution; Mathematical
models; R (Computer program language); Epidemiologie.;
Statistische Analyse.; Mathematical models.;
Environmental health.; R (Computer program language)",
tableofcontents = "Overview of the data \\
Overview of statistical modeling \\
Statistical issues related to air pollution and health
\\
Summarizing evidence of the health effects of air
pollution \\
Case studies",
}
@Book{Pfaff:2008:AIC,
author = "Bernhard Pfaff",
title = "Analysis of integrated and cointegrated time series
with {R}",
publisher = pub-SV,
address = pub-SV:adr,
edition = "Second",
pages = "xx + 188",
year = "2008",
ISBN = "0-387-75966-2 (paperback)",
ISBN-13 = "978-0-387-75966-1 (paperback)",
LCCN = "QA280 .P45 2008",
bibdate = "Thu Jul 10 08:36:02 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Use R!",
URL = "http://www.loc.gov/catdir/toc/fy0906/2008930126.html",
acknowledgement = ack-nhfb,
subject = "Time-series analysis; Computer programs; R (Computer
program language)",
}
@Article{Pfaff:2008:VSS,
author = "Bernhard Pfaff",
title = "{VAR}, {SVAR} and {SVEC} Models: Implementation Within
{R} Package {\tt vars}",
journal = j-J-STAT-SOFT,
volume = "27",
number = "4",
pages = "??--??",
month = jul,
year = "2008",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:40 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v27/i04",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-05-07; Accepted 2008-02-19",
}
@Article{Pineda-Krch:2008:GIG,
author = "Mario Pineda-Krch",
title = "{{\tt GillespieSSA}}: Implementing the {Gillespie}
Stochastic Simulation Algorithm in {R}",
journal = j-J-STAT-SOFT,
volume = "25",
number = "12",
pages = "1--18",
month = apr,
year = "2008",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:17 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v25/i12",
abstract = "The deterministic dynamics of populations in
continuous time are traditionally described using
coupled, first-order ordinary differential equations.
While this approach is accurate for large systems, it
is often inadequate for small systems where key species
may be present in small numbers or where key reactions
occur at a low rate. The Gillespie stochastic
simulation algorithm (SSA) is a procedure for
generating time-evolution trajectories of finite
populations in continuous time and has become the
standard algorithm for these types of stochastic
models. This article presents a simple-to-use and
flexible framework for implementing the SSA using the
high-level statistical computing language R and the
package {\tt GillespieSSA}. Using three ecological
models as examples (logistic growth,
Rosenzweig-MacArthur predator-prey model, and
Kermack-McKendrick SIRS metapopulation model), this
paper shows how a deterministic model can be formulated
as a finite-population stochastic model within the
framework of SSA theory and how it can be implemented
in R. Simulations of the stochastic models are
performed using four different SSA Monte Carlo methods:
one exact method (Gillespie's direct method); and three
approximate methods (explicit, binomial, and optimized
tau-leap methods). Comparison of simulation results
confirms that while the time-evolution trajectories
obtained from the different SSA methods are
indistinguishable, the approximate methods are up to
four orders of magnitude faster than the exact
methods.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-10-19; Accepted 2008-02-01",
}
@Book{Reimann:2008:SDA,
editor = "Clemens Reimann and Peter Filzmoser and Robert Garrett
and Rudolf Dutter",
title = "Statistical data analysis explained: applied
environmental statistics with {R}",
publisher = pub-WILEY,
address = pub-WILEY:adr,
pages = "xviii + 343 + 8",
year = "2008",
ISBN = "0-470-98581-X (hardcover), 0-470-98759-6 (e-book)",
ISBN-13 = "978-0-470-98581-6 (hardcover), 978-0-470-98759-9
(e-book)",
LCCN = "GE45.S73 S8324 2008",
bibdate = "Wed Sep 15 09:41:33 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
URL = "http://www.wiley.com/WileyCDA/WileyTitle/productCd-0470987596.html",
acknowledgement = ack-nhfb,
subject = "environmental sciences; statistical methods; data
processing; R (computer programming language)",
}
@Book{Ritz:2008:NRR,
author = "Christian Ritz and Jens C. Streibig",
title = "Nonlinear regression with {R}",
publisher = pub-SV,
address = pub-SV:adr,
pages = "xi + 144",
year = "2008",
ISBN = "0-387-09615-9 (paperback), 0-387-09616-7 (e-book)",
ISBN-13 = "978-0-387-09615-5 (paperback), 978-0-387-09616-2
(e-book)",
LCCN = "QA278.2 .R577 2008",
bibdate = "Thu Jul 10 08:45:30 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Use R!",
abstract = "R is a rapidly evolving lingua franca of graphical
display and statistical analysis of experiments from
the applied sciences. Currently, R offers a wide range
of functionality for nonlinear regression analysis, but
the relevant functions, packages and documentation are
scattered across the R environment. This book provides
a coherent and unified treatment of nonlinear
regression with R by means of examples from a diversity
of applied sciences such as biology, chemistry,
engineering, medicine and toxicology. R.",
acknowledgement = ack-nhfb,
subject = "Regression analysis; Data processing; Nonlinear
theories; R (Computer program language); Nonlinear
theories; Data processing",
tableofcontents = "Introduction \\
Getting started \\
Starting values and self starters \\
More nls() \\
Model diagnostics \\
Remedies for model variations \\
Uncertainty, hypothesis testing and model selection \\
Grouped data \\
Appendix A: Datasets and models \\
Appendix B: Self starter functions \\
Appendix C: Packages and functions \\
References \\
Index",
}
@Book{Rizzo:2008:SCR,
author = "Maria L. Rizzo",
title = "Statistical computing with {R}",
publisher = pub-CHAPMAN-HALL-CRC,
address = pub-CHAPMAN-HALL-CRC:adr,
pages = "xvi + 399",
year = "2008",
ISBN = "1-58488-545-9",
ISBN-13 = "978-1-58488-545-0",
LCCN = "QA276.45.R3 R59 2008",
bibdate = "Sat Jun 13 10:38:32 MDT 2009",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Chapman and Hall/CRC computer science and data
analysis series",
URL = "http://www.loc.gov/catdir/enhancements/fy0740/2007034218-d.html",
acknowledgement = ack-nhfb,
subject = "Mathematical statistics; Data processing; Statistics;
R (Computer program language)",
}
@Article{Robinson:2008:RB,
author = "Timothy J. Robinson",
title = "The {R} Book",
journal = j-AMER-STAT,
volume = "62",
number = "3",
pages = "272--273",
month = aug,
year = "2008",
CODEN = "ASTAAJ",
DOI = "http://pubs.amstat.org/doi/pdfplus/10.1198/tas.2008.s263",
ISSN = "0003-1305 (print), 1537-2731 (electronic)",
ISSN-L = "0003-1305",
bibdate = "Thu Aug 26 21:48:27 MDT 2010",
bibsource = "http://www.amstat.org/publications/tas/;
http://www.math.utah.edu/pub/tex/bib/amstat2000.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
fjournal = "The American Statistician",
journal-URL = "http://www.tandfonline.com/loi/utas20",
}
@Article{Rosenfeld:2008:ABG,
author = "Simon Rosenfeld",
title = "Approximate bivariate gamma generator with
prespecified correlation and different marginal
shapes",
journal = j-TOMACS,
volume = "18",
number = "4",
pages = "16:1--16:??",
month = sep,
year = "2008",
CODEN = "ATMCEZ",
DOI = "http://doi.acm.org/10.1145/1391978.1391982",
ISSN = "1049-3301 (print), 1558-1195 (electronic)",
ISSN-L = "1049-3301",
bibdate = "Mon Sep 29 16:00:42 MDT 2008",
bibsource = "http://www.acm.org/pubs/contents/journals/tomacs/;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/tomacs.bib",
abstract = "A new algorithm is proposed for generating approximate
bivariate gamma random samples with a prespecified
correlation coefficient and different marginal shapes.
A distinctive feature of this approach is computational
simplicity and ease of control. Extensive testing
demonstrates high accuracy of the proposed algorithm.
An S-PLUS code implementing the algorithm is provided.
Regression lines produced by the technique are nearly
linear, even when marginal shapes are drastically
different. This feature makes the approach especially
useful in simulation studies associated with linear
regression problems. A real-life example of application
to the analysis of heteroscedastic regression models is
presented. This analysis is a part of a bigger study
aimed at quantification of risk factors in cancer
research. Two-dimensional probabilistic patterns
produced by the algorithm are compared to those
generated by the well-known technique by Schmeiser and
Lal [1982].",
acknowledgement = ack-nhfb,
articleno = "16",
fjournal = "ACM Transactions on Modeling and Computer Simulation",
journal-URL = "http://portal.acm.org/browse_dl.cfm?&idx=J781",
keywords = "bivariate gamma distribution; correlation coefficient;
dietary assessment; random sampling",
}
@Book{Sarkar:2008:LMD,
author = "Deepayan Sarkar",
title = "Lattice: multivariate data visualization with {R}",
publisher = pub-SV,
address = pub-SV:adr,
pages = "xvii + 265",
year = "2008",
ISBN = "0-387-75968-9 (paperback), 0-387-75969-7 (e-book)",
ISBN-13 = "978-0-387-75968-5 (paperback), 978-0-387-75969-2
(e-book)",
LCCN = "QA171.5 .S275 2008",
bibdate = "Sat Jun 13 09:37:23 MDT 2009",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Use R!",
URL = "http://www.loc.gov/catdir/toc/fy0805/2008920682.html",
acknowledgement = ack-nhfb,
remark = "Lattice is a package for R/",
subject = "lattice theory; R (Computer programming language);
computer graphics; Trellis graphics",
}
@Article{Smith:2008:UGM,
author = "Brian J. Smith and Jun Yan and Mary Kathryn Cowles",
title = "Unified Geostatistical Modeling for Data Fusion and
Spatial Heteroskedasticity with {R} Package {\tt
ramps}",
journal = j-J-STAT-SOFT,
volume = "25",
number = "10",
pages = "1--21",
month = apr,
year = "2008",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:17 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v25/i10",
abstract = "This article illustrates usage of the {\tt ramps} R
package, which implements the reparameterized and
marginalized posterior sampling (RAMPS) algorithm for
complex Bayesian geostatistical models. The RAMPS
methodology allows joint modeling of areal and
point-source data arising from the same underlying
spatial process. A reparametrization of variance
parameters facilitates slice sampling based on
simplexes, which can be useful in general when multiple
variances are present. Prediction at arbitrary points
can be made, which is critical in applications where
maps are needed. Our implementation takes advantage of
sparse matrix operations in the Matrix package and can
provide substantial savings in computing time for large
datasets. A user-friendly interface, similar to the
{\tt nlme} mixed effects models package, enables users
to analyze datasets with little programming effort.
Support is provided for numerous spatial and
spatiotemporal correlation structures, user-defined
correlation structures, and non-spatial random effects.
The package features are illustrated via a synthetic
dataset of spatially correlated observation distributed
across the state of Iowa, USA.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-12-17; Accepted 2008-03-26",
}
@Book{Spector:2008:DMR,
author = "Phil Spector",
title = "Data Manipulation With {R}",
publisher = pub-SV,
address = pub-SV:adr,
pages = "ix + 152",
year = "2008",
ISBN = "0-387-74730-3",
ISBN-13 = "978-0-387-74730-9",
LCCN = "QA276.45.R3.S64; QA276.45.R3.S64 2008",
bibdate = "Sat Jun 13 09:48:10 MDT 2009",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
library.mit.edu:9909/mit01",
series = "Use R!",
acknowledgement = ack-nhfb,
remark = "1. Data in R \\
2. Reading and Writing Data \\
3. R and Databases \\
4. Dates \\
5. Factors \\
6. Subscripting \\
7. Character Manipulation \\
8. Data Aggregation \\
9. Reshaping Data",
subject = "Mathematical statistics; Data processing; Statistics;
R (Computer programming language)",
}
@Book{Ugarte:2008:PSR,
author = "Mar{\'\i}a Dolores Ugarte and Ana F. Militino and Alan
T. Arnholt",
title = "Probability and statistics with {R}",
publisher = pub-CRC,
address = pub-CRC:adr,
pages = "xxvi + 700",
year = "2008",
ISBN = "1-58488-891-1",
ISBN-13 = "978-1-58488-891-8",
LCCN = "QA273.19.E4 U53 2008",
bibdate = "Sat Jun 13 10:38:52 MDT 2009",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
URL = "http://www.crcpress.com/product/isbn/9781584888918",
acknowledgement = ack-nhfb,
remark = "A Chapman and Hall book.",
subject = "probabilities; data processing; statistics; R
(computer programming language)",
tableofcontents = "A Brief Introduction to S \\
The Basics of S \\
Using S \\
Data Sets \\
Data Manipulation \\
Probability Functions \\
Creating Functions \\
Programming Statements \\
Graphs \\
Exploring Data \\
What Is Statistics? \\
Data \\
Displaying Qualitative Data \\
Displaying Quantitative Data \\
Summary Measures of Location \\
Summary Measures of Spread \\
Bivariate Data \\
Multivariate Data (Lattice and Trellis Graphs) \\
General Probability and Random Variables \\
Introduction \\
Counting Rules \\
Probability \\
Random Variables \\
Univariate Probability Distributions \\
Introduction \\
Discrete Univariate Distributions \\
Continuous Univariate Distributions \\
Multivariate Probability Distributions \\
Joint Distribution of Two Random Variables \\
Independent Random Variables \\
Several Random Variables \\
Conditional Distributions \\
Expected Values, Covariance, and Correlation \\
Multinomial Distribution \\
Bivariate Normal Distribution \\
Sampling and Sampling Distributions \\
Sampling \\
Parameters \\
Estimators \\
Sampling Distribution of the Sample Mean \\
Sampling Distribution for a Statistic from an Infinite
Population \\
Sampling Distributions Associated with the Normal
Distribution \\
Point Estimation \\
Introduction \\
Properties of Point Estimators \\
Point Estimation Techniques \\
Confidence Intervals \\
Introduction \\
Confidence Intervals for Population Means \\
Confidence Intervals for Population Variances \\
Confidence Intervals Based on Large Samples \\
Hypothesis Testing \\
Introduction \\
Type I and Type II Errors \\
Power Function \\
Uniformly Most Powerful Test \\
-Value or Critical Level \\
Tests of Significance \\
Hypothesis Tests for Population Means \\
Hypothesis Tests for Population Variances \\
Hypothesis Tests for Population Proportions \\
Nonparametric Methods \\
Introduction \\
Sign Test \\
Wilcoxon Signed-Rank Test \\
The Wilcoxon Rank-Sum or the Mann Whitney U-Test \\
The Kruskal Wallis Test \\
Friedman Test for Randomized Block Designs \\
Goodness-of-Fit Tests \\
Categorical Data Analysis \\
Nonparametric Bootstrapping \\
Permutation Tests \\
Experimental Design \\
Introduction \\
Fixed-Effects Model \\
Analysis of Variance (ANOVA) for the One-Way
Fixed-Effects Model \\
Power and the Noncentral F Distribution \\
Checking Assumptions \\
Fixing Problems \\
Multiple Comparisons of Means \\
Other Comparisons among the Means \\
Summary of Comparisons of Means \\
Random-Effects Model (Variance Components Model) \\
Randomized Complete Block Design \\
Two-Factor Factorial Design \\
Regression \\
Introduction \\
Simple Linear Regression \\
Multiple Linear Regression \\
Ordinary Least Squares \\
Properties of the Fitted Regression Line \\
Using Matrix Notation with Ordinary Least Squares \\
The Method of Maximum Likelihood \\
The Sampling Distribution of \\
ANOVA Approach to Regression \\
General Linear Hypothesis \\
Model Selection and Validation \\
Interpreting a Logarithmically Transformed Model \\
Qualitative Predictors \\
Estimation of the Mean Response for New Values Xh \\
Prediction and Sampling Distribution of New
Observations Yh(new) \\
Simultaneous Confidence Intervals \\
Appendix A: S Commands \\
Appendix B: Quadratic Forms and Random Vectors and
Matrices \\
Quadratic Forms \\
Random Vectors and Matrices \\
Variance of Random Vectors \\
References \\
Index",
}
@Book{Vinod:2008:HIE,
author = "Hrishikesh D. Vinod",
title = "Hands-on intermediate econometrics using {R}:
templates for extending dozens of practical examples",
publisher = pub-WORLD-SCI,
address = pub-WORLD-SCI:adr,
pages = "xxvii + 512",
year = "2008",
ISBN = "981-281-885-5, 981-4350-41-9",
ISBN-13 = "978-981-281-885-0, 978-981-4350-41-9",
LCCN = "HB141 .V56 2008",
bibdate = "Thu Jul 10 09:55:20 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
abstract = "This book explains how to use R software to teach
econometrics by providing interesting examples, using
actual data applied to important policy issues. It
helps readers choose the best method from a wide array
of tools and packages available. The data used in the
examples along with R program snippets, illustrate the
economic theory and sophisticated statistical methods
extending the usual regression. The R program snippets
are not merely given as black boxes, but include
detailed comments which help the reader better
understand the software steps and use them as templates
for possible extension and modification.",
acknowledgement = ack-nhfb,
author-dates = "1939--",
subject = "Econometrics; Computer programs; R (Computer program
language); {\"O}konometrie.; R (Programm);
{\"O}konometrie.; {\"O}konometrie; R (Programm);
{\"O}konometrie.; Computer programs.; R (Computer
program language)",
tableofcontents = "Production Function and Regression Methods Using R
\\
Univariate Time Series Analysis with R \\
Bivariate Time Series Analysis Including Stochastic
Diffusion and Cointegration \\
Utility Theory and Empirical Implications \\
Vector Models for Multivariate Problems \\
Simultaneous Equation Models \\
Limited Dependent Variable (GLM) Models \\
Dynamic Optimization and Empirical Analysis of Consumer
Behavior \\
Single, Double and Maximum Entropy Bootstrap and
Inference \\
Generalized Least Squares, VARMA, and Estimating
Functions \\
Box--Cox, Loess and Projection Pursuit Regression \\
Appendix",
}
@Article{Wallstrom:2008:IBA,
author = "Garrick Wallstrom and Jeffrey Liebner and Robert E.
Kass",
title = "An Implementation of {Bayesian} Adaptive Regression
Splines ({BARS}) in {C} with {S} and {R} Wrappers",
journal = j-J-STAT-SOFT,
volume = "26",
number = "1",
pages = "1--21",
month = jun,
year = "2008",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:17 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v26/i01",
abstract = ">BARS (DiMatteo, Genovese, and Kass 2001) uses the
powerful reversible-jump MCMC engine to perform
spline-based generalized nonparametric regression. It
has been shown to work well in terms of having small
mean-squared error in many examples (smaller than known
competitors), as well as producing visually-appealing
fits that are smooth (filtering out high-frequency
noise) while adapting to sudden changes (retaining
high-frequency signal). However, BARS is
computationally intensive. The original implementation
in {\tt S} was too slow to be practical in certain
situations, and was found to handle some data sets
incorrectly. We have implemented BARS in {\tt C} for
the normal and Poisson cases, the latter being
important in neurophysiological and other point-process
applications. The {\tt C} implementation includes all
needed subroutines for fitting Poisson regression,
manipulating B-splines (using code created by Bates and
Venables), and finding starting values for Poisson
regression (using code for density estimation created
by Kooperberg). The code utilizes only freely-available
external libraries ({\bf LAPACK} and {\bf BLAS}) and is
otherwise self-contained. We have also provided
wrappers so that BARS can be used easily within {\tt S}
or {\tt R}.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2004-06-25; Accepted 2007-02-20",
}
@Article{Wickham:2008:BRBa,
author = "Hadley Wickham",
title = "Book Review: {{\booktitle{Data Manipulation with
R}}}",
journal = j-J-STAT-SOFT,
volume = "26",
number = "BR-1",
pages = "1--2",
month = jun,
year = "2008",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri Jul 4 10:54:17 MDT 2008",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v26/b01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-06-16; Accepted 2008-06-16",
}
@Article{Wickham:2008:BRBb,
author = "Hadley Wickham",
title = "Book Review: {{\booktitle{A First Course in
Statistical Programming with R}}}",
journal = j-J-STAT-SOFT,
volume = "28",
number = "BR-3",
pages = "??--??",
month = dec,
year = "2008",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v28/b03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-12-09; Accepted 2008-12-09",
}
@Article{Zeileis:2008:RMC,
author = "Achim Zeileis and Christian Kleiber and Simon
Jackman",
title = "Regression Models for Count Data in {R}",
journal = j-J-STAT-SOFT,
volume = "27",
number = "8",
pages = "??--??",
month = jul,
year = "2008",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:40 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v27/i08",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-05-04; Accepted 2008-06-06",
}
@Book{Aitkin:2009:SMR,
author = "Murray A. Aitkin and Brian Francis and John Hinde and
Ross Darnell",
title = "Statistical modelling in {R}",
volume = "35",
publisher = pub-OXFORD,
address = pub-OXFORD:adr,
pages = "xii + 576",
year = "2009",
ISBN = "0-19-921913-3 (paperback), 0-19-921914-1 (hardcover)",
ISBN-13 = "978-0-19-921913-1 (paperback), 978-0-19-921914-8
(hardcover)",
LCCN = "QA276.45.R3 S73 2009",
bibdate = "Thu Apr 24 08:32:18 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Oxford statistical science series",
URL = "http://www.loc.gov/catdir/toc/ecip0824/2008031898.html",
acknowledgement = ack-nhfb,
subject = "R (Computer program language); Mathematical
statistics; Data processing",
tableofcontents = "Introducing R: Statistical packages and statistical
modelling \\
Getting started in R \\
Reading data into R \\
Assignment and data generation \\
Displaying data \\
Data structures and the workspace \\
Transformations and data modification \\
Functions and suffixing \\
Structure functions \\
Mathematical functions \\
Logical operators \\
Control functions \\
Statistical functions \\
Random numbers \\
Suffixes in expressions \\
Extracting subsets of data \\
Recoding variates and factors into new factors \\
Graphical facilities \\
Text functions \\
Writing your own functions \\
Sorting and tabulation \\
Editing R code \\
Installing and using packages \\
Statistical Modelling and Inference: Statistical models
\\
Types of variables \\
Population models \\
Random sampling \\
The likelihood function \\
Inference for single parameter models \\
Comparing two simple hypotheses \\
Information about a single parameter \\
Comparing a simple null hypothesis and a composite
alternative \\
Inference with nuisance parameters \\
Profile likelihoods \\
Marginal likelihood for the variance \\
Likelihood normalizing transformations \\
Alternative test procedures \\
Bayes inference \\
Binomial model \\
Hypergeometric sampling from finite populations \\
The effect of the sample design on inference \\
The exponential family \\
Mean and variance \\
Generalized linear models \\
Maximum likelihood fitting of the GLM \\
Model comparisons through maximized likelihoods \\
Likelihood inference without models \\
Likelihoods for percentiles \\
Empirical likelihood \\
Regression and Analysis of Variance: An example \\
Strategies for model simplification \\
Stratified, weighted and clustered samples \\
Model criticism \\
Mis-specification of the probability distribution \\
Mis-specification of the link function \\
The occurrence of aberrant and influential observations
\\
Mis-specification of the systematic part of the model
\\
The Box-Cox transformation family \\
Modelling and background information \\
Link functions and transformations \\
Regression models for prediction \\
Model choice and mean square prediction error \\
Model selection through cross-validation \\
Reduction of complex regression models \\
Sensitivity of the Box-Cox transformation \\
The use of regression models for calibration \\
Measurement error in the explanatory variables \\
Factorial designs \\
Unbalanced cross-classifications \\
The Bennett hostility data \\
ANOVA of the cross-classification \\
Regression analysis of the cross-classification \\
Statistical package treatments of cross-classifications
\\
Missing data \\
Approximate methods for missing data \\
Modelling of variance heterogeneity \\
Poison example \\
Tree example \\
Binary Response Data: Binary responses \\
Transformations and link functions \\
Profile likelihoods for functions of parameters \\
Model criticism \\
Mis-specification of the probability distribution \\
Mis-specification of the link function \\
The occurrence of aberrant and influential observations
\\
Binary data with continuous covariates \\
Contingency table construction from binary data \\
The prediction of binary outcomes \\
Profile and conditional likelihoods in 2 x 2 tables \\
Three-dimensional contingency tables with a binary
response \\
Prenatal care and infant mortality \\
Coronary heart disease \\
Multidimensional contingency tables with a binary
response \\
Multinomial and Poisson Response Data: The Poisson
distribution \\
Cross-classified counts \\
Multicategory responses \\
Multinomial logit model \\
The Poisson-multinomial relation \\
Fitting the multinomial logit model \\
Ordered response categories \\
Common slopes for the regressions \\
Linear trend over response categories \\
Proportional slopes \\
The continuation ratio model \\
Other models \\
An Example \\
Multinomial logit model \\
Continuation ratio model \\
Structured multinomial responses \\
Independent outcomes \\
Correlated outcomes \\
Survival Data: Introduction \\
The exponential distribution \\
Fitting the exponential distribution \\
Model criticism \\
Comparison with the normal family \\
Censoring \\
Likelihood function for censored observations \\
Probability plotting with censored data: the
Kaplan-Meier estimator \\
The gamma distribution \\
Maximum likelihood with uncensored data \\
Maximum likelihood with censored data \\
Double modelling \\
The Weibull distribution \\
Maximum likelihood fitting of the Weibull distribution
\\
The extreme value distribution \\
The reversed extreme value distribution \\
Survivor function plotting for the Weibull and extreme
value distributions \\
The Cox proportional hazards model and the piecewise
exponential distribution \\
Maximum likelihood fitting of the piecewise exponential
distribution \\
Examples \\
The logistic and log-logistic distributions \\
The normal and lognormal distributions \\
Evaluating the proportional hazard assumption \\
Competing risks \\
Time-dependent explanatory variables \\
Discrete time models \\
Finite Mixture Models: Introduction \\
Example \\
girl birthweights \\
Finite mixtures of distributions \\
Maximum likelihood in finite mixtures \\
Standard errors \\
Testing for the number of components \\
Example \\
Likelihood 'spikes' \\
Galaxy data \\
Kernel density estimates \\
Random Effect Models: Overdispersion \\
Testing for overdispersion \\
Conjugate random effects \\
Normal kernel: the t-distribution \\
Poisson kernel: the negative binomial distribution \\
Binomial kernel: beta-binomial distribution \\
Gamma kernel \\
Difficulties with the conjugate approach \\
Normal random effects \\
Predicting from the normal random effect model \\
Gaussian quadrature examples \\
Overdispersion model fitting \\
Poisson \\
the fabric fault data \\
Binomial \\
the toxoplasmosis data \\
Other specified random effect distributions \\
Arbitrary random effects \\
Examples \\
The fabric fault data \\
The toxoplasmosis data \\
Leukaemia remission data \\
The Brownlee stack-loss data \\
Random coefficient regression models \\
Example \\
the fabric fault data \\
Algorithms for mixture fitting \\
The trypanosome data \\
Modelling the mixing probabilities \\
Mixtures of mixtures \\
Variance Component Models: Models with shared random
effects \\
The normal/normal model \\
Exponential family two-level models \\
Other approaches \\
NPML estimation of the masses and mass-points \\
Random coefficient models \\
Variance component model fitting \\
Children's height development \\
Multi-centre trial of beta-blockers \\
Longitudinal study of obesity \\
Autoregressive random effect models \\
Latent variable models \\
The normal factor model \\
IRT models \\
The Rasch model \\
The two-parameter model \\
The three-parameter logit (3PL) model \\
Example \\
The Law School Aptitude Test (LSAT) \\
Spatial dependence \\
Multivariate correlated responses \\
Discreteness of the NPML estimate",
}
@Book{Albert:2009:BCR,
author = "Jim Albert",
title = "{Bayesian} computation with {R}",
publisher = pub-SV,
address = pub-SV:adr,
edition = "Second",
pages = "300 (est.)",
year = "2009",
ISBN = "0-387-92297-0",
ISBN-13 = "978-0-387-92297-3",
LCCN = "????",
bibdate = "Sat Jun 13 09:47:24 MDT 2009",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.bibsys.no:2100/BIBSYS",
series = "Use R",
acknowledgement = ack-nhfb,
author-dates = "1953--",
}
@Article{Anonymous:2009:BRBf,
author = "Anonymous",
title = "Book Review: {{\booktitle{Introductory Statistics With
R}} (2nd ed.) by Peter Dalgaard}",
journal = j-TECHNOMETRICS,
volume = "51",
number = "2",
pages = "225--225",
month = may,
year = "2009",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/40586615",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:21:29 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i40025248;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics2000.bib",
URL = "http://www.jstor.org/stable/40586615",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Article{Ardia:2009:AMS,
author = "David Ardia and Lennart F. Hoogerheide and Herman K.
van Dijk",
title = "Adaptive Mixture of {Student-$t$} Distributions as a
Flexible Candidate Distribution for Efficient
Simulation: The {R} Package {{\tt AdMit}}",
journal = j-J-STAT-SOFT,
volume = "29",
number = "3",
pages = "??--??",
month = jan,
year = "2009",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v29/i03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-06-30; Accepted 2008-12-01",
}
@Book{Basso:2009:PTS,
author = "Dario Basso and Fortunato Pesarin and Luigi Salmaso
and Aldo Solari",
title = "Permutation tests for stochastic ordering and {ANOVA}:
theory and applications with {R}",
volume = "194",
publisher = pub-SV,
address = pub-SV:adr,
pages = "xiii + 217",
year = "2009",
ISBN = "0-387-85955-1 (paperback), 0-387-85956-X (e-book)",
ISBN-13 = "978-0-387-85955-2 (paperback), 978-0-387-85956-9
(e-book)",
LCCN = "QA165 .P437 2009",
bibdate = "Thu Jul 10 09:48:10 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Lecture notes in statistics",
abstract = "Permutation testing for multivariate stochastic
ordering and ANOVA designs is a fundamental issue in
many scientific fields such as medicine, biology,
pharmaceutical studies, engineering, economics,
psychology, and social sciences. This book presents new
advanced methods and related R codes to perform complex
multivariate analyses. The prerequisites are a standard
course in statistics and some background in
multivariate analysis and R software. Dario Basso is a
Post Doctoral Fellow at the Department of Management
and Engineering of University of Padova His main
research interests include permutation tests and design
of experiments. Fortunato Pesarin is Full Professor of
Statistics at the Department of Statistics of the
University of Padova. His main research interests
include nonparametric methods, bootstrap methods, and
permutation tests. He has?published a leading book on
multivariate permutation tests based on nonparametric
combination methodology. Luigi Salmaso is Associate
Professor of Statistics at the Department of Management
and Engineering of the University of Padova. His main
research interests include permutation methods,
multiple tests, and design of experiments. He has
published more than 70 papers on permutation methods
and design of experiments in international
peer-reviewed journals. Aldo Solari is a Post Doctoral
Fellow at the Department of Chemical Process
Engineering of the University of Padova. His main
research interest is resampling-based multiple testing
methods.",
acknowledgement = ack-nhfb,
subject = "Permutations; Stochastic orders; Analysis of variance;
R (Computer program language)",
tableofcontents = "Permutation tests \\
Ordinal data \\
Multivariate ordinal data \\
Multivariate continuous data \\
Non-parametric one-way ANOVA \\
Synchronized permutation tests in two-way ANOVA \\
Permutation tests for unreplicated factorial designs",
}
@Article{Benaglia:2009:MRP,
author = "Tatiana Benaglia and Didier Chauveau and David R.
Hunter and Derek S. Young",
title = "{\tt mixtools}: An {R} Package for Analyzing Mixture
Models",
journal = j-J-STAT-SOFT,
volume = "32",
number = "6",
pages = "??--??",
month = oct,
year = "2009",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v32/i06",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-04-28; Accepted 2009-08-18",
}
@Article{Bornkamp:2009:MRP,
author = "Bj{\"o}rn Bornkamp and Jos{\'e} Pinheiro and Frank
Bretz",
title = "{{\tt MCPMod}}: An {R} Package for the Design and
Analysis of Dose-Finding Studies",
journal = j-J-STAT-SOFT,
volume = "29",
number = "7",
pages = "??--??",
month = feb,
year = "2009",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v29/i07",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-05-15; Accepted 2009-01-22",
}
@Article{Bowman:2009:BRB,
author = "Adrian Bowman",
title = "Book Review: {{\booktitle{Morphometrics with R}}}",
journal = j-J-STAT-SOFT,
volume = "31",
number = "BR-1",
pages = "??--??",
month = sep,
year = "2009",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v31/b01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-09-19; Accepted 2009-09-19",
}
@Article{Burr:2009:BRBa,
author = "Thomas L. Burr",
title = "Book Review: {{\booktitle{Simulation and Inference for
Stochastic Differential Equations With R Examples}} by
Stefano Iacus}",
journal = j-TECHNOMETRICS,
volume = "51",
number = "3",
pages = "340--341",
month = aug,
year = "2009",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/40586630",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:21:30 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i40025249;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics2000.bib",
URL = "http://www.jstor.org/stable/40586630",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Article{Christ:2009:BRB,
author = "Aaron Christ",
title = "Book Review: {{\booktitle{Mixed Effects Models and
Extensions in Ecology with R}}}",
journal = j-J-STAT-SOFT,
volume = "32",
number = "BR-1",
pages = "??--??",
month = nov,
year = "2009",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v32/b01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-11-08; Accepted 2009-11-08",
}
@Book{Clarke:2009:PTD,
author = "Bertrand Salem Clarke and Ernest Fokou{\'e} and Hao
Helen Zhang",
title = "Principles and Theory for Data Mining and Machine
Learning",
volume = "??",
publisher = pub-SV,
address = pub-SV:adr,
pages = "xv + 781",
year = "2009",
CODEN = "????",
DOI = "http://dx.doi.org/10.1007/978-0-387-98135-2",
ISBN = "0-387-98134-9, 0-387-98135-7 (e-book)",
ISBN-13 = "978-0-387-98134-5, 978-0-387-98135-2 (e-book)",
ISSN = "0172-7397",
ISSN-L = "0172-7397",
LCCN = "QA76.9.D343 C53 2009",
bibdate = "Thu Jun 19 06:41:21 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/probstat2000.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
series = "Springer Series in Statistics",
URL = "http://link.springer.com/book/10.1007/978-0-387-98135-2",
abstract = "This book is a thorough introduction to the most
important topics in data mining and machine learning.
It begins with a detailed review of classical function
estimation and proceeds with chapters on nonlinear
regression, classification, and ensemble methods. The
final chapters focus on clustering, dimension
reduction, variable selection, and multiple
comparisons. All these topics have undergone
extraordinarily rapid development in recent years and
this treatment offers a modern perspective emphasizing
the most recent contributions. The presentation of
foundational results is detailed and includes many
accessible proofs not readily available outside
original sources. While the orientation is conceptual
and theoretical, the main points are regularly
reinforced by computational comparisons. Intended
primarily as a graduate level textbook for statistics,
computer science, and electrical engineering students,
this book assumes only a strong foundation in
undergraduate statistics and mathematics, and facility
with using R packages. The text has a wide variety of
problems, many of an exploratory nature. There are
numerous computed examples, complete with code, so that
further computations can be carried out readily. The
book also serves as a handbook for researchers who want
a conceptual overview of the central topics in data
mining and machine learning. Bertrand Clarke is a
Professor of Statistics in the Department of Medicine,
Department of Epidemiology and Public Health, and the
Center for Computational Sciences at the University of
Miami. He has been on the Editorial Board of the
Journal of the American Statistical Association, the
Journal of Statistical Planning and Inference, and
Statistical Papers. He is co-winner, with Andrew
Barron, of the 1990 Browder J. Thompson Prize from the
Institute of Electrical and Electronic Engineers.
Ernest Fokoue is an Assistant Professor of Statistics
at Kettering University. He has also taught at Ohio
State University and been a long term visitor at the
Statistical and Mathematical Sciences Institute where
he was a Post-doctoral Research Fellow in the Data
Mining and Machine Learning Program. In 2000, he was
the winner of the Young Researcher Award from the
International Association for Statistical Computing.
Hao Helen Zhang is an Associate Professor of Statistics
in the Department of Statistics at North Carolina State
University. For 2003-2004, she was a Research Fellow at
SAMSI and in 2007, she won a Faculty Early Career
Development Award from the National Science Foundation.
She is on the Editorial Board of the Journal of the
American Statistical Association and Biometrics.",
acknowledgement = ack-nhfb,
remark = "Most volumes in this series are unnumbered.",
series-URL = "http://link.springer.com/bookseries/692",
subject = "Data mining; Machine learning; Artificial
Intelligence; Data mining; Machine learning.",
tableofcontents = "Variability, information, prediction \\
Kernel smoothing \\
Spline smoothing \\
New wave nonparametrics \\
Supervised learning: Partition methods \\
Alternative nonparametrics \\
Computational comparisons \\
Unsupervised learning: Clustering \\
Learning in high dimensions \\
Variable selection \\
Multiple testing",
}
@Book{Cowpertwait:2009:ITS,
author = "Paul S. P. Cowpertwait and Andrew V. Metcalfe",
title = "Introductory time series with {R}",
publisher = pub-SV,
address = pub-SV:adr,
pages = "xv + 254",
year = "2009",
ISBN = "0-387-88697-4",
ISBN-13 = "978-0-387-88697-8",
LCCN = "QA280 .C69 2009",
bibdate = "Tue Sep 6 08:09:31 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Use R!",
URL = "http://www.loc.gov/catdir/enhancements/fy1002/2009928496-d.htm;
http://www.loc.gov/catdir/enhancements/fy1002/2009928496-t.htm",
acknowledgement = ack-nhfb,
subject = "time-series analysis; R (computer program language)",
}
@Article{Cule:2009:LRP,
author = "Madeleine Cule and Robert B. Gramacy and Richard
Samworth",
title = "{{\tt LogConcDEAD}}: An {R} Package for Maximum
Likelihood Estimation of a Multivariate Log-Concave
Density",
journal = j-J-STAT-SOFT,
volume = "29",
number = "2",
pages = "??--??",
month = jan,
year = "2009",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v29/i02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-07-07; Accepted 2008-12-14",
}
@Article{Dahl:2009:RAR,
author = "David B. Dahl and Scott Crawford",
title = "{{\tt RinRuby}}: Accessing the {R} Interpreter from
Pure {Ruby}",
journal = j-J-STAT-SOFT,
volume = "29",
number = "4",
pages = "??--??",
month = jan,
year = "2009",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v29/i04",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-07-03; Accepted 2008-11-26",
}
@Article{deLeeuw:2009:BRBa,
author = "Jan de Leeuw",
title = "Book Review: {{\booktitle{Nonlinear Regression with
R}}}",
journal = j-J-STAT-SOFT,
volume = "29",
number = "BR-6",
pages = "??--??",
month = jan,
year = "2009",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v29/b06",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-01-04; Accepted 2009-01-04",
}
@Article{deLeeuw:2009:BRBb,
author = "Jan de Leeuw",
title = "Book Review: {{\booktitle{Statistical Methods for
Environmental Epidemiology with R}}}",
journal = j-J-STAT-SOFT,
volume = "29",
number = "BR-7",
pages = "??--??",
month = jan,
year = "2009",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v29/b07",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-01-05; Accepted 2009-01-05",
}
@Article{deLeeuw:2009:BRBc,
author = "Jan de Leeuw",
title = "Book Review: {{\booktitle{R Programming for
Bioinformatics}}}",
journal = j-J-STAT-SOFT,
volume = "29",
number = "BR-8",
pages = "??--??",
month = jan,
year = "2009",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v29/b08",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-01-10; Accepted 2009-01-10",
}
@Article{deLeeuw:2009:GMO,
author = "Jan de Leeuw and Patrick Mair",
title = "{Gifi} Methods for Optimal Scaling in {R}: The Package
{\tt homals}",
journal = j-J-STAT-SOFT,
volume = "31",
number = "4",
pages = "??--??",
month = aug,
year = "2009",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v31/i04",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-11-06; Accepted 2009-07-23",
}
@Article{deLeeuw:2009:IOR,
author = "Jan de Leeuw and Kurt Hornik and Patrick Mair",
title = "Isotone Optimization in {R}: Pool-Adjacent-Violators
Algorithm ({PAVA}) and Active Set Methods",
journal = j-J-STAT-SOFT,
volume = "32",
number = "5",
pages = "??--??",
month = oct,
year = "2009",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v32/i05",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-03-27; Accepted 2009-09-30",
}
@Article{deLeeuw:2009:MSU,
author = "Jan de Leeuw and Patrick Mair",
title = "Multidimensional Scaling Using Majorization: {SMACOF}
in {R}",
journal = j-J-STAT-SOFT,
volume = "31",
number = "3",
pages = "??--??",
month = aug,
year = "2009",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v31/i03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-11-28; Accepted 2009-06-03",
}
@Article{deLeeuw:2009:SCC,
author = "Jan de Leeuw and Patrick Mair",
title = "Simple and Canonical Correspondence Analysis Using the
{R} Package {\tt anacor}",
journal = j-J-STAT-SOFT,
volume = "31",
number = "5",
pages = "??--??",
month = aug,
year = "2009",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v31/i05",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-11-25; Accepted 2009-06-18",
}
@Article{Deviere:2009:ALD,
author = "Elisabeth D{\'e}vi{\`e}re",
title = "Analyzing linguistic data: a practical introduction to
statistics using {R}",
journal = j-J-APPL-STAT,
volume = "36",
number = "4",
pages = "471--472",
month = apr,
year = "2009",
CODEN = "????",
ISSN = "0266-4763 (print), 1360-0532 (electronic)",
ISSN-L = "0266-4763",
bibdate = "Wed Aug 25 11:41:56 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/japplstat.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.tandf.co.uk/journals/routledge/02664763.html",
acknowledgement = ack-nhfb,
fjournal = "Journal of Applied Statistics",
journal-URL = "http://www.tandfonline.com/loi/cjas20",
}
@Article{Eddelbuettel:2009:BRBa,
author = "Dirk Eddelbuettel",
title = "Book Review: {{\booktitle{Computational Statistics: An
Introduction to R}}}",
journal = j-J-STAT-SOFT,
volume = "32",
number = "BR-2",
pages = "??--??",
month = dec,
year = "2009",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v32/b02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-12-22; Accepted 2009-12-22",
}
@Article{Eddelbuettel:2009:BRBb,
author = "Dirk Eddelbuettel",
title = "Book Review: {{\booktitle{Analysis of Integrated and
Cointegrated Time Series with R (2nd Edition)}}}",
journal = j-J-STAT-SOFT,
volume = "30",
number = "BR-5",
pages = "??--??",
month = apr,
year = "2009",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v30/b05",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-04-27; Accepted 2009-04-27",
}
@Article{Eddelbuettel:2009:BRBc,
author = "Dirk Eddelbuettel",
title = "Book Review: {{\booktitle{Applied Econometrics with
R}}}",
journal = j-J-STAT-SOFT,
volume = "29",
number = "BR-14",
pages = "??--??",
month = feb,
year = "2009",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v29/b14",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-02-25; Accepted 2009-02-25",
}
@Article{Eugster:2009:SMH,
author = "Manuel J. A. Eugster and Friedrich Leisch",
title = "From {Spider-Man} to Hero --- Archetypal Analysis in
{R}",
journal = j-J-STAT-SOFT,
volume = "30",
number = "8",
pages = "??--??",
month = apr,
year = "2009",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v30/i08",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-12-11; Accepted 2009-04-21",
}
@Book{Foulkes:2009:ASG,
author = "Andrea S. Foulkes",
title = "Applied statistical genetics with {R}: for
population-based association studies",
publisher = pub-SV,
address = pub-SV:adr,
pages = "xxiii + 252",
year = "2009",
DOI = "http://dx.doi.org/10.1007/978-0-387-89554-3",
ISBN = "0-387-89553-1",
ISBN-13 = "978-0-387-89553-6",
LCCN = "QH438.4.S73 F68 2009",
bibdate = "Thu Jul 10 09:30:31 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Use R!",
URL = "http://springerlink.com/openurl.asp?genre=book&isbn=978-0-387-89553-6;
http://www.loc.gov/catdir/enhancements/fy0913/2009284624-d.html;
http://www.loc.gov/catdir/enhancements/fy0913/2009284624-t.html",
abstract = "The vast array of molecular level information now
available presents exciting opportunities to
characterize the genetic underpinnings of complex
diseases while discovering novel biological pathways to
disease progression. In this introductory graduate
level text, Dr. Foulkes elucidates core concepts that
undergird the wide range of analytic techniques and
software tools for the analysis of data derived from
population-based genetic investigations. Applied
Statistical Genetics with R offers a clear and cogent
presentation of several fundamental statistical
approaches that researchers from multiple disciplines,
including medicine, public health, epidemiology,
statistics and computer science, will find useful in
exploring this emerging field. Couched in the language
of biostatistics, this text can be easily adopted for
public health and medical school curricula. The text
covers key genetic data concepts and statistical
principles to provide the reader with a strong
foundation in methods for candidate gene and
genome-wide association studies. These include methods
for unobservable haplotypic phase, multiple testing
adjustments, and high-dimensional data analysis.
Emphasis is on analysis of data arising from studies of
unrelated individuals and the potential interplay among
genetic factors and more traditional, epidemiological
risk factors for disease. While theoretically rigorous,
the analytic techniques are presented at a level that
will appeal to researchers and students with limited
knowledge of statistical genetics. The text assumes the
reader has completed a first course in biostatistics,
uses publicly available data sets for illustration, and
provides extensive examples using the open source,
publicly available statistical software environment
R.",
acknowledgement = ack-nhfb,
subject = "Genetics; Statistical methods; R (Computer program
language); Genetics, Population; methods; Epidemiologic
Methods; Automatic Data Processing; Models,
Statistical; Statistical methods.; R (Computer program
language)",
tableofcontents = "Genetic Association Studies \\
Overview of population-based investigations \\
Data components and terminology \\
Data examples \\
Elementary Statistical Principles \\
Background measures and tests of association \\
Analytic challenges \\
Genetic Data Concepts and Tests \\
Linkage disequilibrium (LD) \\
Hardy--Weinberg equilibrium (HWE) \\
Quality control and preprocessing \\
Multiple Comparison Procedures \\
Measures of error \\
Single-step and step-down adjustments \\
Resampling-based methods \\
Alternative paradigms \\
Methods for Unobservable Phase \\
Haplotype estimation \\
Estimating and testing for haplotype-trait association
\\
Classification and Regression Trees \\
Building a tree \\
Optimal trees \\
Additional Topics in High-Dimensional Data Analysis \\
Random forests \\
Logic regression \\
Multivariate adaptive regression splines \\
Bayesian variable selection \\
Further readings",
}
@Article{Fox:2009:EDR,
author = "John Fox and Jangman Hong",
title = "Effect Displays in {R} for Multinomial and
Proportional-Odds Logit Models: Extensions to the {\tt
effects} Package",
journal = j-J-STAT-SOFT,
volume = "32",
number = "1",
pages = "??--??",
month = oct,
year = "2009",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v32/i01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-04-17; Accepted 2009-09-22",
}
@Book{Gentleman:2009:RPB,
author = "Robert Gentleman",
title = "{R} programming for bioinformatics",
publisher = pub-CRC,
address = pub-CRC:adr,
pages = "xii + 314",
year = "2009",
ISBN = "1-4200-6367-7",
ISBN-13 = "978-1-4200-6367-7",
LCCN = "QH324.2 .G46 2009",
bibdate = "Thu Jul 10 08:49:26 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Chapman and Hall/CRC computer science and data
analysis series",
URL = "http://www.loc.gov/catdir/enhancements/fy0901/2008011352-d.html;
http://www.loc.gov/catdir/toc/fy0805/2008011352.html",
abstract = "The Bioconductor project was initiated in 2001 to
provide a resource of R packages that specifically
address bioinformatics problems. This book provides an
overview of techniques to develop R programming skills
for bioinformatics. It covers R language fundamentals,
object-oriented programming in R, and foreign language
interfaces.",
acknowledgement = ack-nhfb,
author-dates = "1959--",
subject = "Bioinformatics; R (Computer program language)",
tableofcontents = "Introducing R \\
R language fundamentals \\
Object-oriented programming in R \\
Input and output in R \\
Working with character data \\
Foreign language interfaces \\
R packages \\
Data technologies \\
Debugging and profiling",
}
@Article{Giorgino:2009:CVD,
author = "Toni Giorgino",
title = "Computing and Visualizing Dynamic Time Warping
Alignments in {R}: The {\tt dtw} Package",
journal = j-J-STAT-SOFT,
volume = "31",
number = "7",
pages = "??--??",
month = aug,
year = "2009",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v31/i07",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-09-30; Accepted 2009-06-26",
}
@Book{Giudici:2009:ADM,
author = "Paolo Giudici and Silvia Figini",
title = "Applied data mining for business and industry",
publisher = pub-WILEY,
address = pub-WILEY:adr,
edition = "Second",
pages = "viii + 249",
year = "2009",
ISBN = "0-470-05886-2 (cloth), 0-470-05887-0 (paperback),
0-470-74582-7 (e-book)",
ISBN-13 = "978-0-470-05886-2 (cloth), 978-0-470-05887-9
(paperback), 978-0-470-74582-3 (e-book)",
LCCN = "QA76.9.D343 G75 2009",
bibdate = "Wed Sep 15 09:35:49 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
URL = "http://www.wiley.com/WileyCDA/WileyTitle/productCd-0470058862.html",
acknowledgement = ack-nhfb,
subject = "data mining; business; data processing; commercial
statistics",
}
@Article{Grasman:2009:FCC,
author = "Raoul Grasman and Han L. J. van der Maas and Eric-Jan
Wagenmakers",
title = "Fitting the Cusp Catastrophe in {R}: {A} {\tt cusp}
Package Primer",
journal = j-J-STAT-SOFT,
volume = "32",
number = "8",
pages = "??--??",
month = nov,
year = "2009",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v32/i08",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-11-10; Accepted 2009-05-09",
}
@Article{Grun:2009:AGE,
author = "Bettina Gr{\"u}n and Achim Zeileis",
title = "Automatic Generation of Exams in {R}",
journal = j-J-STAT-SOFT,
volume = "29",
number = "10",
pages = "??--??",
month = feb,
year = "2009",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v29/i10",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-11-10; Accepted 2009-02-17",
}
@Book{Heiberger:2009:RTE,
author = "Richard M. Heiberger and Erich Neuwirth",
title = "{R} through {Excel}: a spreadsheet interface for
statistics, data analysis, and graphics",
publisher = pub-SV,
address = pub-SV:adr,
pages = "xxv + 342",
year = "2009",
ISBN = "1-4419-0051-9 (paperback), 1-4419-0052-7 (e-book)",
ISBN-13 = "978-1-4419-0051-7 (paperback), 978-1-4419-0052-4
(e-book)",
LCCN = "QA276.45.R3 H45 2009",
bibdate = "Thu Jul 10 09:51:31 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Use R!",
acknowledgement = ack-nhfb,
author-dates = "1945--",
subject = "Microsoft Excel (Computer file); Microsoft Excel
(Computer file); Mathematical statistics; Data
processing; Graphical modeling (Statistics); R
(Computer program language); EXCEL.; R (Programm);
EXCEL.; R (Programm); Graphical modeling (Statistics);
Data processing.; R (Computer program language)",
tableofcontents = "1. Getting started \\
2. Using RExcel and R Commander \\
3. Getting data into R \\
4. Normal and t distributions \\
5. Normal and t workbook \\
6. t-Tests \\
7. One-way ANOVA \\
8. Simple linear regression \\
9. What is least squares? \\
10. Multiple regression \\
two X-variables \\
11. Polynomial regression \\
12. Multiple regression \\
three or more X-variables \\
13. Contingency tables and the chi-square test \\
A. Installation of RExcel \\
B. Nuisances \\
installation, startup, or execution",
}
@Article{Helmreich:2009:PRP,
author = "James E. Helmreich and Robert M. Pruzek",
title = "{{\tt PSAgraphics}}: An {R} Package to Support
Propensity Score Analysis",
journal = j-J-STAT-SOFT,
volume = "29",
number = "6",
pages = "??--??",
month = feb,
year = "2009",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v29/i06",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-09-24; Accepted 2008-12-22",
}
@Book{Heritier:2009:RMB,
editor = "Stephane Heritier and others",
title = "Robust methods in biostatistics",
publisher = pub-WILEY,
address = pub-WILEY:adr,
pages = "xiv + 268",
year = "2009",
ISBN = "0-470-02726-6 (cloth), 0-470-74054-X (e-book)",
ISBN-13 = "978-0-470-02726-4 (cloth), 978-0-470-74054-5
(e-book)",
LCCN = "QH323.5 .R615 2009",
bibdate = "Wed Sep 15 09:35:27 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Wiley series in probability and statistics",
URL = "http://www.wiley.com/WileyCDA/WileyTitle/productCd-0470027266.html",
acknowledgement = ack-nhfb,
subject = "biometry; statistical methods; methods",
tableofcontents = "Key measures and results \\
Linear regression \\
Mixed linear models \\
Generalized linear models \\
Marginal longitudinal data analysis \\
Survival analysis",
}
@Article{Hlynka:2009:BRBa,
author = "Myron Hlynka",
title = "Book Review: {{\booktitle{A First Course in
Statistical Programming With R}} by W. John Braun;
Duncan J. Murdoch}",
journal = j-TECHNOMETRICS,
volume = "51",
number = "3",
pages = "340--340",
month = aug,
year = "2009",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/40586629",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:21:30 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i40025249;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics2000.bib",
URL = "http://www.jstor.org/stable/40586629",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Article{Hoffmann:2009:FMA,
author = "Thomas J. Hoffmann and Nan M. Laird",
title = "{\tt fgui}: {A} Method for Automatically Creating
Graphical User Interfaces for Command-Line {R}
Packages",
journal = j-J-STAT-SOFT,
volume = "30",
number = "2",
pages = "??--??",
month = apr,
year = "2009",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v30/i02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-10-01; Accepted 2009-03-02",
}
@Book{Horgan:2009:PRI,
author = "Jane M. Horgan",
title = "Probability with {R}: an introduction with computer
science applications",
publisher = pub-WILEY,
address = pub-WILEY:adr,
pages = "xviii + 393",
year = "2009",
ISBN = "0-470-28073-5 (cloth)",
ISBN-13 = "978-0-470-28073-7 (cloth)",
LCCN = "QA76.9.M35 H863 2009",
bibdate = "Wed Sep 15 09:37:35 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/benfords-law.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
URL = "http://www.loc.gov/catdir/toc/ecip0819/2008022817.html;
http://www.wiley.com/WileyCDA/WileyTitle/productCd-0470280735.html",
acknowledgement = ack-nhfb,
subject = "computer science; mathematics; probabilities; R
(computer programming language)",
}
@Book{Klemela:2009:SMD,
author = "Jussi Klemel{\"a}",
title = "Smoothing of multivariate data: density estimation and
visualization",
publisher = pub-WILEY,
address = pub-WILEY:adr,
pages = "xxvi + 603",
year = "2009",
ISBN = "0-470-29088-9",
ISBN-13 = "978-0-470-29088-0",
LCCN = "QA278 .K584 2009",
bibdate = "Wed Sep 15 09:37:57 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Wiley series in probability and statistics",
URL = "http://www.loc.gov/catdir/enhancements/fy1012/2008032166-b.html;
http://www.loc.gov/catdir/enhancements/fy1012/2008032166-d.html;
http://www.loc.gov/catdir/toc/ecip0824/2008032166.html;
http://www.wiley.com/WileyCDA/WileyTitle/productCd-0470290889.html",
acknowledgement = ack-nhfb,
subject = "smoothing (statistics); estimation theory; analysis of
variance",
}
@Article{laGrange:2009:BIB,
author = "Anthony la Grange and Ni{\"e}l le Roux and Sugnet
Gardner-Lubbe",
title = "{{\tt BiplotGUI}}: Interactive Biplots in {R}",
journal = j-J-STAT-SOFT,
volume = "30",
number = "12",
pages = "??--??",
month = jun,
year = "2009",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v30/i12",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-07-29; Accepted 2009-03-17",
}
@Article{Lenth:2009:RSM,
author = "Russell V. Lenth",
title = "Response-Surface Methods in {R}, Using {\tt rsm}",
journal = j-J-STAT-SOFT,
volume = "32",
number = "7",
pages = "??--??",
month = oct,
year = "2009",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v32/i07",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-03-04; Accepted 2009-10-19",
}
@Article{Luoma:2009:SBR,
author = "Arto Luoma",
title = "Short Book Review: {{\booktitle{Simulation and
Inference for Stochastic Differential Equations: With R
Examples}} by Stefano M. Iacus}",
journal = j-INT-STAT-REV,
volume = "77",
number = "1",
pages = "163--163",
month = apr,
year = "2009",
CODEN = "ISTRDP",
DOI = "http://dx.doi.org/10.2307/27919714;
http://dx.doi.org/10.1111/j.1751-5823.2009.00074_19.x",
ISSN = "0306-7734 (print), 1751-5823 (electronic)",
ISSN-L = "0306-7734",
bibdate = "Wed Jun 18 06:26:23 MDT 2014",
bibsource = "http://www.jstor.org/stable/i27919684;
http://www.math.utah.edu/pub/tex/bib/intstatrev.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstor.org/stable/27919714",
acknowledgement = ack-nhfb,
fjournal = "International Statistical Review = Revue
Internationale de Statistique",
journal-URL = "http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1751-5823;
http://www.jstor.org/journals/03067734.html",
onlinedate = "26 Mar 2009",
}
@Article{Lupi:2009:URC,
author = "Claudio Lupi",
title = "Unit Root {CADF} Testing with {R}",
journal = j-J-STAT-SOFT,
volume = "32",
number = "2",
pages = "??--??",
month = oct,
year = "2009",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v32/i02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-12-29; Accepted 2009-08-10",
}
@Article{Maindonald:2009:SBRb,
author = "John H. Maindonald",
title = "Short Book Review: {{\booktitle{Morphometrics with R}}
by Julien Claude; Michel Baylac; Emmanuel Paradis;
Tristan Stayton}",
journal = j-INT-STAT-REV,
volume = "77",
number = "2",
pages = "302--303",
month = aug,
year = "2009",
CODEN = "ISTRDP",
DOI = "http://dx.doi.org/10.1111/j.1751-5823.2009.00085_3.x;
http://dx.doi.org/10.2307/27919731",
ISSN = "0306-7734 (print), 1751-5823 (electronic)",
ISSN-L = "0306-7734",
bibdate = "Wed Jun 18 06:26:23 MDT 2014",
bibsource = "http://www.jstor.org/stable/i27919718;
http://www.math.utah.edu/pub/tex/bib/intstatrev.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstor.org/stable/27919731",
acknowledgement = ack-nhfb,
fjournal = "International Statistical Review = Revue
Internationale de Statistique",
journal-URL = "http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1751-5823;
http://www.jstor.org/journals/03067734.html",
onlinedate = "2 Jul 2009",
}
@Article{Maloney:2009:BRB,
author = "Laurence T. Maloney",
title = "Book Review: {{\booktitle{Introduction to Probability
with R}}}",
journal = j-J-STAT-SOFT,
volume = "30",
number = "BR-1",
pages = "??--??",
month = apr,
year = "2009",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v30/b01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-04-27; Accepted 2009-04-27",
}
@Article{Meyer:2009:GCS,
author = "David Meyer and Kurt Hornik",
title = "Generalized and Customizable Sets in {R}",
journal = j-J-STAT-SOFT,
volume = "31",
number = "2",
pages = "??--??",
month = aug,
year = "2009",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v31/i02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-01-21; Accepted 2009-06-11",
}
@Book{Muenchen:2009:RSS,
author = "Robert A. Muenchen",
title = "{R} for {SAS} and {SPSS} users",
publisher = pub-SV,
address = pub-SV:adr,
pages = "xvii + 470",
year = "2009",
ISBN = "0-387-09417-2",
ISBN-13 = "978-0-387-09417-5",
bibdate = "Sat Jun 13 09:29:38 MDT 2009",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.bibsys.no:2100/BIBSYS",
series = "Statistics and computing",
acknowledgement = ack-nhfb,
subject = "SAS (computer file); SPSS (computer file); R (computer
programming language)",
tableofcontents = "1. Introduction \\
2. The Five Main Parts of SAS and SPSS \\
3. Programming Conventions \\
4. Typographic Conventions \\
5. Installing and Updating R \\
6. Running R \\
7. Help and Documentation \\
8. Programming Language Basics \\
9. Data Acquisition \\
10. Selecting Variables --- Var, Variables = \\
11. Selecting Observations --- Where, If, Select If,
Filter \\
12. Selecting Both Variables and Observations \\
13. Converting Data Structures \\
14. Data Management \\
15. Value Labels or Formats (and Measurement Level) \\
16. Variable Labels \\
17. Generating Data \\
18. How R Stores Data \\
20. Graphics Overview \\
21. Traditional Graphics \\
22. Graphics with ggplot2 (GPL) \\
23. Statistics \\
24. Conclusion \\
App. A. A Glossary of R Jargon \\
App. B. A Comparison of SAS and SPSS Products with R
Packages and Functions \\
App. C. Automating Your Settings \\
App. D. A comparison of the major attributes of SAS and
SPSS to R",
}
@Article{Murrell:2009:IVG,
author = "Paul Murrell",
title = "Importing Vector Graphics: The {{\tt grImport}}
Package for {R}",
journal = j-J-STAT-SOFT,
volume = "30",
number = "4",
pages = "??--??",
month = apr,
year = "2009",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v30/i04",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-11-16; Accepted 2009-02-27",
}
@Article{Murrell:2009:QCS,
author = "Paul Murrell and Stephen Gardiner",
title = "Quality Control for Statistical Graphics: The {{\tt
graphicsQC}} Package for {R}",
journal = j-J-STAT-SOFT,
volume = "30",
number = "1",
pages = "??--??",
month = apr,
year = "2009",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v30/i01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-12-08; Accepted 2009-02-25",
}
@Article{Myers:2009:BRBc,
author = "Donald E. Myers",
title = "Book Review: {{\booktitle{Applied Econometrics With
R}} by Christian Klieber; Achim Zeileis}",
journal = j-TECHNOMETRICS,
volume = "51",
number = "4",
pages = "484--485",
month = nov,
year = "2009",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/40586665",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:21:31 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i40025250;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics2000.bib",
URL = "http://www.jstor.org/stable/40586665",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Article{Ng:2009:BRB,
author = "Hon Keung Tony Ng",
title = "Book Review: {{\booktitle{Probability and Statistics
With R}} by Maria Dolores Ugarte; Ana F. Militino; Alan
T. Arnholt}",
journal = j-TECHNOMETRICS,
volume = "51",
number = "2",
pages = "220--220",
month = may,
year = "2009",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/40586606",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:21:29 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i40025248;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics2000.bib",
URL = "http://www.jstor.org/stable/40586606",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Article{Nordhausen:2009:SBRb,
author = "Klaus Nordhausen",
title = "Short Book Review: {{\booktitle{A First Course in
Statistical Programming with R}} by W. John Braun,
Duncan J. Murdoch}",
journal = j-INT-STAT-REV,
volume = "77",
number = "2",
pages = "317--317",
month = aug,
year = "2009",
CODEN = "ISTRDP",
DOI = "http://dx.doi.org/10.1111/j.1751-5823.2009.00085_19.x;
http://dx.doi.org/10.2307/27919747",
ISSN = "0306-7734 (print), 1751-5823 (electronic)",
ISSN-L = "0306-7734",
bibdate = "Wed Jun 18 06:26:23 MDT 2014",
bibsource = "http://www.jstor.org/stable/i27919718;
http://www.math.utah.edu/pub/tex/bib/intstatrev.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstor.org/stable/27919747",
acknowledgement = ack-nhfb,
fjournal = "International Statistical Review = Revue
Internationale de Statistique",
journal-URL = "http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1751-5823;
http://www.jstor.org/journals/03067734.html",
onlinedate = "2 Jul 2009",
}
@Article{OBrien:2009:SBRd,
author = "C. M. O'Brien",
title = "Short Book Review: {{\booktitle{Wavelet Methods in
Statistics with R}} by G. P. Nason}",
journal = j-INT-STAT-REV,
volume = "77",
number = "1",
pages = "159--159",
month = apr,
year = "2009",
CODEN = "ISTRDP",
DOI = "http://dx.doi.org/10.2307/27919710;
http://dx.doi.org/10.1111/j.1751-5823.2009.00074_15.x",
ISSN = "0306-7734 (print), 1751-5823 (electronic)",
ISSN-L = "0306-7734",
bibdate = "Wed Jun 18 06:26:23 MDT 2014",
bibsource = "http://www.jstor.org/stable/i27919684;
http://www.math.utah.edu/pub/tex/bib/intstatrev.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstor.org/stable/27919710",
acknowledgement = ack-nhfb,
fjournal = "International Statistical Review = Revue
Internationale de Statistique",
journal-URL = "http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1751-5823;
http://www.jstor.org/journals/03067734.html",
onlinedate = "26 Mar 2009",
}
@Article{OBrien:2009:SBRe,
author = "C. M. O'Brien",
title = "Short Book Review: {{\booktitle{Introduction to
Scientific Programming and Simulation Using R}} by [E.
Stuart] Owen-Jones, Robert Maillardet, Andrew
Robinson}",
journal = j-INT-STAT-REV,
volume = "77",
number = "3",
pages = "471--471",
month = dec,
year = "2009",
CODEN = "ISTRDP",
DOI = "http://dx.doi.org/10.1111/j.1751-5823.2009.00095_8.x;
http://dx.doi.org/10.2307/27919776",
ISSN = "0306-7734 (print), 1751-5823 (electronic)",
ISSN-L = "0306-7734",
bibdate = "Wed Jun 18 06:26:23 MDT 2014",
bibsource = "http://www.jstor.org/stable/i27919757;
http://www.math.utah.edu/pub/tex/bib/intstatrev.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstor.org/stable/27919776",
acknowledgement = ack-nhfb,
fjournal = "International Statistical Review = Revue
Internationale de Statistique",
journal-URL = "http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1751-5823;
http://www.jstor.org/journals/03067734.html",
onlinedate = "29 Oct 2009",
}
@Article{OBrien:2009:SBRg,
author = "C. M. O'Brien",
title = "Short Book Review: {{\booktitle{Nonlinear Regression
with R}} by Christian Ritz, Jens Carl Streibig}",
journal = j-INT-STAT-REV,
volume = "77",
number = "3",
pages = "473--473",
month = dec,
year = "2009",
CODEN = "ISTRDP",
DOI = "http://dx.doi.org/10.1111/j.1751-5823.2009.00095_10.x;
http://dx.doi.org/10.2307/27919778",
ISSN = "0306-7734 (print), 1751-5823 (electronic)",
ISSN-L = "0306-7734",
bibdate = "Wed Jun 18 06:26:23 MDT 2014",
bibsource = "http://www.jstor.org/stable/i27919757;
http://www.math.utah.edu/pub/tex/bib/intstatrev.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstor.org/stable/27919778",
acknowledgement = ack-nhfb,
fjournal = "International Statistical Review = Revue
Internationale de Statistique",
journal-URL = "http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1751-5823;
http://www.jstor.org/journals/03067734.html",
onlinedate = "29 Oct 2009",
}
@Book{Owen-Jones:2009:ISP,
author = "E. Stuart Owen-Jones and Robert Maillardet and Andrew
(Andrew P.) Robinson",
title = "Introduction to scientific programming and simulation
with using {R}",
publisher = pub-CRC,
address = pub-CRC:adr,
pages = "xix + 453",
year = "2009",
ISBN = "1-4200-6872-5",
ISBN-13 = "978-1-4200-6872-6",
LCCN = "Q183.9 .J66 2009",
bibdate = "Fri Nov 16 08:26:36 MST 2012",
bibsource = "fsz3950.oclc.org:210/WorldCat;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
subject = "R (Langage de programmation); Sciences; Informatique;
Simulation par ordinateur; Processus stochastiques;
Mod{\`e}les math{\'e}matiques",
tableofcontents = "I. Programming \\
Setting up \\
R as a calculating environment \\
Basic programming \\
I/O: input and output \\
Programming with functions \\
Sophisticated data structures \\
Better graphics \\
Pointers to further programming techniques \\
II. Numerical techniques \\
Numerical accuracy and program efficiency \\
Root-finding \\
Numerical integration \\
Optimisation \\
III. Probability and statistics \\
Probability \\
Random variables \\
Discrete random variables \\
Continuous random variables \\
Parameter estimation \\
Simulation \\
Monte-Carlo integration \\
Variance reduction \\
Case studies \\
Student projects \\
Glossary of R commands \\
Programs and functions developed in the text",
}
@Book{Petris:2009:DLM,
author = "Giovanni Petris and Sonia Petrone and Patrizia
Campagnoli",
title = "Dynamic linear models With {R}",
publisher = pub-SV,
address = pub-SV:adr,
pages = "xiii + 251",
year = "2009",
ISBN = "0-387-77237-5, 0-387-77238-3",
ISBN-13 = "978-0-387-77237-0, 978-0-387-77238-7",
LCCN = "QA276.45.R3 P48 2009",
bibdate = "Tue Sep 6 08:11:40 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Use R!",
URL = "http://www.loc.gov/catdir/enhancements/fy1108/2009926480-d.htm",
acknowledgement = ack-nhfb,
subject = "R (Computer program language); Linear models
(Statistics); Data processing; State-space methods",
tableofcontents = "Introduction: basic notions about Bayesian
inference \\
Dynamic linear models \\
Model specification \\
Models with unknown parameters \\
Sequential Monte Carlo methods \\
Appendix A: Useful distributions \\
Appendix B: Matrix algebra: singular value
decomposition",
}
@Article{Picka:2009:BRB,
author = "Jeffrey Picka",
title = "Book Review: {{\booktitle{Introduction to Probability
With R}} by K. Baclawski}",
journal = j-TECHNOMETRICS,
volume = "51",
number = "2",
pages = "221--221",
month = may,
year = "2009",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/40586607",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:21:29 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i40025248;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics2000.bib",
URL = "http://www.jstor.org/stable/40586607",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Article{Pienaar:2009:BRB,
author = "Jacques A. Pienaar",
title = "Book Review: {{\booktitle{Probability and statistics
with R}}}",
journal = j-J-APPL-STAT,
volume = "36",
number = "6",
pages = "703--704",
month = jun,
year = "2009",
CODEN = "????",
ISSN = "0266-4763 (print), 1360-0532 (electronic)",
ISSN-L = "0266-4763",
bibdate = "Wed Aug 25 11:41:56 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/japplstat.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.tandf.co.uk/journals/routledge/02664763.html",
note = "See \cite{Ugarte:2008:PSR}.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Applied Statistics",
journal-URL = "http://www.tandfonline.com/loi/cjas20",
}
@Article{Polzehl:2009:SAS,
author = "J{\"o}rg Polzehl and Karsten Tabelow",
title = "Structural Adaptive Smoothing in Diffusion Tensor
Imaging: The {R} Package {\tt dti}",
journal = j-J-STAT-SOFT,
volume = "31",
number = "9",
pages = "??--??",
month = sep,
year = "2009",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v31/i09",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-01-12; Accepted 2009-06-25",
}
@Book{Ramsay:2009:FDA,
author = "J. O. (James O.) Ramsay and Giles Hooker and Spencer
Graves",
title = "Functional data analysis with {R} and {MATLAB}",
publisher = pub-SV,
address = pub-SV:adr,
pages = "xi + 207",
year = "2009",
ISBN = "0-387-98184-5 (paperback), 0-387-98185-3 (e-book)",
ISBN-13 = "978-0-387-98184-0 (paperback), 978-0-387-98185-7
(e-book)",
LCCN = "QA278 .R365 2009",
bibdate = "Wed Jul 9 10:37:43 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/matlab.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Use R!",
acknowledgement = ack-nhfb,
subject = "MATLAB; Multivariate analysis; Data processing; R
(Computer program language); Datenanalyse; MATLAB; R
(Programm)",
tableofcontents = "Introduction to functional data analysis \\
Essential comparisons of the Matlab and R languages \\
How to specify basis systems for building functions \\
How to build functional data objects \\
Smoothing: computing curves from noisy data \\
Descriptions of functional data \\
Exploring variation: functional principal and canonical
components analysis \\
Registration: aligning features for samples of curves
\\
Functional linear models for scalar responses \\
Linear models for functional responses \\
Functional models and dynamics \\
Symbol table",
}
@Book{Ritz:2009:NRR,
author = "Christian Ritz",
title = "Nonlinear regression with {R}",
publisher = pub-SV,
address = pub-SV:adr,
pages = "xxiii + 252",
year = "2009",
DOI = "http://dx.doi.org/10.1007/978-0-387-09616-2",
ISBN = "0-387-09615-9",
ISBN-13 = "978-0-387-09615-5",
LCCN = "????",
bibdate = "Thu Jul 10 08:46:18 MDT 2014",
bibsource = "fsz3950.oclc.org:210/WorldCat;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
series = "Use R!",
acknowledgement = ack-nhfb,
subject = "Regresi{\'o}n (Estad{\'i}stica); R (Lenguaje de
programaci{\'o}n)",
}
@Article{Robinson:2009:BRB,
author = "Andrew Robinson",
title = "Book Review: {{\booktitle{Adaptive design theory and
implementation using SAS and R}}}",
journal = j-J-APPL-STAT,
volume = "36",
number = "6",
pages = "701--702",
month = jun,
year = "2009",
CODEN = "????",
ISSN = "0266-4763 (print), 1360-0532 (electronic)",
ISSN-L = "0266-4763",
bibdate = "Wed Aug 25 11:41:56 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/japplstat.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.tandf.co.uk/journals/routledge/02664763.html",
acknowledgement = ack-nhfb,
fjournal = "Journal of Applied Statistics",
journal-URL = "http://www.tandfonline.com/loi/cjas20",
}
@Article{Rufibach:2009:CSR,
author = "Kaspar Rufibach",
title = "Code Snippet: reporttools: {R} Functions to Generate
{LaTeX} Tables of Descriptive Statistics",
journal = j-J-STAT-SOFT,
volume = "31",
number = "CS-1",
pages = "??--??",
month = aug,
year = "2009",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v31/c01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-11-13; Accepted 2009-05-05",
}
@Article{Sabatti:2009:BRB,
author = "Chiara Sabatti and Christophe Lalanne",
title = "Book Review: {{\booktitle{Applied Statistical Genetics
with R for Population-Based Association Studies}}}",
journal = j-J-STAT-SOFT,
volume = "31",
number = "BR-2",
pages = "??--??",
month = sep,
year = "2009",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v31/b02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-09-19; Accepted 2009-09-19",
}
@Book{Sawitzki:2009:CSIa,
author = "G{\"u}nther Sawitzki",
title = "Computational statistics: an introduction to {R}",
publisher = pub-CRC,
address = pub-CRC:adr,
pages = "xiv + 251 + 8",
year = "2009",
ISBN = "1-4200-8678-2 (hardcover)",
ISBN-13 = "978-1-4200-8678-2 (hardcover)",
LCCN = "QA276.45.R3 S29 2009",
bibdate = "Thu Jul 10 08:57:23 MDT 2014",
bibsource = "fsz3950.oclc.org:210/WorldCat;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://catdir.loc.gov/catdir/toc/fy0904/2008042298.html",
abstract = "Suitable for a compact course or self-study,
Computational Statistics: An Introduction to R
illustrates how to use the freely available R software
package for data analysis, statistical programming, and
graphics. Integrating R code and examples throughout,
the text only requires basic knowledge of statistics
and computing.\par
This introduction covers one-sample analysis and
distribution diagnostics, regression, two-sample
problems and comparison of distributions, and
multivariate analysis. It uses a range of examples to
demonstrate how R can be employed to tackle statistical
problems. In addition, the handy appendix includes a
collection of R language elements and functions,
serving as a quick reference and starting point to
access the rich information that comes bundled with
R.",
acknowledgement = ack-nhfb,
subject = "R (Computer program language); Mathematical
statistics; Data processing; R; (Programmiersprache);
Datenanalyse.; Datenanalyse; R (Programmiersprache); R
; Statistik.; Data processing.; R (Computer
program language)",
tableofcontents = "1 Basic data analysis \\
R programming conventions \\
Generation of random numbers and patterns \\
Random numbers \\
Patterns \\
Case study: distribution diagnostics \\
Distribution functions \\
Histograms \\
Barcharts \\
Statistics of distribution functions;
Kolmogorov-Smirnov tests \\
Monte Carlo confidence bands \\
Statistics of histograms and related plots; X2-tests
\\
Moments and quantiles \\
R complements \\
Random numbers \\
Graphical comparisons \\
Functions \\
Enhancing graphical displays \\
R internals \\
parse \\
eval \\
print \\
Executing files \\
Packages \\
Statistical summary \\
Literature and additional references \\
2 Regression \\
General regression model \\
Linear model \\
Factors \\
Least squares estimation \\
Regression diagnostics \\
More examples for linear models \\
Model formulae \\
Gauss-Markov estimator and residuals \\
Variance decomposition and analysis of variance \\
Simultaneous inference \\
Scheff{\'e}'s confidence bands \\
Tukey's confidence intervals \\
Case study: titre plates \\
Beyond linear regression \\
Transformations \\
Generalised linear models \\
Local regression \\
R complements \\
Discretisation \\
External data \\
Testing software \\
R data types \\
Classes and polymorphic functions \\
Extractor functions \\
Statistical summary \\
Literature and additional references \\
3 Comparisons \\
Shift/scale families, and stochastic order \\
QQ plot, PP plot, and comparison of distributions \\
Kolmogorov-Smirnov tests \\
Tests for shift alternatives \\
Road map \\
Power and confidence \\
Theoretical power and confidence \\
Simulated power and confidence \\
Quantile estimation \\
Qualitative features of distributions \\
Statistical summary \\
Literature and additional references \\
4 Dimensions 1, 2, 3 \ldots{}, c \\
R Complements \\
Dimensions \\
Selections \\
Projections \\
Marginal distributions and scatter plot matrices \\
Projection pursuit \\
Projections for dimensions 1, 2, 3 \ldots{} 7 \\
Parallel coordinates \\
Sections, conditional distributions and coplots \\
Transformations and dimension reduction \\
Higher dimensions \\
Linear case \\
Partial residuals and added variable plots \\
Non-linear case \\
Example: cusp non-linearity \\
Case study: Melbourne temperature data \\
Curse of dimensionality \\
Case study: body fat \\
High dimensions \\
Statistical summary \\
R as a programming language and environment \\
Help and information \\
Names and search paths \\
Administration and customisation \\
Basic data types \\
Output for objects \\
Object inspection \\
System inspection \\
Complex data types \\
Accessing components \\
Data manipulation \\
Operators \\
Functions \\
Debugging and profiling \\
Control structures \\
Input and output to data streams; external data \\
Libraries, packages \\
Mathematical operators and functions; linear algebra
\\
Model descriptions \\
Graphic functions \\
High-level graphics \\
Low-level graphics \\
Annotations and legends \\
Graphic parameters and Llyout \\
Elementary statistical functions \\
Distributions, random numbers, densities \ldots{} \\
Computing on the language",
}
@Article{Schmidberger:2009:SAP,
author = "Markus Schmidberger and Martin Morgan and Dirk
Eddelbuettel and Hao Yu and Luke Tierney and Ulrich
Mansmann",
title = "State of the Art in Parallel Computing with {R}",
journal = j-J-STAT-SOFT,
volume = "31",
number = "1",
pages = "??--??",
month = aug,
year = "2009",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v31/i01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-12-29; Accepted 2009-06-02",
}
@Article{Scott:2009:SBRa,
author = "David J. Scott",
title = "Short Book Review: {{\booktitle{Applied Econometrics
with R}} by Christian Kleiber, Achim Zeileis}",
journal = j-INT-STAT-REV,
volume = "77",
number = "1",
pages = "164--164",
month = apr,
year = "2009",
CODEN = "ISTRDP",
DOI = "http://dx.doi.org/10.1111/j.1751-5823.2009.00074_20.x;
http://dx.doi.org/10.2307/27919715",
ISSN = "0306-7734 (print), 1751-5823 (electronic)",
ISSN-L = "0306-7734",
bibdate = "Wed Jun 18 06:26:23 MDT 2014",
bibsource = "http://www.jstor.org/stable/i27919684;
http://www.math.utah.edu/pub/tex/bib/intstatrev.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstor.org/stable/27919715",
acknowledgement = ack-nhfb,
fjournal = "International Statistical Review = Revue
Internationale de Statistique",
journal-URL = "http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1751-5823;
http://www.jstor.org/journals/03067734.html",
onlinedate = "26 Mar 2009",
}
@Book{Sheather:2009:MAR,
author = "Simon J. Sheather",
title = "A modern approach to regression with {R}",
publisher = pub-SV,
address = pub-SV:adr,
pages = "xiv + 392",
year = "2009",
ISBN = "0-387-09607-8 (hardcover)",
ISBN-13 = "978-0-387-09607-0 (hardcover)",
LCCN = "QA278.2 .S496 2009",
bibdate = "Thu Jul 10 09:34:47 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Springer texts in statistics",
acknowledgement = ack-nhfb,
subject = "Regression analysis; R (Computer program language);
Regressieanalyse; R (computerprogramma); Analyse de
r{\'e}gression; R (Langage de programmation)",
tableofcontents = "Introduction \\
Simple linear regression \\
Diagnostics and transformations for simple linear
regression \\
Weighted least squares \\
Multiple linear regression \\
Diagnostics and transformations for multiple linear
regression \\
Variable selection \\
Logistic regression \\
Serially correlated errors \\
Mixed models",
}
@Article{Solymos:2009:PED,
author = "P{\'e}ter S{\'o}lymos",
title = "Processing Ecological Data in {R} with the {\tt mefa}
Package",
journal = j-J-STAT-SOFT,
volume = "29",
number = "8",
pages = "??--??",
month = feb,
year = "2009",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v29/i08",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-10-09; Accepted 2009-01-04",
}
@Book{Stapleton:2009:LSM,
author = "James H. Stapleton",
title = "Linear statistical models",
publisher = pub-WILEY,
address = pub-WILEY:adr,
edition = "Second",
pages = "xii + 474",
year = "2009",
ISBN = "0-470-23146-7 (cloth)",
ISBN-13 = "978-0-470-23146-3 (cloth)",
LCCN = "QA279 .S695 2009",
bibdate = "Wed Sep 15 09:37:14 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Wiley series in probability and statistics",
URL = "http://www.wiley.com/WileyCDA/WileyTitle/productCd-0470231467.html",
acknowledgement = ack-nhfb,
subject = "linear models (statistics)",
}
@Book{Stevens:2009:PER,
author = "M. Henry H. (Martin Henry Hoffman) Stevens",
title = "A primer of ecology with {R}",
publisher = pub-SV,
address = pub-SV:adr,
pages = "xvi + 401",
year = "2009",
DOI = "http://dx.doi.org/10.1007/978-0-387-89882-7",
ISBN = "0-387-89881-6 (softcover), 0-387-89882-4 (e-but)",
ISBN-13 = "978-0-387-89881-0 (softcover), 978-0-387-89882-7
(e-but)",
LCCN = "QH541.15.S5 S74 2009",
bibdate = "Thu Jul 10 12:37:02 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Use R!",
acknowledgement = ack-nhfb,
subject = "Ecology; Computer simulation; R (Computer program
language); Philosophy",
}
@Article{Tierney:2009:SPC,
author = "Luke Tierney and A. J. Rossini and Na Li",
title = "{Snow}: a Parallel Computing Framework for the {R}
System",
journal = j-INT-J-PARALLEL-PROG,
volume = "37",
number = "1",
pages = "78--90",
month = feb,
year = "2009",
CODEN = "IJPPE5",
DOI = "http://dx.doi.org/10.1007/s10766-008-0077-2",
ISSN = "0885-7458 (print), 1573-7640 (electronic)",
ISSN-L = "0885-7458",
bibdate = "Wed Sep 1 16:06:47 MDT 2010",
bibsource = "http://springerlink.metapress.com/openurl.asp?genre=issue&issn=0885-7458&volume=37&issue=1;
http://www.math.utah.edu/pub/tex/bib/intjparallelprogram.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.springerlink.com/openurl.asp?genre=article&issn=0885-7458&volume=37&issue=1&spage=78",
acknowledgement = ack-nhfb,
fjournal = "International Journal of Parallel Programming",
journal-URL = "http://link.springer.com/journal/10766",
}
@Article{Unlu:2009:FSR,
author = "Ali {\"U}nl{\"u} and Thomas Kiefer and Ehtibar N.
Dzhafarov",
title = "{Fechnerian} Scaling in {R}: The Package {\tt
fechner}",
journal = j-J-STAT-SOFT,
volume = "31",
number = "6",
pages = "??--??",
month = aug,
year = "2009",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v31/i06",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-03-30; Accepted 2009-07-29",
}
@Article{Valero-Mora:2009:BRBa,
author = "Pedro M. Valero-Mora",
title = "Book Review: {{\booktitle{Introductory Statistics with
R (Second Edition)}}}",
journal = j-J-STAT-SOFT,
volume = "29",
number = "BR-10",
pages = "??--??",
month = jan,
year = "2009",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v29/b10",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-01-15; Accepted 2009-01-15",
}
@Article{Valero-Mora:2009:BRBb,
author = "Pedro M. Valero-Mora",
title = "Book Review: {{\booktitle{Interactive and Dynamic
Graphics for Data Analysis: With R and GGobi}}}",
journal = j-J-STAT-SOFT,
volume = "30",
number = "BR-7",
pages = "??--??",
month = may,
year = "2009",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v30/b07",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-05-11; Accepted 2009-05-11",
}
@Book{Valiente:2009:CPM,
author = "Gabriel Valiente",
title = "Combinatorial pattern matching algorithms in
computational biology using {Perl} and {R}",
publisher = pub-CRC,
address = pub-CRC:adr,
pages = "352",
year = "2009",
ISBN = "1-4200-6973-X (hardcover)",
ISBN-13 = "978-1-4200-6973-0 (hardcover)",
LCCN = "QH324.2 .V35 2009",
bibdate = "Fri Nov 16 06:34:12 MST 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Chapman and Hall/CRC mathematical and computational
biology series",
acknowledgement = ack-nhfb,
subject = "Computational biology; Pattern formation (Biology);
Computer simulation; Graph algorithms; Perl (Computer
program language); R (Computer program language)",
}
@Article{VandenMeersche:2009:CSX,
author = "Karel {Van den Meersche} and Karline Soetaert and Dick
Van Oevelen",
title = "Code Snippet: {{\tt xsample()}}: An {R} Function for
Sampling Linear Inverse Problems",
journal = j-J-STAT-SOFT,
volume = "30",
number = "CS-1",
pages = "??--??",
month = apr,
year = "2009",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v30/c01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-05-26; Accepted 2009-03-31",
}
@Article{Varadhan:2009:BRP,
author = "Ravi Varadhan and Paul Gilbert",
title = "{{\tt BB}}: An {R} Package for Solving a Large System
of Nonlinear Equations and for Optimizing a
High-Dimensional Nonlinear Objective Function",
journal = j-J-STAT-SOFT,
volume = "32",
number = "4",
pages = "??--??",
month = oct,
year = "2009",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v32/i04",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-12-31; Accepted 2009-06-29",
}
@Article{Vinod:2009:MEB,
author = "Hrishikesh D. Vinod and Javier Lopez-de-Lacalle",
title = "Maximum Entropy Bootstrap for Time Series: The {\tt
meboot} {R} Package",
journal = j-J-STAT-SOFT,
volume = "29",
number = "5",
pages = "??--??",
month = jan,
year = "2009",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v29/i05",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-10-17; Accepted 2008-07-04",
}
@Article{Voelkel:2009:SBR,
author = "Joseph G. Voelkel",
title = "Short Book Review: {{\booktitle{R for SAS and SPSS
Users}} by Robert A. Muenchen}",
journal = j-INT-STAT-REV,
volume = "77",
number = "3",
pages = "465--466",
month = dec,
year = "2009",
CODEN = "ISTRDP",
DOI = "http://dx.doi.org/10.1111/j.1751-5823.2009.00095_3.x;
http://dx.doi.org/10.2307/27919771",
ISSN = "0306-7734 (print), 1751-5823 (electronic)",
ISSN-L = "0306-7734",
bibdate = "Wed Jun 18 06:26:23 MDT 2014",
bibsource = "http://www.jstor.org/stable/i27919757;
http://www.math.utah.edu/pub/tex/bib/intstatrev.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstor.org/stable/27919771",
acknowledgement = ack-nhfb,
fjournal = "International Statistical Review = Revue
Internationale de Statistique",
journal-URL = "http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1751-5823;
http://www.jstor.org/journals/03067734.html",
onlinedate = "29 Oct 2009",
}
@Book{Zucchini:2009:HMM,
author = "W. Zucchini and Iain L. MacDonald",
title = "Hidden {Markov} models for time series: an
introduction using {R}",
volume = "110",
publisher = pub-CRC,
address = pub-CRC:adr,
pages = "xxii + 275",
year = "2009",
ISBN = "1-58488-573-4 (hardcover)",
ISBN-13 = "978-1-58488-573-3 (hardcover)",
LCCN = "QA280 .Z83 2009",
bibdate = "Thu Jul 10 12:08:53 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Monographs on statistics and applied probability",
abstract = "\booktitle{Hidden Markov Models for Time Series}
presents an accessible overview of hidden Markov models
for analyzing a wide range of time series data,
including discrete-valued, continuous-valued, circular,
and multivariate. Demonstrating how to apply methods to
real world problems, it features applications from a
variety of fields, such as animal behavior,
epidemiology, and finance. It also discusses the
implementation of all of the techniques using R,
illustrating how R can be used for parameter
estimation, model selection, and model checking. With
numerous exercises, this is outstanding both as a text
for graduate students and as a reference for
researchers, practitioners.",
acknowledgement = ack-nhfb,
subject = "Time-series analysis; Markov processes; R (Computer
program language)",
tableofcontents = "Part 1. Model structure, properties and methods \\
1. Preliminaries: mixtures and Markov chains \\
2. Hidden Markov models: definition and properties \\
3. Estimation by direct maximization of the likelihood
\\
4. Estimation by the EM algorithm \\
5. Forecasting, decoding and state prediction \\
6. Model selection and checking \\
7. Bayesian inference for Poisson HMMs \\
Part 2. Applications \\
9. Epileptic seizures \\
10. Eruptions of the Old Faithful geyser \\
11. Drosophila speed and change of direction \\
12. Wind direction at Koeberg \\
13. Models for financial series \\
14. Births at Edendale Hospital \\
15. Homicides and suicides in Cape Town \\
16. Animal behaviour model with feedback \\
A. Examples of R code \\
B. Some proofs",
}
@Book{Zuur:2009:BGR,
author = "Alain F. Zuur and Elena N. Ieno and Erik H. W. G.
Meesters",
title = "A beginner's guide to {R}",
publisher = pub-SV,
address = pub-SV:adr,
pages = "xv + 218",
year = "2009",
ISBN = "0-387-93836-2 (softcover), 0-387-93837-0 (e-book)",
ISBN-13 = "978-0-387-93836-3 (softcover), 978-0-387-93837-0
(e-book)",
LCCN = "QA276.45.R3 Z88 2009",
bibdate = "Thu Jul 10 09:58:44 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Use R!",
abstract = "Based on their extensive experience with teaching R
and statistics to applied scientists, the authors
provide a beginner's guide to R. To avoid the
difficulty of teaching R and statistics at the same
time, statistical methods are kept to a minimum. The
text covers how to download and install R, import and
manage data, elementary plotting, an introduction to
functions, advanced plotting, and common beginner
mistakes. This book contains everything you need to
know to get started with R. \par
``Its biggest advantage is that it aims only to teach
R\ldots{}It organizes R commands very efficiently, with
much teaching guidance included. I would describe this
book as being handy--it's the kind of book that you
want to keep in your jacket pocket or backpack all the
time, ready for use, like a Swiss Army knife.''
(Loveday Conquest, University of Washington)
\par
``Whilst several books focus on learning statistics in
R\ldots{}, the authors of this book fill a gap in the
market by focusing on learning R whilst almost
completely avoiding any statistical jargon\ldots{}The
fact that the authors have very extensive experience of
teaching R to absolute beginners shines throughout.''
(Mark Mainwaring, Lancaster University)\par
``Exactly what is needed\ldots{}This is great, nice
work. I love the ecological/biological examples; they
will be an enormous help.'' (Andrew J. Tyne, University
of Nebraska-Lincoln).\par
Alain F. Zuur is senior statistician and director of
Highland Statistics Ltd., a statistical consultancy
company based in the UK. He has taught statistics to
more than 5000 ecologists. He is honorary research
fellow in the School of Biological Sciences, Oceanlab,
at the University of Aberdeen, UK. Elena N. Ieno is
senior marine biologist and co-director at Highland
Statistics Ltd. She has been involved in guiding PhD
students on the design and analysis of ecological data.
She is honorary research fellow in the School of
Biological Sciences, Oceanlab, at the University of
Aberdeen, UK. Erik H. W. G. Meesters is a researcher at
the Dutch Institute for Marine Resources and Ecosystem
Studies (IMARES). He specializes in coral reef ecology
and applied statistics and conducts research on North
Sea benthos and seal ecology.",
acknowledgement = ack-nhfb,
subject = "Statistics; Data processing; Software; Science;
Statistical methods; Statistical methods; Data
processing; R (Computer program language); Handbooks,
manuals, etc; Mathematical statistics; Data
processing",
tableofcontents = "1. Introduction \\
2. Getting data into R \\
3. Accessing variables and managing subsets of data \\
4. Simple functions \\
5. introduction to basic plotting tools \\
6. Loops and functions \\
7. Graphing tools \\
8. introduction to the lattice package \\
9. Common R mistakes",
}
@Book{Zuur:2009:MEM,
author = "Alain F. Zuur and Elena N. Ieno and Neil J. Walker and
Anatoly A. Saveliev and Graham M. Smith",
title = "Mixed effects models and extensions in ecology with
{R}",
publisher = pub-SV,
address = pub-SV:adr,
pages = "xxii + 574",
year = "2009",
ISBN = "0-387-87457-7 (hardcover)",
ISBN-13 = "978-0-387-87457-9 (hardcover)",
LCCN = "QH541.15.S72 M59 2009",
bibdate = "Thu Jul 10 08:44:44 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Statistics for biology and health",
acknowledgement = ack-nhfb,
subject = "Ecology; Statistical methods; R (Computer program
language)",
tableofcontents = "Limitations of linear regression applied on
ecological data \\
Things are not always linear: additive modeling \\
Dealing with heterogeneity \\
Mixed effects modeling for nested data \\
Violation of independence. Part 1 \\
Violation of independence. Part 2 \\
Meet the exponential family \\
GLM and GAM for count data \\
GLM and GAM for absence-presence and proportional data
\\
Zero-truncated and zero-inflated models for count data
\\
Generalised estimation equations \\
GLMM and GAMM \\
Estimating trends for Antarctic birds in relation to
climate change / A. F. Zuur \ldots{} [et al.] \\
Large scale impacts of land-use change in a Scottish
farming catchment / A. F. Zuur \ldots{} [et al.] \\
Negative binomial GAM and GAMM to analyse amphibian
roadkills / A. F. Zuur \ldots{} [et al.] \\
Additive mixed modelling applied on deep-sea pelagic
bioluminescent organisms / A. F. Zuur \ldots{} [et al.]
\\
Additive mixed modelling applied on phytoplankton time
series data / A. F. Zuur \ldots{} [et al.] \\
Mixed effects modelling applied on American foulbrood
affecting honey bees larvae / A. F. Zuur \ldots{} [et
al.] \\
Three-way nested data for age determination techniques
applied to cetaceans / E. N. Ieno \ldots{} [et al.] \\
GLMM applied on the spatial distribution of koalas in a
fragmented landscape / J. R. Rhodes \ldots{} [et al.]
\\
A comparison of GLM, GEE, and GLMM applied to badger
activity data / N. J. Walker \ldots{} [et al.] \\
Incorporating temporal correlation in seal abundance
data with MCMC / A. A. Saveliev \ldots{} [et al.] \\
Required pre-knowledge: a linear regression and
additive modelling example",
}
@Article{Abreu:2010:HDG,
author = "Gabriel C. G. Abreu and Rodrigo Labouriau and David
Edwards",
title = "High-Dimensional Graphical Model Search with the {{\tt
gRapHD}} {R} Package",
journal = j-J-STAT-SOFT,
volume = "37",
number = "1",
pages = "??--??",
month = nov,
year = "2010",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Feb 7 10:00:59 MST 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v37/i01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-08-19; Accepted 2010-08-23",
}
@Book{Adler:2010:RN,
author = "Joseph Adler",
title = "{R} in a nutshell",
publisher = pub-ORA,
address = pub-ORA:adr,
pages = "xx + 611",
year = "2010",
ISBN = "0-596-80170-X",
ISBN-13 = "978-0-596-80170-0",
LCCN = "QA276.45.R3eb; QA276.45.R3; Internet",
bibdate = "Sun Mar 28 14:59:44 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
melvyl.cdlib.org:210/CDL90",
acknowledgement = ack-nhfb,
remark = "December 2009: first edition.",
subject = "R (computer program language); mathematical
statistics; data processing",
}
@Article{Alfons:2010:OOF,
author = "Andreas Alfons and Matthias Templ and Peter
Filzmoser",
title = "An Object-Oriented Framework for Statistical
Simulation: The {R} Package {{\tt simFrame}}",
journal = j-J-STAT-SOFT,
volume = "37",
number = "3",
pages = "??--??",
month = nov,
year = "2010",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Feb 7 10:00:59 MST 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v37/i03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-08-31; Accepted 2010-09-24",
}
@Article{Almquist:2010:UCS,
author = "Zack W. Almquist",
title = "{US} Census Spatial and Demographic Data in {R}: The
{{\tt UScensus2000}} Suite of Packages",
journal = j-J-STAT-SOFT,
volume = "37",
number = "6",
pages = "??--??",
month = nov,
year = "2010",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Feb 7 10:00:59 MST 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v37/i06",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-01-29; Accepted 2010-10-04",
}
@Article{Anonymous:2010:BRBb,
author = "Anonymous",
title = "Book Review: {{\booktitle{Analysis of Integrated and
Cointegrated Time Series With R}} (2nd ed.) by Bernhard
Pfaff}",
journal = j-TECHNOMETRICS,
volume = "52",
number = "1",
pages = "145--145",
month = feb,
year = "2010",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/40586696",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:21:33 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i40025251;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics2010.bib",
URL = "http://www.jstor.org/stable/40586696",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Article{Archer:2010:RRP,
author = "Kellie J. Archer",
title = "{{\tt rpartOrdinal}}: An {R} Package for Deriving a
Classification Tree for Predicting an Ordinal
Response",
journal = j-J-STAT-SOFT,
volume = "34",
number = "7",
pages = "??--??",
month = apr,
year = "2010",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v34/i07",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-08-07; Accepted 2010-03-18",
}
@Article{Boik:2010:RPA,
author = "John C. Boik and Balasubramanian Narasimhan",
title = "An {R} Package for Assessing Drug Synergism\slash
Antagonism",
journal = j-J-STAT-SOFT,
volume = "34",
number = "6",
pages = "??--??",
month = apr,
year = "2010",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v34/i06",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-10-03; Accepted 2010-01-27",
}
@Article{Booth:2010:BRBa,
author = "David Booth",
title = "Book Review: {{\booktitle{Computational Statistics: An
Introduction to R}} by Gunther Sawitzki}",
journal = j-TECHNOMETRICS,
volume = "52",
number = "3",
pages = "364--364",
month = aug,
year = "2010",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/27867261",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:21:35 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i27867243;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics2010.bib",
URL = "http://www.jstor.org/stable/27867261",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Article{Bowman:2010:BRB,
author = "Adrian Bowman",
title = "Book Review: {{\booktitle{Functional Data Analysis
with R and MATLAB}}}",
journal = j-J-STAT-SOFT,
volume = "34",
number = "BR-3",
pages = "??--??",
month = apr,
year = "2010",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/matlab.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v34/b03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-04-15; Accepted 2010-04-15",
}
@Article{Brooms:2010:BRB,
author = "A. C. Brooms",
title = "Book Review: {{\booktitle{Data Manipulation with
R}}}",
journal = j-J-APPL-STAT,
volume = "37",
number = "12",
pages = "2121--2121",
month = dec,
year = "2010",
CODEN = "????",
DOI = "http://dx.doi.org/10.1080/02664760903075531",
ISSN = "0266-4763 (print), 1360-0532 (electronic)",
ISSN-L = "0266-4763",
bibdate = "Mon Sep 5 18:53:11 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/japplstat.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.tandf.co.uk/journals/routledge/02664763.html",
note = "See \cite{Spector:2008:DMR}.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Applied Statistics",
journal-URL = "http://www.tandfonline.com/loi/cjas20",
onlinedate = "19 Nov 2010",
}
@Article{Burr:2010:BRB,
author = "Tom Burr",
title = "Book Review: {{\booktitle{Functional Data Analysis
With R and MATLAB}} by J. Ramsay; G. Hooker; S.
Graves}",
journal = j-TECHNOMETRICS,
volume = "52",
number = "4",
pages = "466--466",
month = nov,
year = "2010",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/40997262",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:21:37 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i40045082;
http://www.math.utah.edu/pub/tex/bib/matlab.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics2010.bib",
URL = "http://www.jstor.org/stable/40997262",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Article{Calcagno:2010:GRP,
author = "Vincent Calcagno and Claire de Mazancourt",
title = "{\tt glmulti}: An {R} Package for Easy Automated Model
Selection with (Generalized) Linear Models",
journal = j-J-STAT-SOFT,
volume = "34",
number = "12",
pages = "??--??",
month = may,
year = "2010",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v34/i12",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-06-19; Accepted 2010-01-29",
}
@Article{Chang:2010:CRP,
author = "Fang Chang and Weiliang Qiu and Ruben H. Zamar and
Ross Lazarus and Xiaogang Wang",
title = "{\tt clues}: An {R} Package for Nonparametric
Clustering Based on Local Shrinking",
journal = j-J-STAT-SOFT,
volume = "33",
number = "4",
pages = "??--??",
month = feb,
year = "2010",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v33/i04",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-03-26; Accepted 2010-01-31",
}
@Article{Chausse:2010:CGM,
author = "Pierre Chauss{\'e}",
title = "Computing Generalized Method of Moments and
Generalized Empirical Likelihood with {R}",
journal = j-J-STAT-SOFT,
volume = "34",
number = "11",
pages = "??--??",
month = may,
year = "2010",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v34/i11",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-08-26; Accepted 2010-01-29",
}
@Book{Cornillon:2010:SAR,
author = "Pierre-Andr{\'e} Cornillon and Arnaud Guyader and
Fran{\c{c}}ois Husson and Nicolas J{\'e}gou and Julie
Josse and Maela Kloareg and Eric Matzner-L{\o}ber and
Laurent Rouvi{\`e}re",
title = "Statistiques avec {R}",
publisher = "Presses universitaires de Rennes",
address = "Rennes, France",
edition = "Second",
pages = "v + 274",
year = "2010",
ISBN = "2-7535-1087-3 (paperback)",
ISBN-13 = "978-2-7535-1087-6 (paperback)",
LCCN = "QA276.45R3 C67.2010",
bibdate = "Thu Jul 10 13:10:39 MDT 2014",
bibsource = "fsz3950.oclc.org:210/WorldCat;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
series = "Pratique de la statistique / [collection] dirig{\'e}e
par {\'E}ric Matzner-L{\o}ber",
URL = "http://catalogue.bnf.fr/ark:/12148/cb42210870p",
acknowledgement = ack-nhfb,
remark = "``Pratique de la statistique'' constitue une autre
forme de titre de la collection.",
subject = "Statistique math{\'e}matique.; R (logiciel).; Gestion;
M{\'e}thodes statistiques; Probl{\`e}mes et exercices.;
Math{\'e}matiques.; Statistiques.; R (logiciel);
statistique; [manuel]; R (Langage de programmation);
Informatique; Logiciels; R (Langage de programmation);
Statistique.",
}
@Article{Cribari-Neto:2010:BRR,
author = "Francisco Cribari-Neto and Achim Zeileis",
title = "Beta Regression in {R}",
journal = j-J-STAT-SOFT,
volume = "34",
number = "2",
pages = "??--??",
month = apr,
year = "2010",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v34/i02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-12-14; Accepted 2010-03-14",
}
@Article{Fay:2010:EAW,
author = "Michael P. Fay and Pamela A. Shaw",
title = "Exact and Asymptotic Weighted Logrank Tests for
Interval Censored Data: The {\tt interval} {R}
Package",
journal = j-J-STAT-SOFT,
volume = "36",
number = "2",
pages = "??--??",
month = aug,
year = "2010",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v36/i02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-04-02; Accepted 2010-03-18",
}
@Article{Furrer:2010:SSM,
author = "Reinhard Furrer and Stephan R. Sain",
title = "{{\tt spam}}: {A} Sparse Matrix {R} Package with
Emphasis on {MCMC} Methods for {Gaussian Markov} Random
Fields",
journal = j-J-STAT-SOFT,
volume = "36",
number = "10",
pages = "??--??",
month = sep,
year = "2010",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Feb 7 10:02:17 MST 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v36/i10",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-07-04; Accepted 2010-05-31",
}
@Book{Gavrilovska:2010:AHP,
editor = "Ada Gavrilovska",
title = "Attaining high performance communications: a vertical
approach",
publisher = pub-CRC,
address = pub-CRC:adr,
pages = "xxxii + 411",
year = "2010",
ISBN = "1-4200-9308-8 (hardcover)",
ISBN-13 = "978-1-4200-9308-7 (hardcover)",
LCCN = "QA76.88 .A77 2010",
bibdate = "Thu Nov 15 17:17:31 MST 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
acknowledgement = ack-nhfb,
subject = "High performance computing",
}
@Article{Glaab:2010:VRP,
author = "Enrico Glaab and Jonathan M. Garibaldi and Natalio
Krasnogor",
title = "{{\tt vrmlgen}}: An {R} Package for {$3$D} Data
Visualization on the {Web}",
journal = j-J-STAT-SOFT,
volume = "36",
number = "8",
pages = "??--??",
month = aug,
year = "2010",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Feb 7 10:02:17 MST 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v36/i08",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-11-25; Accepted 2010-06-06",
}
@Article{Gould:2010:BRB,
author = "Robert Gould",
title = "Book Review: {{\booktitle{A Modern Approach to
Regression with R}}}",
journal = j-J-STAT-SOFT,
volume = "33",
number = "BR-3",
pages = "??--??",
month = mar,
year = "2010",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v33/b03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-03-16; Accepted 2010-03-16",
}
@Article{Gramacy:2010:CIS,
author = "Robert B. Gramacy and Matthew Alan Taddy",
title = "Categorical Inputs, Sensitivity Analysis, Optimization
and Importance Tempering with {\tt tgp} Version 2, an
{R} Package for Treed {Gaussian} Process Models",
journal = j-J-STAT-SOFT,
volume = "33",
number = "6",
pages = "??--??",
month = feb,
year = "2010",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v33/i06",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-01-17; Accepted 2009-12-23",
}
@Article{Gromping:2010:ILE,
author = "Ulrike Gr{\"o}mping",
title = "Inference with Linear Equality and Inequality
Constraints Using {R}: The Package {\tt ic.infer}",
journal = j-J-STAT-SOFT,
volume = "33",
number = "10",
pages = "??--??",
month = feb,
year = "2010",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v33/i10",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-08-20; Accepted 2009-12-16",
}
@Article{Hadfield:2010:MMM,
author = "Jarrod D. Hadfield",
title = "{MCMC} Methods for Multi-Response Generalized Linear
Mixed Models: The {{\tt MCMCglmm}} {R} Package",
journal = j-J-STAT-SOFT,
volume = "33",
number = "2",
pages = "??--??",
month = feb,
year = "2010",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v33/i02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-02-18; Accepted 2009-12-21",
}
@Article{Hahsler:2010:REM,
author = "Michael Hahsler and Margaret H. Dunham",
title = "{{\tt rEMM}}: Extensible {Markov} Model for Data
Stream Clustering in {R}",
journal = j-J-STAT-SOFT,
volume = "35",
number = "5",
pages = "??--??",
month = jul,
year = "2010",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v35/i05",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-05-26; Accepted 2010-05-10",
}
@Article{Harte:2010:PRP,
author = "David Harte",
title = "{{\tt PtProcess}}: An {R} Package for Modelling Marked
Point Processes Indexed by Time",
journal = j-J-STAT-SOFT,
volume = "35",
number = "8",
pages = "??--??",
month = jul,
year = "2010",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v35/i08",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-06-11; Accepted 2010-05-03",
}
@Article{Hilbe:2010:BRB,
author = "Joseph Hilbe",
title = "Book Review: {{\booktitle{Introduction to Scientific
Programming and Scientific Simulation Using R}}}",
journal = j-J-STAT-SOFT,
volume = "36",
number = "BR-4",
pages = "??--??",
month = sep,
year = "2010",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Feb 7 10:02:17 MST 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v36/b04",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-09-16; Accepted 2010-09-16",
}
@Article{Kahm:2010:GFB,
author = "Matthias Kahm and Guido Hasenbrink and Hella
Lichtenberg-Frat{\'e} and Jost Ludwig and Maik
Kschischo",
title = "{\tt grofit}: Fitting Biological Growth Curves with
{R}",
journal = j-J-STAT-SOFT,
volume = "33",
number = "7",
pages = "??--??",
month = feb,
year = "2010",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v33/i07",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-07-14; Accepted 2009-06-18",
}
@Book{Keen:2010:GSD,
author = "K. J. Keen",
title = "Graphics for statistics and data analysis with {R}",
publisher = pub-CHAPMAN-HALL-CRC,
address = pub-CHAPMAN-HALL-CRC:adr,
pages = "xxxiv + 447 + 8",
year = "2010",
ISBN = "1-58488-087-2 (hardcover)",
ISBN-13 = "978-1-58488-087-5 (hardcover)",
LCCN = "QA276.45.R3 K44 2010",
bibdate = "Thu Jul 10 09:54:27 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Chapman and Hall/CRC texts in statistical science
series",
URL = "http://www.loc.gov/catdir/enhancements/fy1013/2009053524-b.html",
acknowledgement = ack-nhfb,
subject = "R (Computer program language); Mathematical
statistics; Graphic methods; Data processing",
tableofcontents = "The graphical display of information \\
Basic charts for the distribution of a single discrete
variable \\
Advanced charts for the distribution of a single
discrete variable \\
Exploratory plots for the distribution of a single
continuous variable \\
Diagnostic plots for the distribution of a continuous
variable \\
Nonparametric density estimation for a single
continuous variable \\
Parametric density estimation for a single continuous
variable \\
Depicting the distribution of two discrete variables
\\
Depicting the distribution of one continuous variable
and one discrete variable \\
Depicting the distribution of two continuous variables
\\
Statistical models for two or more variables \\
Graphical displays for simple linear regression \\
Graphical displays for polynomial regression \\
Visualizing multivariate data",
}
@Book{Kleinman:2010:SRD,
author = "Ken Kleinman and Nicholas J. Horton",
title = "{SAS} and {R}: data management, statistical analysis,
and graphics",
publisher = pub-CRC,
address = pub-CRC:adr,
pages = "xix + 323",
year = "2010",
ISBN = "1-4200-7057-6 (hard back)",
ISBN-13 = "978-1-4200-7057-6 (hard back)",
LCCN = "QA76.73.S27 K54 2010",
bibdate = "Thu Jul 10 09:39:50 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
abstract = "Eliminating the need to consult laborious
documentation, this book presents an easy way to learn
how to perform an analytical task in both SAS and R. It
covers many common tasks, along with more complex
applications. The text provides parallel examples in
SAS and R to demonstrate how to use the software and
derive identical answers regardless of software choice.
It also gives insight into the process of statistical
coding from beginning to end by supplying worked
examples of complex coding tasks. The authors include
an index for.",
acknowledgement = ack-nhfb,
subject = "SAS (Computer program language); R (Computer program
language); SAS (Computer file)",
subject = "SAS (Computer file); SAS (Computer program language);
R (Computer program language); SAS (Computer program
language); R (Computer program language); Statistics;
Software; Data processing; Data analysis; Statistical
methods; Databehandling; Dataanalyse; Statistiske
metoder; R (Computer program language); SAS (Computer
program language)",
tableofcontents = "Data Management \\
Common Statistical Procedures \\
Linear Regression and ANOVA. Regression Generalizations
\\
Graphics \\
Other Topics and Extended Examples \\
Appendices",
}
@Article{Kohl:2010:RPD,
author = "Matthias Kohl and Peter Ruckdeschel",
title = "{R} Package {{\tt distrMod}}: {S4} Classes and Methods
for Probability Models",
journal = j-J-STAT-SOFT,
volume = "35",
number = "10",
pages = "??--??",
month = jul,
year = "2010",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v35/i10",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-04-07; Accepted 2010-04-19",
}
@Article{Kojadinovic:2010:MMD,
author = "Ivan Kojadinovic and Jun Yan",
title = "Modeling Multivariate Distributions with Continuous
Margins Using the {\tt copula} {R} Package",
journal = j-J-STAT-SOFT,
volume = "34",
number = "9",
pages = "??--??",
month = may,
year = "2010",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v34/i09",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-07-07; Accepted 2010-04-23",
}
@Article{Kuhn:2010:BRB,
author = "Max Kuhn",
title = "Book Review: {{\booktitle{Lattice: Multivariate Data
Visualization With R}} by Deepayan Sarkar}",
journal = j-TECHNOMETRICS,
volume = "52",
number = "3",
pages = "363--364",
month = aug,
year = "2010",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/27867260",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:21:35 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i27867243;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics2010.bib",
URL = "http://www.jstor.org/stable/27867260",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Article{Lawrence:2010:RGU,
author = "Michael Lawrence and Duncan Temple Lang",
title = "{RGtk2}: {A} Graphical User Interface Toolkit for
{R}",
journal = j-J-STAT-SOFT,
volume = "37",
number = "8",
pages = "??--??",
month = dec,
year = "2010",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Feb 7 10:00:59 MST 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v37/i08",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-01-30; Accepted 2009-09-23",
}
@Article{Leibovici:2010:STM,
author = "Didier G. Leibovici",
title = "Spatio-Temporal Multiway Data Decomposition Using
Principal Tensor Analysis on $k$-Modes: The {R} Package
{{\tt PTAk}}",
journal = j-J-STAT-SOFT,
volume = "34",
number = "10",
pages = "??--??",
month = may,
year = "2010",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v34/i10",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-05-08; Accepted 2009-08-19",
}
@Article{Leong:2010:BRB,
author = "Chee Kian Leong",
title = "Book Review: {{\booktitle{R in a Nutshell}}}",
journal = j-J-STAT-SOFT,
volume = "36",
number = "BR-2",
pages = "??--??",
month = aug,
year = "2010",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Feb 7 10:02:17 MST 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v36/b02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-08-19; Accepted 2010-08-19",
}
@Article{Liu:2010:ICR,
author = "Hai Liu and Kung-Sik Chan",
title = "Introducing {COZIGAM}: An {R} Package for
Unconstrained and Constrained Zero-Inflated Generalized
Additive Model Analysis",
journal = j-J-STAT-SOFT,
volume = "35",
number = "11",
pages = "??--??",
month = jul,
year = "2010",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v35/i11",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-02-25; Accepted 2009-07-13",
}
@Article{Maindonald:2010:SBRc,
author = "John H. Maindonald",
title = "Short Book Review: {{\booktitle{Introductory Time
Series with R}} by Paul S. P. Cowpertwait, Andrew V.
Metcalfe}",
journal = j-INT-STAT-REV,
volume = "78",
number = "3",
pages = "452--453",
month = dec,
year = "2010",
CODEN = "ISTRDP",
DOI = "http://dx.doi.org/10.1111/j.1751-5823.2010.00122_7.x;
http://dx.doi.org/10.2307/27919869",
ISSN = "0306-7734 (print), 1751-5823 (electronic)",
ISSN-L = "0306-7734",
bibdate = "Wed Jun 18 06:26:15 MDT 2014",
bibsource = "http://www.jstor.org/stable/i27919854;
http://www.math.utah.edu/pub/tex/bib/intstatrev.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstor.org/stable/27919869",
acknowledgement = ack-nhfb,
fjournal = "International Statistical Review = Revue
Internationale de Statistique",
journal-URL = "http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1751-5823;
http://www.jstor.org/journals/03067734.html",
onlinedate = "28 Dec 2010",
}
@Article{Mair:2010:GFM,
author = "Patrick Mair and Jan de Leeuw",
title = "A General Framework for Multivariate Analysis with
Optimal Scaling: The {R} Package {\tt aspect}",
journal = j-J-STAT-SOFT,
volume = "32",
number = "9",
pages = "??--??",
month = jan,
year = "2010",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v32/i09",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-03-24; Accepted 2009-11-09",
}
@Article{Merl:2010:ARP,
author = "Daniel Merl and Leah R. Johnson and Robert B. Gramacy
and Marc Mangel",
title = "{\tt amei}: An {R} Package for the Adaptive Management
of Epidemiological Interventions",
journal = j-J-STAT-SOFT,
volume = "36",
number = "6",
pages = "??--??",
month = aug,
year = "2010",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v36/i06",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-06-22; Accepted 2010-06-24",
}
@Article{Militino:2010:BRB,
author = "Ana F. Militino",
title = "Book Review: {{\booktitle{Statistics and data with
R}}}",
journal = j-J-APPL-STAT,
volume = "37",
number = "2",
pages = "357--358",
month = feb,
year = "2010",
CODEN = "????",
ISSN = "0266-4763 (print), 1360-0532 (electronic)",
ISSN-L = "0266-4763",
bibdate = "Wed Aug 25 11:41:57 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/japplstat.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.tandf.co.uk/journals/routledge/02664763.html",
note = "See \cite{Cohen:2008:SDR}.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Applied Statistics",
journal-URL = "http://www.tandfonline.com/loi/cjas20",
}
@Article{Moreira:2010:DRP,
author = "Carla Moreira and Jacobo de U{\~n}a-{\'A}lvarez and
Rosa M. Crujeiras",
title = "{{\tt DTDA}}: An {R} Package to Analyze Randomly
Truncated Data",
journal = j-J-STAT-SOFT,
volume = "37",
number = "7",
pages = "??--??",
month = nov,
year = "2010",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Feb 7 10:00:59 MST 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v37/i07",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-12-11; Accepted 2010-07-07",
}
@Article{Muggeo:2010:ATE,
author = "Vito M. R. Muggeo",
title = "Analyzing Temperature Effects on Mortality Within the
{R} Environment: The Constrained Segmented Distributed
Lag Parameterization",
journal = j-J-STAT-SOFT,
volume = "32",
number = "12",
pages = "??--??",
month = jan,
year = "2010",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v32/i12",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-12-16; Accepted 2009-12-11",
}
@Article{OBrien:2010:SBRd,
author = "Carl M. O'Brien",
title = "Short Book Review: {{\booktitle{Dynamic Linear Models
with R}} by Giovanni Petris, Sonia Petrone, Patrizia
Campagnoli}",
journal = j-INT-STAT-REV,
volume = "78",
number = "1",
pages = "157--157",
month = apr,
year = "2010",
CODEN = "ISTRDP",
DOI = "http://dx.doi.org/10.1111/j.1751-5823.2010.00109_26.x;
http://dx.doi.org/10.2307/27919824",
ISSN = "0306-7734 (print), 1751-5823 (electronic)",
ISSN-L = "0306-7734",
bibdate = "Wed Jun 18 06:26:15 MDT 2014",
bibsource = "http://www.jstor.org/stable/i27919788;
http://www.math.utah.edu/pub/tex/bib/intstatrev.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstor.org/stable/27919824",
acknowledgement = ack-nhfb,
fjournal = "International Statistical Review = Revue
Internationale de Statistique",
journal-URL = "http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1751-5823;
http://www.jstor.org/journals/03067734.html",
onlinedate = "1 Apr 2010",
}
@Article{Olive:2010:BRBb,
author = "David J. Olive",
title = "Book Review: {{\booktitle{Software for Data Analysis:
Programming With R}} by J. M. Chambers}",
journal = j-TECHNOMETRICS,
volume = "52",
number = "2",
pages = "261--261",
month = may,
year = "2010",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/27867236",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:21:34 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i27867218;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics2010.bib",
URL = "http://www.jstor.org/stable/27867236",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Article{Olive:2010:BRBc,
author = "David J. Olive",
title = "Book Review: {{\booktitle{Mixed Effects Models and
Extensions in Ecology With R}} by A. F. Zuur; E. N.
Ieno; N. J. Walker; A. A. Saveliev; G. M. Smith}",
journal = j-TECHNOMETRICS,
volume = "52",
number = "4",
pages = "464--465",
month = nov,
year = "2010",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/40997258",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:21:37 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i40045082;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics2010.bib",
URL = "http://www.jstor.org/stable/40997258",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Article{Ooms:2010:BRB,
author = "Jeroen Ooms",
title = "Book Review: {{\booktitle{SAS and R}}}",
journal = j-J-STAT-SOFT,
volume = "37",
number = "BR-3",
pages = "??--??",
month = dec,
year = "2010",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Feb 7 10:00:59 MST 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v37/b03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-01-03; Accepted 2011-01-03",
}
@Article{Pateiro-Lopez:2010:GCH,
author = "Beatriz Pateiro-L{\'o}pez and Alberto
Rodr{\'\i}guez-Casal",
title = "Generalizing the Convex Hull of a Sample: The {R}
Package {\tt alphahull}",
journal = j-J-STAT-SOFT,
volume = "34",
number = "5",
pages = "??--??",
month = apr,
year = "2010",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v34/i05",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-04-03; Accepted 2009-07-07",
}
@Article{Petris:2010:RPD,
author = "Giovanni Petris",
title = "An {R} Package for Dynamic Linear Models",
journal = j-J-STAT-SOFT,
volume = "36",
number = "12",
pages = "??--??",
month = oct,
year = "2010",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Feb 7 10:02:17 MST 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v36/i12",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-04-20; Accepted 2010-03-05",
}
@Article{Phillips:2010:CSR,
author = "Kem Phillips",
title = "Code Snippet: {R} Functions to Symbolically Compute
the Central Moments of the Multivariate Normal
Distribution",
journal = j-J-STAT-SOFT,
volume = "33",
number = "CS-1",
pages = "??--??",
month = feb,
year = "2010",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v33/c01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-05-21; Accepted 2009-11-20",
}
@Article{Piras:2010:SSM,
author = "Gianfranco Piras",
title = "{\tt sphet}: Spatial Models with Heteroskedastic
Innovations in {R}",
journal = j-J-STAT-SOFT,
volume = "35",
number = "1",
pages = "??--??",
month = jun,
year = "2010",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v35/i01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-10-26; Accepted 2010-03-31",
}
@Article{Qian:2010:BRBa,
author = "Lianfen Qian",
title = "Book Review: {{\booktitle{Time Series Analysis With
Applications in R}} (2nd ed.) by Jonathan D. Cryer;
Kung-Sik Chan}",
journal = j-TECHNOMETRICS,
volume = "52",
number = "3",
pages = "365--365",
month = aug,
year = "2010",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/27867262",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:21:35 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i27867243;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics2010.bib",
URL = "http://www.jstor.org/stable/27867262",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Article{Recchia:2010:CSR,
author = "Anthony Recchia",
title = "Code Snippet: {R}-Squared Measures for Two-Level
Hierarchical Linear Models Using {SAS}",
journal = j-J-STAT-SOFT,
volume = "32",
number = "CS-2",
pages = "??--??",
month = jan,
year = "2010",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v32/c02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-07-02; Accepted 2009-12-17",
}
@Article{Rizopoulos:2010:JRP,
author = "Dimitris Rizopoulos",
title = "{{\tt JM}}: An {R} Package for the Joint Modelling of
Longitudinal and Time-to-Event Data",
journal = j-J-STAT-SOFT,
volume = "35",
number = "9",
pages = "??--??",
month = jul,
year = "2010",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v35/i09",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-08-31; Accepted 2010-07-07",
}
@Book{Robert:2010:IMC,
author = "Christian P. Robert and George Casella",
title = "Introducing {Monte Carlo} methods with {R}",
publisher = pub-SV,
address = pub-SV:adr,
pages = "xix + 283",
year = "2010",
DOI = "http://dx.doi.org/10.1007/978-1-4419-1576-4",
ISBN = "1-4419-1576-1 (paperback), 1-4419-1575-3 (paperback)",
ISBN-13 = "978-1-4419-1576-4 (paperback), 978-1-4419-1575-7
(paperback)",
LCCN = "QA298 .R63 2010; QA298; Internet; QA298 .R63 2010eb",
bibdate = "Wed Apr 21 17:03:42 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
melvyl.cdlib.org:210/CDL90",
series = "Use R!",
acknowledgement = ack-nhfb,
subject = "Monte Carlo method; computer programs; mathematical
statistics; data processing; R (computer program
language); Markov processes",
}
@Book{Rosenbaum:2010:DOS,
author = "Paul R. Rosenbaum",
title = "Design of Observational Studies",
volume = "??",
publisher = pub-SV,
address = pub-SV:adr,
pages = "xviii + 384",
year = "2010",
CODEN = "????",
DOI = "http://dx.doi.org/10.1007/978-1-4419-1213-8",
ISBN = "1-4419-1212-6 (hardcover), 1-4419-1213-4 (e-book)",
ISBN-13 = "978-1-4419-1212-1 (hardcover), 978-1-4419-1213-8
(e-book)",
ISSN = "0172-7397",
ISSN-L = "0172-7397",
LCCN = "QA279.R669 2010",
bibdate = "Thu Jun 19 06:41:21 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/probstat2010.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
series = "Springer Series in Statistics",
URL = "http://link.springer.com/book/10.1007/978-1-4419-1213-8",
acknowledgement = ack-nhfb,
remark = "Most volumes in this series are unnumbered.",
series-URL = "http://link.springer.com/bookseries/692",
subject = "Analysis of variance; Experimental design;
Mathematics",
tableofcontents = "Part I Beginnings \\
1 Dilemmas and Craftsmanship \\
2 Causal Inference in Randomized Experiments \\
3 Two Simple Models for Observational Studies \\
4 Competing Theories Structure Design \\
5 Opportunities, Devices, and Instruments \\
6 Transparency \\
Part II Matching \\
7 A Matched Observational Study \\
8 Basic Tools of Multivariate Matching \\
9 Various Practical Issues in Matching \\
10 Fine Balance \\
11 Matching Without Groups \\
12 Risk-Set Matching \\
13 Matching in R \\
Part III Design Sensitivity \\
14 The Power of a Sensitivity Analysis and Its Limit
\\
15 Heterogeneity and Causality \\
16 Uncommon but Dramatic Responses to Treatment \\
17 Anticipated Patterns of Response \\
Part IV Planning Analysis \\
18 After Matching, Before Analysis \\
19 Planning the Analysis \\
Summary: Key Elements of Design \\
Solutions to Common Problems \\
References \\
Symbols \\
Acronyms \\
Glossary of Statistical Terms \\
Some Books \\
References \\
Suggested Readings for a Course \\
References \\
Index",
}
@Article{Rosenblad:2010:SBRa,
author = "Andreas Rosenblad",
title = "Short Book Review: {{\booktitle{Permutation Tests for
Stochastic Ordering and ANOVA: Theory and Applications
with R}} by Dario Basso, Fortunato Pesarin, Luigi
Salmaso, Aldo Solari}",
journal = j-INT-STAT-REV,
volume = "78",
number = "3",
pages = "446--446",
month = dec,
year = "2010",
CODEN = "ISTRDP",
DOI = "http://dx.doi.org/10.1111/j.1751-5823.2010.00122_2.x;
http://dx.doi.org/10.2307/27919864",
ISSN = "0306-7734 (print), 1751-5823 (electronic)",
ISSN-L = "0306-7734",
bibdate = "Wed Jun 18 06:26:15 MDT 2014",
bibsource = "http://www.jstor.org/stable/i27919854;
http://www.math.utah.edu/pub/tex/bib/intstatrev.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstor.org/stable/27919864",
acknowledgement = ack-nhfb,
fjournal = "International Statistical Review = Revue
Internationale de Statistique",
journal-URL = "http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1751-5823;
http://www.jstor.org/journals/03067734.html",
onlinedate = "28 Dec 2010",
}
@Article{Sanchez:2010:BRBa,
author = "Juana Sanchez",
title = "Book Review: {{\booktitle{Introductory Time Series
with R}}}",
journal = j-J-STAT-SOFT,
volume = "32",
number = "BR-4",
pages = "??--??",
month = jan,
year = "2010",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v32/b04",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-01-11; Accepted 2010-01-11",
}
@Article{Sanchez:2010:BRBb,
author = "Juana Sanchez",
title = "Book Review: {{\booktitle{Data Analysis and Graphics
Using R -- An Example-Based Approach (3rd Edition)}}}",
journal = j-J-STAT-SOFT,
volume = "36",
number = "BR-6",
pages = "??--??",
month = sep,
year = "2010",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Feb 7 10:02:17 MST 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v36/b06",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-09-21; Accepted 2010-09-21",
}
@Article{Sauter:2010:BRB,
author = "Roger M. Sauter",
title = "Book Review: {{\booktitle{Data Manipulation With R}}
(1st ed.) by Phil Spector}",
journal = j-TECHNOMETRICS,
volume = "52",
number = "3",
pages = "365--365",
month = aug,
year = "2010",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/27867263",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:21:35 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i27867243;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics2010.bib",
URL = "http://www.jstor.org/stable/27867263",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Article{Scott:2010:SBRa,
author = "David J. Scott",
title = "Short Book Review: {{\booktitle{R Through Excel: A
Spreadsheet Interface for Statistics, Data Analysis,
and Graphics}} by Richard M. Heiberger, Erich
Neuwirth}",
journal = j-INT-STAT-REV,
volume = "78",
number = "2",
pages = "324--324",
month = aug,
year = "2010",
CODEN = "ISTRDP",
DOI = "http://dx.doi.org/10.1111/j.1751-5823.2010.00118_10.x;
http://dx.doi.org/10.2307/27919849",
ISSN = "0306-7734 (print), 1751-5823 (electronic)",
ISSN-L = "0306-7734",
bibdate = "Wed Jun 18 06:26:15 MDT 2014",
bibsource = "http://www.jstor.org/stable/i27919828;
http://www.math.utah.edu/pub/tex/bib/intstatrev.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstor.org/stable/27919849",
acknowledgement = ack-nhfb,
fjournal = "International Statistical Review = Revue
Internationale de Statistique",
journal-URL = "http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1751-5823;
http://www.jstor.org/journals/03067734.html",
onlinedate = "3 Aug 2010",
}
@Article{Scott:2010:SBRb,
author = "David Scott",
title = "Short Book Review: {{\booktitle{Introducing Monte
Carlo Methods with R}} by Christian P. Robert, George
Casella}",
journal = j-INT-STAT-REV,
volume = "78",
number = "3",
pages = "476--477",
month = dec,
year = "2010",
CODEN = "ISTRDP",
DOI = "http://dx.doi.org/10.1111/j.1751-5823.2010.00122_29.x;
http://dx.doi.org/10.2307/27919891",
ISSN = "0306-7734 (print), 1751-5823 (electronic)",
ISSN-L = "0306-7734",
bibdate = "Wed Jun 18 06:26:15 MDT 2014",
bibsource = "http://www.jstor.org/stable/i27919854;
http://www.math.utah.edu/pub/tex/bib/intstatrev.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstor.org/stable/27919891",
acknowledgement = ack-nhfb,
fjournal = "International Statistical Review = Revue
Internationale de Statistique",
journal-URL = "http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1751-5823;
http://www.jstor.org/journals/03067734.html",
onlinedate = "28 Dec 2010",
}
@Article{Scutari:2010:LBN,
author = "Marco Scutari",
title = "Learning {Bayesian} Networks with the {\tt bnlearn}
{R} Package",
journal = j-J-STAT-SOFT,
volume = "35",
number = "3",
pages = "??--??",
month = jul,
year = "2010",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v35/i03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-09-30; Accepted 2010-05-13",
}
@Article{Soetaert:2010:BRB,
author = "Karline Soetaert",
title = "Book Review: {{\booktitle{A Primer of Ecology with
R}}}",
journal = j-J-STAT-SOFT,
volume = "32",
number = "BR-3",
pages = "??--??",
month = jan,
year = "2010",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v32/b03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-01-06; Accepted 2010-01-06",
}
@Article{Soetaert:2010:IMS,
author = "Karline Soetaert and Thomas Petzoldt",
title = "Inverse Modelling, Sensitivity and {Monte Carlo}
Analysis in {R} Using Package {{\tt FME}}",
journal = j-J-STAT-SOFT,
volume = "33",
number = "3",
pages = "??--??",
month = feb,
year = "2010",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v33/i03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-09-22; Accepted 2010-01-18",
}
@Article{Soetaert:2010:SDE,
author = "Karline Soetaert and Thomas Petzoldt and R. Woodrow
Setzer",
title = "Solving Differential Equations in {R}: Package {{\tt
deSolve}}",
journal = j-J-STAT-SOFT,
volume = "33",
number = "9",
pages = "??--??",
month = feb,
year = "2010",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v33/i09",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-07-17; Accepted 2010-02-12",
}
@Article{Strobl:2010:BRB,
author = "Carolin Strobl",
title = "Book Review: {{\booktitle{Advances in Social Science
Research Using R}}}",
journal = j-J-STAT-SOFT,
volume = "34",
number = "BR-2",
pages = "??--??",
month = apr,
year = "2010",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v34/b02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-04-13; Accepted 2010-04-13",
}
@Book{Suess:2010:IPS,
author = "Eric A. Suess and Bruce E. Trumbo",
title = "Introduction to probability simulation and {Gibbs}
sampling with {R}",
publisher = pub-SV,
address = pub-SV:adr,
pages = "xiii + 307",
year = "2010",
DOI = "http://dx.doi.org/10.1007/978-0-387-68765-0",
ISBN = "0-387-40273-X (paperback)",
ISBN-13 = "978-0-387-40273-4 (paperback)",
LCCN = "QA276.6 .S84 2010",
bibdate = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib; Thu
Jul 10 10:12:43 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Use R!",
acknowledgement = ack-nhfb,
subject = "Sampling (Statistics); Probabilities; Simulation
methods; R (Computer program language)",
tableofcontents = "Front matter / i--xiii \\
Introductory Examples: Simulation, Estimation, and
Graphics / 1--22 \\
Generating Random Numbers / 23--49 \\
Monte Carlo Integration and Limit Theorems / 51--85 \\
Sampling from Applied Probability Models / 87--117 \\
Screening Tests / 119--138 \\
Markov Chains with Two States / 139--158 \\
Examples of Markov Chains with Larger State Spaces /
159--193 \\
Introduction to Bayesian Estimation / 195--218 \\
Using Gibbs Samplers to Compute Bayesian Posterior
Distributions / 219--248 \\
Using WinBUGS for Bayesian Estimation / 249--274 \\
Appendix: Getting Started with R / 275--299 \\
Back Matter / 301-307",
}
@Book{Tsay:2010:AFT,
author = "Ruey S. Tsay",
title = "Analysis of financial time series",
publisher = pub-WILEY,
address = pub-WILEY:adr,
edition = "Third",
pages = "xxiii + 677",
year = "2010",
DOI = "http://dx.doi.org/10.1002/9780470644560",
ISBN = "0-470-41435-9 (hardcover), 0-470-64456-7 (e-book),
0-470-64455-9 (e-book)",
ISBN-13 = "978-0-470-41435-4 (hardcover), 978-0-470-64456-0
(e-book), 978-0-470-64455-3 (e-book)",
LCCN = "HA30.3 T76 2010eb",
bibdate = "Fri Jul 25 06:48:38 MDT 2014",
bibsource = "fsz3950.oclc.org:210/WorldCat;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
series = "Wiley series in probability and statistics",
URL = "http://proquest.safaribooksonline.com/?fpi=9781118017098;
http://public.eblib.com/EBLPublic/PublicView.do?ptiID=565117;
http://site.ebrary.com/id/10411605;
http://www.myilibrary.com?id=270783;
http://www.myilibrary.com?id=270783\%26ref=toc",
abstract = "This book provides a broad, mature, and systematic
introduction to current financial econometric models
and their applications to modeling and prediction of
financial time series data. It utilizes real-world
examples and real financial data throughout the book to
apply the models and methods described. The author
begins with basic characteristics of financial time
series data before covering three main topics: Analysis
and application of univariate financial time series;
The return series of multiple assets; Bayesian
inference in finance methods. Key features of the new
edition include additional coverage of modern day
topics such as arbitrage, pair trading, realized
volatility, and credit risk modeling; a smooth
transition from S-Plus to R; and expanded empirical
financial data sets. The overall objective of the book
is to provide some knowledge of financial time series,
introduce some statistical tools useful for analyzing
these series and gain experience in financial
applications of various econometric methods.",
acknowledgement = ack-nhfb,
author-dates = "1951--",
keywords = "R (statistical software); S-Plus (statistical
software)",
subject = "Time-series analysis; Econometrics; Risk management;
business and economics; Finance.; Risikomanagement.;
Zeitreihenanalyse.; {\"O}konometrie.; Econometrics.;
Risk management.; Time-series analysis.",
tableofcontents = "Financial time series and their characteristics \\
Linear time series analysis and its applications \\
Conditional heteroscedastic models \\
Nonlinear models and their applications \\
High-frequency data analysis and market microstructure
\\
Continuous-time models and their applications \\
Extreme values, quantiles, and value at risk \\
Multivariate time series analysis and its applications
\\
Principal component analysis and factor models \\
Multivariate volatility models and their applications
\\
State-space models and Kalman filter \\
Markov chain Monte Carlo methods with applications",
}
@Article{Unlu:2010:DRP,
author = "Ali {\"U}nl{\"u} and Anatol Sargin",
title = "{{\tt DAKS}}: An {R} Package for Data Analysis Methods
in Knowledge Space Theory",
journal = j-J-STAT-SOFT,
volume = "37",
number = "2",
pages = "??--??",
month = nov,
year = "2010",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Feb 7 10:00:59 MST 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v37/i02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-03-22; Accepted 2010-08-20",
}
@Article{Viechtbauer:2010:CMA,
author = "Wolfgang Viechtbauer",
title = "Conducting Meta-Analyses in {R} with the {\tt metafor}
Package",
journal = j-J-STAT-SOFT,
volume = "36",
number = "3",
pages = "??--??",
month = aug,
year = "2010",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v36/i03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-09-16; Accepted 2010-06-24",
}
@Article{Visser:2010:DRP,
author = "Ingmar Visser and Maarten Speekenbrink",
title = "{{\tt depmixS4}}: An {R} Package for Hidden {Markov}
Models",
journal = j-J-STAT-SOFT,
volume = "36",
number = "7",
pages = "??--??",
month = aug,
year = "2010",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v36/i07",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-08-19; Accepted 2010-06-21",
}
@Article{Weeks:2010:PRP,
author = "Jonathan P. Weeks",
title = "{\tt plink}: An {R} Package for Linking Mixed-Format
Tests Using {IRT}-Based Methods",
journal = j-J-STAT-SOFT,
volume = "35",
number = "12",
pages = "??--??",
month = jul,
year = "2010",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v35/i12",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-09-30; Accepted 2010-05-10",
}
@Article{Wickham:2010:BRB,
author = "Hadley Wickham and Garrett Grolemund",
title = "Book Review: {{\booktitle{Graphics for Statistics and
Data Analysis with R}}}",
journal = j-J-STAT-SOFT,
volume = "36",
number = "BR-3",
pages = "??--??",
month = sep,
year = "2010",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Feb 7 10:02:17 MST 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v36/b03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-09-01; Accepted 2010-09-01",
}
@Article{Xia:2010:CSP,
author = "Xiao-Qin Xia and Michael McClelland and Yipeng Wang",
title = "Code Snippet: {{\tt PypeR}}, {A} {Python} Package for
Using {R} in {Python}",
journal = j-J-STAT-SOFT,
volume = "35",
number = "CS-2",
pages = "??--??",
month = jul,
year = "2010",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/python.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v35/c02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-10-23; Accepted 2010-03-23",
}
@Article{Yalta:2010:BRB,
author = "A. Talha Yalta",
title = "Book Review: {{\booktitle{Hands-On Intermediate
Econometrics Using R}}}",
journal = j-J-STAT-SOFT,
volume = "33",
number = "BR-1",
pages = "??--??",
month = feb,
year = "2010",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v33/b01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-01-26; Accepted 2010-01-26",
}
@Article{Young:2010:TRP,
author = "Derek S. Young",
title = "{\tt tolerance}: An {R} Package for Estimating
Tolerance Intervals",
journal = j-J-STAT-SOFT,
volume = "36",
number = "5",
pages = "??--??",
month = aug,
year = "2010",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v36/i05",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-07-01; Accepted 2010-06-24",
}
@Article{Zang:2010:SAC,
author = "Yong Zang and Wing Kam Fung and Gang Zheng",
title = "Simple Algorithms to Calculate Asymptotic Null
Distributions of Robust Tests in Case-Control Genetic
Association Studies in {R}",
journal = j-J-STAT-SOFT,
volume = "33",
number = "8",
pages = "??--??",
month = feb,
year = "2010",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v33/i08",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-05-05; Accepted 2009-11-10",
}
@Article{Zeileis:2010:EMF,
author = "Achim Zeileis and Yves Croissant",
title = "Extended Model Formulas in {R}: Multiple Parts and
Multiple Responses",
journal = j-J-STAT-SOFT,
volume = "34",
number = "1",
pages = "??--??",
month = apr,
year = "2010",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Aug 25 09:57:41 MDT 2010",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v34/i01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-09-23; Accepted 2010-03-23",
}
@Article{Abadie:2011:SRP,
author = "Alberto Abadie and Alexis Diamond and Jens
Hainmueller",
title = "{Synth}: An {R} Package for Synthetic Control Methods
in Comparative Case Studies",
journal = j-J-STAT-SOFT,
volume = "42",
number = "13",
pages = "??--??",
month = jun,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Oct 2 07:04:03 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v42/i13",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-02-01; Accepted 2007-12-17",
}
@Book{Allerhand:2011:THR,
author = "Mike Allerhand",
title = "A tiny handbook on {R}",
publisher = pub-SV,
address = pub-SV:adr,
pages = "ix + 83",
year = "2011",
ISBN = "3-642-17979-7, 3-642-17980-0",
ISBN-13 = "978-3-642-17979-2, 978-3-642-17980-8",
LCCN = "QA276.45.R3 A45 2011",
bibdate = "Thu Jul 10 13:32:58 MDT 2014",
bibsource = "fsz3950.oclc.org:210/WorldCat;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
series = "SpringerBriefs in statistics",
URL = "http://d-nb.info/1008556300/04;
http://link.springer.com/openurl?genre=book&isbn=978-3-642-17979-2",
acknowledgement = ack-nhfb,
subject = "R (Programm); Statistik; R",
}
@Article{Bailey:2011:BRB,
author = "Mark Bailey",
title = "Book Review: {{\booktitle{A Beginner's Guide to R}} by
Alain F. Zuur; Elena N. Ieno; Erik H. W. G. Meesters}",
journal = j-TECHNOMETRICS,
volume = "53",
number = "1",
pages = "105--105",
month = feb,
year = "2011",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/40997308",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:45:55 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i40045084;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics2010.bib",
URL = "http://www.jstor.org/stable/40997308",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Article{Bailey:2011:CSI,
author = "Delia Bailey and Jonathan N. Katz",
title = "Code Snippet: Implementing Panel-Corrected Standard
Errors in {R}: The {{\tt pcse}} Package",
journal = j-J-STAT-SOFT,
volume = "42",
number = "CS-1",
pages = "??--??",
month = jun,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Oct 2 07:04:03 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v42/c01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-01-22; Accepted 2007-10-16",
}
@Article{Bordier:2011:TSI,
author = "C{\'e}cile Bordier and Michel Dojat and Pierre Lafaye
de Micheaux",
title = "Temporal and Spatial Independent Component Analysis
for {fMRI} Data Sets Embedded in the {AnalyzeFMRI} {R}
Package",
journal = j-J-STAT-SOFT,
volume = "44",
number = "9",
pages = "??--??",
month = oct,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sat Feb 25 18:33:24 MST 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v44/i09",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-10-29; Accepted 2011-06-16",
}
@Book{Bretz:2011:MCU,
author = "Frank Bretz and Torsten Hothorn and Peter H.
Westfall",
title = "Multiple comparisons using {R}",
publisher = pub-CRC,
address = pub-CRC:adr,
pages = "xvii + 187",
year = "2011",
ISBN = "1-58488-574-2 (hardcover)",
ISBN-13 = "978-1-58488-574-0 (hardcover)",
LCCN = "QA278.4 .B74 2011",
bibdate = "Thu Jul 10 10:01:41 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
abstract = "Adopting a unifying theme based on maximum statistics,
Multiple Comparisons Using R describes the common
underlying theory of multiple comparison procedures
through numerous examples. After giving examples of
multiplicity problems, the book covers general concepts
and basic multiple comparisons procedures, including
the Bonferroni method and Simes' test. It then shows
how to perform parametric multiple comparisons in
standard linear models and general parametric models.
It also introduces the multcomp package in R, which
offers a convenient interface to perform multiple
comparisons in a general context. Following this
theoretical framework, the book explores applications
involving the Dunnett test, Tukey's all pairwise
comparisons, and general multiple contrast tests for
standard regression models, mixed-effects models, and
parametric survival models. The last chapter reviews
other multiple comparison procedures, such as
resampling-based procedures, methods for group
sequential or adaptive designs, and the combination of
multiple comparison procedures with modeling
techniques. Controlling multiplicity in experiments
ensures better decision making and safeguards against
false claims. A self-contained introduction to multiple
comparison procedures, this book offers strategies for
constructing the procedures and illustrates the
framework for multiple hypotheses testing in general
parametric models. It is suitable for readers with R
experience but limited knowledge of multiple comparison
procedures and vice versa.",
acknowledgement = ack-nhfb,
subject = "Multiple comparisons (Statistics); R (Computer program
language)",
tableofcontents = "Introduction \\
General concepts \\
Multiple comparisons in parametric models \\
Applications \\
Further topics",
}
@Article{Burr:2011:BRBa,
author = "Tom Burr and Claire Longo",
title = "Book Review: {{\booktitle{Wavelet Methods in
Statistics With R}} by G. P. Nason}",
journal = j-TECHNOMETRICS,
volume = "53",
number = "2",
pages = "212--213",
month = may,
year = "2011",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/23209736",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:45:56 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i23209715;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics2010.bib",
URL = "http://www.jstor.org/stable/23209736",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Article{Carstensen:2011:ULO,
author = "Bendix Carstensen and Martyn Plummer",
title = "Using {Lexis} Objects for Multi-State Models in {R}",
journal = j-J-STAT-SOFT,
volume = "38",
number = "6",
pages = "??--??",
month = jan,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Feb 7 10:00:59 MST 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v38/i06",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-02-09; Accepted 2010-09-16",
}
@Article{Causeur:2011:FAM,
author = "David Causeur and Chloe Friguet and Magalie
Houee-Bigot and Maela Kloareg",
title = "Factor Analysis for Multiple Testing ({FAMT}): An {R}
Package for Large-Scale Significance Testing under
Dependence",
journal = j-J-STAT-SOFT,
volume = "40",
number = "14",
pages = "??--??",
month = may,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:22:01 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v40/i14",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-07-09; Accepted 2011-04-01",
}
@Book{Chen:2011:CTD,
author = "Ding-Geng Chen and Karl E. Peace",
title = "Clinical trial data analysis using {R}",
publisher = "CRC Press",
address = "Boca Raton, Florida",
pages = "xxiii + 363",
year = "2011",
ISBN = "1-4398-4020-2 (hardcover), 1-4398-4021-0 (e-book)",
ISBN-13 = "978-1-4398-4020-7 (hardcover), 978-1-4398-4021-4
(e-book)",
LCCN = "R853.C55 C44 2011",
bibdate = "Thu Jul 10 12:11:49 MDT 2014",
bibsource = "fsz3950.oclc.org:210/WorldCat;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
series = "Chapman and Hall/CRC biostatistics series",
abstract = "With examples based on the authors' 30 years of
real-world experience in many areas of clinical drug
development, this book provides a thorough presentation
of clinical trial methodology. It presents detailed
step-by-step illustrations on the implementation of the
open-source software R. Case studies demonstrate how to
select the appropriate clinical trial data. The authors
introduce the corresponding biostatistical analysis
methods, followed by the step-by-step data analysis
using R. They also offer the R program for download,
along with other essential data, on their website.",
acknowledgement = ack-nhfb,
subject = "Clinical trials; Statistical methods; R (Computer
program language); Clinical Trials as Topic; methods;
Software; Statistics as Topic; Statistical methods.; R
(Computer program language)",
tableofcontents = "1. Introduction to R \\
2. Overview of clinical trials \\
3. Treatment comparisons in clinical trials \\
4. Treatment comparisons in clinical trials with
covariates \\
5. Analysis of clinical trials with time-to-event
endpoints \\
6. Analysis of data from longitudinal clinical trials
\\
7. Sample size determination and power calculation in
clinical trials \\
8. Meta-analysis of clinical trials \\
9. Bayesian analysis methods in clinical trials \\
10. Analysis of bioequivalence clinical trials \\
11. Analysis of adverse events in clinical trials \\
12. Analysis of DNA microarrays in clinical trials",
}
@Article{Chernick:2011:BRBc,
author = "Michael R. Chernick",
title = "Book Review: {{\booktitle{Multiple Comparisons Using
R}} by Frank Bretz; Torsten Hothorn; Peter Westfall}",
journal = j-TECHNOMETRICS,
volume = "53",
number = "3",
pages = "327--328",
month = aug,
year = "2011",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/23210417",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:45:57 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i23209789;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics2010.bib",
URL = "http://www.jstor.org/stable/23210417",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Book{Chernick:2011:IBM,
author = "Michael R. Chernick and Robert A. LaBudde",
title = "An introduction to bootstrap methods with applications
to {R}",
publisher = pub-WILEY,
address = pub-WILEY:adr,
pages = "xvii + 216",
year = "2011",
ISBN = "0-470-46704-5 (hardcover)",
ISBN-13 = "978-0-470-46704-6 (hardcover)",
LCCN = "QA276.8 .C478 2011",
bibdate = "Thu Jul 10 13:04:38 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
abstract = "This book provides both an elementary and a modern
introduction to the bootstrap for students who do not
have an extensive background in advanced mathematics.
It offers reliable, hands-on coverage of the
bootstrap's considerable advantages -- as well as its
drawbacks. The book outpaces the competition by
skillfully presenting results on improved confidence
set estimation, estimation of error rates in
discriminant analysis, and applications to a wide
variety of hypothesis testing and estimation problems.
To alert readers to the limitations of the method, the
book exhibits counterexamples to the consistency of
bootstrap methods. The authors take great care to draw
connections between the more traditional resampling
methods and the bootstrap, oftentimes displaying
helpful computer routines in R. Emphasis throughout the
book is on the use of the bootstrap as an exploratory
tool including its value in variable selection and
other modeling environments.",
acknowledgement = ack-nhfb,
subject = "Bootstrap (Statistics); R (Computer program
language)",
}
@Book{Chihara:2011:MSR,
author = "Laura Chihara and Tim Hesterberg",
title = "Mathematical statistics with resampling and {R}",
publisher = pub-WILEY,
address = pub-WILEY:adr,
pages = "xiv + 418",
year = "2011",
ISBN = "1-118-02985-2 (hardcover)",
ISBN-13 = "978-1-118-02985-5 (hardcover)",
LCCN = "QA278.8 .C45 2011",
bibdate = "Thu Jul 10 12:53:08 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
abstract = "Resampling helps students understand the meaning of
sampling distributions, sampling variability, P-values,
hypothesis tests, and confidence intervals. This
groundbreaking book shows how to apply modern
resampling techniques to mathematical statistics.
Extensively class-tested to ensure an accessible
presentation, Mathematical Statistics with Resampling
and R utilizes the powerful and flexible computer
language R to underscore the significance and benefits
of modern resampling techniques. The book begins by
introducing permutation tests and bootstrap methods,
motivating classical inference methods. Striking a
balance between theory, computing, and applications,
the authors explore additional topics such as:.
Calculation of sampling distributions. The Central
Limit Theorem. Maximum likelihood estimation and
properties of estimators. Confidence intervals and
hypothesis tests. Throughout the book, case studies on
diverse subjects such as flight delays, birth weights
of babies, and telephone company repair times
illustrate the relevance of the real-world applications
of the discussed material. Key definitions and theorems
of important probability distributions are collected at
the end of the book, and a related website is also
available, featuring additional material including data
sets, R scripts, and helpful teaching hints.
Mathematical Statistics with Resampling and R is an
excellent book for courses on mathematical statistics
at the upper-undergraduate and graduate levels. It also
serves as a valuable reference for applied
statisticians working in the areas of business,
economics, biostatistics, and public health who utilize
resampling methods in their everyday work.",
acknowledgement = ack-nhfb,
author-dates = "1957--",
subject = "Resampling (Statistics); Statistics",
}
@Article{Childs:2011:MFS,
author = "Aaron Childs and Yalin Chen",
title = "Multilevel Fixed and Sequential Acceptance Sampling:
The {R} Package {MFSAS}",
journal = j-J-STAT-SOFT,
volume = "43",
number = "6",
pages = "??--??",
month = jul,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sat Feb 25 18:33:22 MST 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v43/i06",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-06-04; Accepted 2011-06-29",
}
@Article{Choi:2011:LRP,
author = "Seung W. Choi and Laura E. Gibbons and Paul K. Crane",
title = "{{\tt lordif}}: An {R} Package for Detecting
Differential Item Functioning Using Iterative Hybrid
Ordinal Logistic Regression\slash Item Response Theory
and {Monte Carlo} Simulations",
journal = j-J-STAT-SOFT,
volume = "39",
number = "8",
pages = "??--??",
month = mar,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:21:59 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v39/i08",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-02-02; Accepted 2010-10-23",
}
@Article{Clayden:2011:TMR,
author = "Jonathan D. Clayden and Susana Mu{\~n}oz Maniega and
Amos J. Storkey and Martin D. King and Mark E. Bastin
and Chris A. Clark",
title = "{TractoR}: Magnetic Resonance Imaging and Tractography
with {R}",
journal = j-J-STAT-SOFT,
volume = "44",
number = "8",
pages = "??--??",
month = oct,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sat Feb 25 18:33:24 MST 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v44/i08",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-10-28; Accepted 2011-06-02",
}
@Article{Cook:2011:BRB,
author = "Dianne Cook and Heike Hofmann",
title = "Book Review: {{\booktitle{R Graphics}} (2nd
Edition)}",
journal = j-J-STAT-SOFT,
volume = "43",
number = "BR-3",
pages = "??--??",
month = sep,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sat Feb 25 18:33:22 MST 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v43/b03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-09-13; Accepted 2011-09-13",
}
@Book{Cryer:2011:SJX,
author = "Jonathan D. Cryer and Kung-Sik Chan and Hongyu Pan and
others",
title = "Shi jian xu lie fen xi ji ying yong: {R} yu yan =
{Time} series analysis with applications in {R}",
publisher = "Ji xie gong ye chu ban she",
address = "Beijing, China",
pages = "350",
year = "2011",
ISBN = "7-111-32572-9",
ISBN-13 = "978-7-111-32572-7",
LCCN = "????",
bibdate = "Thu Jul 10 09:43:31 MDT 2014",
bibsource = "fsz3950.oclc.org:210/WorldCat;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
series = "Hua zhang shu xue yi cong",
acknowledgement = ack-nhfb,
remark = "500 $ 6 880 - 03 $ a Ju yuan shu di 2 ban yi chu.",
subject = "Time-series analysis; Data processing; R (Computer
program language)",
}
@Article{Culp:2011:SSS,
author = "Mark Culp",
title = "{{\tt spa}}: Semi-Supervised Semi-Parametric
Graph-Based Estimation in {R}",
journal = j-J-STAT-SOFT,
volume = "40",
number = "10",
pages = "??--??",
month = apr,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:22:01 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v40/i10",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-07-23; Accepted 2010-01-11",
}
@Article{Davies:2011:SAS,
author = "Tilman M. Davies and Martin L. Hazelton and Jonathan
C. Marshall",
title = "{{\tt sparr}}: Analyzing Spatial Relative Risk Using
Fixed and Adaptive Kernel Density Estimation in {R}",
journal = j-J-STAT-SOFT,
volume = "39",
number = "1",
pages = "??--??",
month = mar,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:21:59 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v39/i01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-05-02; Accepted 2010-08-10",
}
@Article{DeBoeck:2011:EIR,
author = "Paul {De Boeck} and Marjan Bakker and Robert Zwitser
and Michel Nivard and Abe Hofman and Francis Tuerlinckx
and Ivailo Partchev",
title = "The Estimation of Item Response Models with the {{\tt
lmer}} Function from the {{\tt lme4}} Package in {R}",
journal = j-J-STAT-SOFT,
volume = "39",
number = "12",
pages = "??--??",
month = mar,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:21:59 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v39/i12",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-07-01; Accepted 2010-12-13",
}
@Article{deWreede:2011:MRP,
author = "Liesbeth C. de Wreede and Marta Fiocco and Hein
Putter",
title = "{{\tt mstate}}: An {R} Package for the Analysis of
Competing Risks and Multi-State Models",
journal = j-J-STAT-SOFT,
volume = "38",
number = "7",
pages = "??--??",
month = jan,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Feb 7 10:00:59 MST 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v38/i07",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-01-17; Accepted 2010-08-20",
}
@Article{Eckley:2011:LIL,
author = "Idris A. Eckley and Guy P. Nason",
title = "{LS2W}: Implementing the Locally Stationary {$2$D}
Wavelet Process Approach in {R}",
journal = j-J-STAT-SOFT,
volume = "43",
number = "3",
pages = "??--??",
month = jul,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sat Feb 25 18:33:22 MST 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v43/i03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-11-30; Accepted 2011-06-14",
}
@Article{Eddelbuettel:2011:BRB,
author = "Dirk Eddelbuettel",
title = "Book Review: {{\booktitle{R in a Nutshell}}}",
journal = j-J-STAT-SOFT,
volume = "40",
number = "BR-1",
pages = "??--??",
month = apr,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:22:01 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v40/b01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-04-04; Accepted 2011-04-04",
}
@Article{Eddelbuettel:2011:RSR,
author = "Dirk Eddelbuettel and Romain Fran{\c{c}}ois",
title = "{{\tt Rcpp}}: Seamless {R} and {C++} Integration",
journal = j-J-STAT-SOFT,
volume = "40",
number = "8",
pages = "??--??",
month = apr,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:22:01 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v40/i08",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-11-15; Accepted 2011-03-21",
}
@Article{Evans:2011:BRB,
author = "Gary Evans",
title = "Book Review: {{\booktitle{Exploratory Multivariate
Analysis by Example Using R}}}",
journal = j-J-STAT-SOFT,
volume = "40",
number = "BR-2",
pages = "??--??",
month = apr,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:22:01 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v40/b02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-04-20; Accepted 2011-04-20",
}
@Book{Everitt:2011:IAM,
author = "Brian Everitt and Torsten Hothorn",
title = "An introduction to applied multivariate analysis with
{R}",
publisher = pub-SV,
address = pub-SV:adr,
pages = "xiv + 273",
year = "2011",
ISBN = "1-4419-9649-4, 1-4419-9650-8",
ISBN-13 = "978-1-4419-9649-7, 978-1-4419-9650-3",
LCCN = "QA278 .E87 2011",
bibdate = "Thu Jul 10 12:54:57 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Use R!",
URL = "http://www.loc.gov/catdir/enhancements/fy1304/2011926793-b.html;
http://www.loc.gov/catdir/enhancements/fy1304/2011926793-d.html;
http://www.loc.gov/catdir/enhancements/fy1304/2011926793-t.html",
abstract = "The majority of data sets collected by researchers in
all disciplines are multivariate, meaning that several
measurements, observations, or recordings are taken on
each of the units in the data set. These units might be
human subjects, archaeological artifacts, countries, or
a vast variety of other things. In a few cases, it may
be sensible to isolate each variable and study it
separately, but in most instances all the variables
need to be examined simultaneously in order to fully
grasp the structure and key features of the data. For
this purpose, one or another method of multivariate
analysis might be helpful, and it is with such methods
that this book is largely concerned. Multivariate
analysis includes methods both for describing and
exploring such data and for making formal inferences
about them. The aim of all the techniques is, in
general sense, to display or extract the signal in the
data in the presence of noise and to find out what the
data show us in the midst of their apparent chaos. An
Introduction to Applied Multivariate Analysis with R
explores the correct application of these methods so as
to extract as much information as possible from the
data at hand, particularly as some type of graphical
representation, via the R software. Throughout the
book, the authors give many examples of R code used to
apply the multivariate techniques to multivariate
data.",
acknowledgement = ack-nhfb,
subject = "Multivariate analysis; Data processing; R (Computer
program language); Multivariate Analyse.; R
(Programm)",
tableofcontents = "Multivariate data and multivariate analysis \\
Looking at multivariate data: visualisation \\
Principal components analysis \\
Multidimensional scaling \\
Exploratory factor analysis \\
Cluster analysis \\
Confirmatory factor analysis and structural equation
models \\
The analysis of repeated measures data",
}
@Article{Ferl:2011:DRP,
author = "Gregory Z. Ferl",
title = "{DATforDCEMRI}: An {R} Package for Deconvolution
Analysis and Visualization of {DCE-MRI} Data",
journal = j-J-STAT-SOFT,
volume = "44",
number = "3",
pages = "??--??",
month = oct,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sat Feb 25 18:33:24 MST 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v44/i03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-10-11; Accepted 2011-06-22",
}
@Article{Fiske:2011:URP,
author = "Ian Fiske and Richard Chandler",
title = "{\tt unmarked}: An {R} Package for Fitting
Hierarchical Models of Wildlife Occurrence and
Abundance",
journal = j-J-STAT-SOFT,
volume = "43",
number = "10",
pages = "??--??",
month = aug,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sat Feb 25 18:33:22 MST 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v43/i10",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-05-06; Accepted 2011-07-29",
}
@Article{Gabadinho:2011:AVS,
author = "Alexis Gabadinho and Gilbert Ritschard and Nicolas S.
M{\"u}ller and Matthias Studer",
title = "Analyzing and Visualizing State Sequences in {R} with
{{\tt TraMineR}}",
journal = j-J-STAT-SOFT,
volume = "40",
number = "4",
pages = "??--??",
month = apr,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:22:01 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v40/i04",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-08-12; Accepted 2011-01-03",
}
@Article{Gasparrini:2011:DLL,
author = "Antonio Gasparrini",
title = "Distributed Lag Linear and Non-Linear Models in {R}:
The Package {\tt dlnm}",
journal = j-J-STAT-SOFT,
volume = "43",
number = "8",
pages = "??--??",
month = jul,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sat Feb 25 18:33:22 MST 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v43/i08",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-06-03; Accepted 2011-07-13",
}
@Article{Goitisolo:2011:SAP,
author = "Beatriz Goitisolo and Amaya Z{\'a}rraga",
title = "Simultaneous Analysis in {S-PLUS}: The {{\tt
SimultAn}} Package",
journal = j-J-STAT-SOFT,
volume = "40",
number = "11",
pages = "??--??",
month = apr,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:22:01 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v40/i11",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-07-22; Accepted 2011-04-13",
}
@Article{Goldstein:2011:BSU,
author = "Richard Goldstein",
title = "{{\booktitle{R for Stata Users}} by Robert A.
Muenchen; Joseph M. Hilbe}",
journal = j-TECHNOMETRICS,
volume = "53",
number = "4",
pages = "442--442",
month = nov,
year = "2011",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/41714959",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:45:58 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i40080565;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics2010.bib",
URL = "http://www.jstor.org/stable/41714959",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Article{Goslee:2011:ARS,
author = "Sarah C. Goslee",
title = "Analyzing Remote Sensing Data in {R}: The {\tt
landsat} Package",
journal = j-J-STAT-SOFT,
volume = "43",
number = "4",
pages = "??--??",
month = jul,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sat Feb 25 18:33:22 MST 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v43/i04",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-09-29; Accepted 2011-06-16",
}
@Article{Gromping:2011:BRB,
author = "Ulrike Gr{\"o}mping",
title = "Book Review: {{\booktitle{Optimal Experimental Design
with R}}}",
journal = j-J-STAT-SOFT,
volume = "43",
number = "BR-5",
pages = "??--??",
month = oct,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sat Feb 25 18:33:22 MST 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v43/b05",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-10-17; Accepted 2011-10-17",
}
@Article{Grun:2011:TRP,
author = "Bettina Gr{\"u}n and Kurt Hornik",
title = "{{\tt topicmodels}}: An {R} Package for Fitting Topic
Models",
journal = j-J-STAT-SOFT,
volume = "40",
number = "13",
pages = "??--??",
month = may,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:22:01 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v40/i13",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-09-23; Accepted 2011-04-26",
}
@Article{Haneuse:2011:ORP,
author = "Sebastien Haneuse and Takumi Saegusa and Thomas
Lumley",
title = "{{\tt osDesign}}: An {R} Package for the Analysis,
Evaluation, and Design of Two-Phase and Case-Control
Studies",
journal = j-J-STAT-SOFT,
volume = "43",
number = "11",
pages = "??--??",
month = aug,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sat Feb 25 18:33:22 MST 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v43/i11",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-05-10; Accepted 2011-07-29",
}
@Article{Hofert:2011:NAC,
author = "Marius Hofert and Martin Maechler",
title = "Nested {Archimedean} Copulas Meet {R}: The {{\tt
nacopula}} Package",
journal = j-J-STAT-SOFT,
volume = "39",
number = "9",
pages = "??--??",
month = mar,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:21:59 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v39/i09",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-07-01; Accepted 2010-11-15",
}
@Article{Hoffmann:2011:CSP,
author = "Thomas J. Hoffmann",
title = "Code Snippet: Passing in Command Line Arguments and
Parallel Cluster\slash Multicore Batching in {R} with
{{\tt batch}}",
journal = j-J-STAT-SOFT,
volume = "39",
number = "CS-1",
pages = "??--??",
month = mar,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:21:59 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v39/c01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-12-16; Accepted 2010-08-09",
}
@Book{Horton:2011:URD,
author = "Nicholas J. Horton and Ken Kleinman",
title = "Using {R} for data management, statistical analysis,
and graphics",
publisher = "CRC Press",
address = "Boca Raton",
pages = "xxii + 275",
year = "2011",
DOI = "http://dx.doi.org/10.1201/9781439827567",
ISBN = "1-4398-2755-9 (paperback)",
ISBN-13 = "978-1-4398-2755-0 (paperback)",
LCCN = "QA76.73.R3 H67 2011",
MRclass = "68-00 68U05 68N15",
bibdate = "Thu Jul 10 11:55:49 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
abstract = "\booktitle{Using R for Data Management, Statistical
Analysis, and Graphics} presents an easy way to learn
how to perform an analytical task in R, without having
to navigate through the extensive, idiosyncratic, and
sometimes unwieldly software documentation and vast
number of add-on packages. Organized by short, clear
descriptive entries, the book covers many common tasks,
such as data management, descriptive summaries,
inferential procedures, regression analysis,
multivariate methods, and the creation of graphics.
Through the extensive indexing, cross-referencing, and
worked examples in this text, users can directly find
and implement the material they need. The text includes
convenient indices organized by topic and R syntax.
Demonstrating the R code in action and facilitating
exploration, the authors present example analyses that
employ a single dataset from the HELP study. They also
provides several case studies of more complex
applications. Datasets and code are available for
download on the book's Web site. Helping to improve
your analytical skills, this book lucidly summarizes
the aspects of R most often used by statistical
analysts. New users of R will find the simple approach
easy to understand while more sophisticated users will
appreciate the invaluable source of task-oriented
information.",
acknowledgement = ack-nhfb,
subject = "R (Computer program language); Open source software;
Database management; Mathematical statistics; Data
processing",
}
@Article{Howard:2011:BRB,
author = "James P. Howard",
title = "Book Review: {{\booktitle{R Cookbook}}}",
journal = j-J-STAT-SOFT,
volume = "40",
number = "BR-3",
pages = "??--??",
month = apr,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:22:01 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v40/b03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-04-27; Accepted 2011-04-27",
}
@Book{Husson:2011:EMA,
author = "Fran{\c{c}}ois Husson and S{\'e}bastien L{\^e} and
J{\'e}r{\^o}me Pag{\`e}s",
title = "Exploratory multivariate analysis by example using
{R}",
publisher = pub-CRC,
address = pub-CRC:adr,
pages = "xii + 228",
year = "2011",
ISBN = "1-4398-3580-2 (hardcover)",
ISBN-13 = "978-1-4398-3580-7 (hardcover)",
LCCN = "QA278 .H87 2011",
bibdate = "Thu Jul 10 10:03:00 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Chapman and Hall/CRC computer science and data
analysis",
abstract = "An introduction to exploratory techniques for
multivariate data analysis, this book covers the key
methodology, including principal components analysis,
correspondence analysis, mixed models and multiple
factor analysis. The authors take a practical approach,
with examples leading the discussion of the methods and
lots of graphics to emphasize visualization. They
present the concepts in the most intuitive way
possible, keeping mathematical content to a minimum or
relegating it to the appendices. The book includes
examples that use real data from a range of scientific
disciplines and implemented using an R package
developed by the authors.",
acknowledgement = ack-nhfb,
subject = "Multivariate analysis; R (Computer program language);
MATHEMATICS / Probability and Statistics / General",
tableofcontents = "1. Principal component analysis (PCA) \\
2. Correspondence analysis (CA) \\
3. Multiple correspondence analysis (MCA) \\
4. Clustering",
}
@Article{Imai:2011:ERP,
author = "Kosuke Imai and Ying Lu and Aaron Strauss",
title = "{{\tt eco}}: {R} Package for Ecological Inference in $
2 \times 2 $ Tables",
journal = j-J-STAT-SOFT,
volume = "42",
number = "5",
pages = "??--??",
month = jun,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Oct 2 07:04:03 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v42/i05",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-02-06; Accepted 2007-06-18",
}
@Article{Jackson:2011:MSM,
author = "Christopher Jackson",
title = "Multi-State Models for Panel Data: The {{\tt msm}}
Package for {R}",
journal = j-J-STAT-SOFT,
volume = "38",
number = "8",
pages = "??--??",
month = jan,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Feb 7 10:00:59 MST 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v38/i08",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-07-21; Accepted 2010-08-18",
}
@Article{Jara:2011:DBS,
author = "Alejandro Jara and Timothy Hanson and Fernando A.
Quintana and Peter M{\"u}ller and Gary L. Rosner",
title = "{{\tt DPpackage}}: {Bayesian} Semi- and Nonparametric
Modeling in {R}",
journal = j-J-STAT-SOFT,
volume = "40",
number = "5",
pages = "??--??",
month = apr,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:22:01 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v40/i05",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-10-28; Accepted 2010-12-27",
}
@Book{Kabacoff:2011:RAD,
author = "Robert Kabacoff",
title = "{R} in action: data analysis and graphics with {R}",
publisher = pub-MANNING,
address = pub-MANNING:adr,
pages = "xxiv + 447",
year = "2011",
ISBN = "1-935182-39-0 (paperback)",
ISBN-13 = "978-1-935182-39-9 (paperback)",
LCCN = "QA276.45.R3 K33 2011",
bibdate = "Thu Jul 10 12:16:29 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
abstract = "R in Action is the first book to present both the R
system and the use cases that make it such a compelling
package for business developers. The book begins by
introducing the R language, including the development
environment. Focusing on practical solutions, the book
also offers a crash course in practical statistics and
covers elegant methods for dealing with messy and
incomplete data using features of R.",
acknowledgement = ack-nhfb,
remark = "Part I: Getting Started \\
1 Introduction To R \\
2 Creating a dataset \\
3 Getting started with graphs \\
4 Basic data management \\
5 Advanced data management \\
Part II: Basic Methods \\
6 Basic graphs \\
6.1 Bar plots \\
6.2 Pie charts \\
6.3 Histograms \\
6.4 Kernel density plots \\
6.5 Box plots \\
6.6 Dot plots \\
6.7 Summary \\
7 Basic statistics \\
7.1 Descriptive statistics \\
7.2 Frequency and contingency tables \\
7.3 Correlations \\
7.4 t-tests \\
7.5 Nonparametric tests of group differences \\
7.6 Visualizing group differences \\
7.7 Summary \\
Part III: Intermediate Methods \\
8 Regression \\
8.1 The many faces of regression \\
8.2 OLS regression \\
8.3 Regression diagnostics \\
8.4 Unusual observations \\
8.5 Corrective measures \\
8.6 Selecting the ``best'' regression model \\
8.7 Taking the analysis further \\
8.8 Summary \\
9 Analysis of variance \\
9.1 A crash course on terminology \\
9.2 Fitting ANOVA models \\
9.3 One-way ANOVA \\
9.4 One-way ANCOVA \\
9.5 Two-way factorial ANOVA \\
9.6 Repeated measures ANOVA \\
9.7 Multivariate analysis of variance (MANOVA) \\
9.8 ANOVA as regression \\
9.9 Summary \\
10 Power analysis \\
10.1 A quick review of hypothesis testing \\
10.2 Implementing power analysis with the pwr package
\\
10.3 Creating power analysis plots \\
10.4 Other packages \\
10.5 Summary \\
11 Intermediate graphs \\
11.1 Scatter plots \\
11.2 Line charts \\
11.3 Correlograms \\
11.4 Mosaic plots \\
11.5 Summary \\
12 Resampling statistics and bootstrapping \\
12.1 Permutation tests \\
12.2 Permutation test with the coin package \\
12.3 Permutation tests with the lmPerm package \\
12.4 Additional comments on permutation tests \\
12.5 Bootstrapping \\
12.6 Bootstrapping with the boot package \\
12.7 Summary \\
Part IV: Advanced Methods \\
13 Generalized linear models \\
13.1 Generalized linear models and the glm() function
\\
13.2 Logistic regression \\
13.3 Poisson regression \\
13.4 Summary \\
14 Principal components and factor analysis \\
14.1 Principal components and factor analysis in R \\
14.2 Principal components \\
14.3 Exploratory factor analysis \\
14.4 Other latent variable models \\
14.5 Summary \\
15 Advanced methods for missing data \\
15.1 Steps in dealing with missing data \\
15.2 Identifying missing values \\
15.3 Exploring missing values patterns \\
15.4 Understanding the sources and impact of missing
data \\
15.5 Rational approaches for dealing with incomplete
data \\
15.6 Complete-case analysis (listwise deletion) \\
15.7 Multiple imputation \\
15.8 Other approaches to missing data \\
15.9 Summary \\
16 Advanced graphics \\
16.1 The four graphic systems in R \\
16.2 The lattice package \\
16.3 The ggplot2 package \\
16.4 Interactive graphs \\
16.5 Summary afterword Into the rabbit hole \\
Appendix A: Graphic user interfaces \\
Appendix B: Customizing the startup environment \\
Appendix C: Exporting data from R \\
Appendix D: Creating publication-quality output \\
Appendix E: Matrix Algebra in R Appendix F: Packages
used in this book \\
Appendix G: Working with large datasets \\
Appendix H: Updating an R installation index.",
subject = "R (Computer program language); Statistics; Data
processing; Graphic methods",
xxaddress = "Shelter Island, NY",
}
@Book{Karian:2011:HFS,
author = "Zaven A. Karian and Edward J. Dudewicz",
title = "Handbook of fitting statistical distributions with
{R}",
publisher = pub-CRC,
address = pub-CRC:adr,
pages = "xlv + 1672",
year = "2011",
ISBN = "1-58488-711-7 (hardcover), 1-58488-712-5 (e-book:
PDF)",
ISBN-13 = "978-1-58488-711-9 (hardcover), 978-1-58488-712-6
(e-book: PDF)",
LCCN = "QA273.6 .K374 2011",
bibdate = "Tue Apr 29 20:39:05 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/probstat2010.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
prodorbis.library.yale.edu:7090/voyager;
z3950.loc.gov:7090/Voyager",
note = "Includes CD-ROM.",
URL = "http://marc.crcnetbase.com/isbn/9781584887126",
acknowledgement = ack-nhfb,
subject = "Distribution (Probability theory); R (Computer program
language)",
tableofcontents = "Part 1. Overview \\
Part 2. The generalized lambda distribution \\
Part 3. Quantile distribution methods \\
Part 4. Other families of distributions \\
Part 5. The generalized bootstrap and Monte Carlo
methods \\
Part 6. Assessment of the quality of fits \\
Part 7. Applications \\
Part 8. Appendices",
}
@Article{Lazar:2011:BRB,
author = "Nicole Lazar",
title = "Book Review: {{\booktitle{Introduction to Probability
Simulation and Gibbs Sampling With R}} by Eric A.
Suess; Bruce E. Trumbo}",
journal = j-TECHNOMETRICS,
volume = "53",
number = "3",
pages = "327--327",
month = aug,
year = "2011",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/23210415",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:45:57 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i23209789;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics2010.bib",
URL = "http://www.jstor.org/stable/23210415",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Article{Li:2011:TRP,
author = "Jiangtian Li and Xiaosong Ma and Srikanth Yoginath and
Guruprasad Kora and Nagiza F. Samatova",
title = "Transparent runtime parallelization of the {R}
scripting language",
journal = j-J-PAR-DIST-COMP,
volume = "71",
number = "2",
pages = "157--168",
month = feb,
year = "2011",
CODEN = "JPDCER",
ISSN = "0743-7315 (print), 1096-0848 (electronic)",
ISSN-L = "0743-7315",
bibdate = "Fri Feb 25 19:11:47 MST 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.sciencedirect.com/science/journal/07437315",
acknowledgement = ack-nhfb,
fjournal = "Journal of Parallel and Distributed Computing",
journal-URL = "http://www.sciencedirect.com/science/journal/07437315",
}
@Article{Linzer:2011:PRP,
author = "Drew A. Linzer and Jeffrey B. Lewis",
title = "{poLCA}: An {R} Package for Polytomous Variable Latent
Class Analysis",
journal = j-J-STAT-SOFT,
volume = "42",
number = "10",
pages = "??--??",
month = jun,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Oct 2 07:04:03 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v42/i10",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-02-15; Accepted 2007-08-02",
}
@Article{Maindonald:2011:SBRd,
author = "John H. Maindonald",
title = "Short Book Review: {{\booktitle{Exploratory
Multivariate Analysis by Example Using R}} by
Fran{\c{c}}ois Husson, S{\'e}bastien L{\^e},
J{\'e}r{\^o}me Pag{\`e}s}",
journal = j-INT-STAT-REV,
volume = "79",
number = "3",
pages = "498--498",
month = dec,
year = "2011",
CODEN = "ISTRDP",
DOI = "http://dx.doi.org/10.1111/j.1751-5823.2011.00159_19.x;
http://dx.doi.org/10.2307/41305079",
ISSN = "0306-7734 (print), 1751-5823 (electronic)",
ISSN-L = "0306-7734",
bibdate = "Wed Jun 18 06:26:16 MDT 2014",
bibsource = "http://www.jstor.org/stable/i40058978;
http://www.math.utah.edu/pub/tex/bib/intstatrev.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstor.org/stable/41305079",
acknowledgement = ack-nhfb,
fjournal = "International Statistical Review = Revue
Internationale de Statistique",
journal-URL = "http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1751-5823;
http://www.jstor.org/journals/03067734.html",
onlinedate = "21 Nov 2011",
}
@Article{Martin:2011:MMC,
author = "Andrew D. Martin and Kevin M. Quinn and Jong Hee
Park",
title = "{MCMCpack}: {Markov} Chain {Monte Carlo} in {R}",
journal = j-J-STAT-SOFT,
volume = "42",
number = "9",
pages = "??--??",
month = jun,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Oct 2 07:04:03 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v42/i09",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-01-15; Accepted 2007-11-24",
}
@Book{Matloff:2011:ARP,
author = "Norman S. Matloff",
title = "The art of {R} programming: tour of statistical
software design",
publisher = pub-NO-STARCH,
address = pub-NO-STARCH:adr,
pages = "xxiii + 373",
year = "2011",
ISBN = "1-59327-384-3",
ISBN-13 = "978-1-59327-384-2",
LCCN = "QA276.4 .M2925 2011",
bibdate = "Thu Jul 10 13:25:57 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
URL = "http://www.loc.gov/catdir/enhancements/fy1205/2011025598-b.html;
http://www.loc.gov/catdir/enhancements/fy1205/2011025598-d.html;
http://www.loc.gov/catdir/enhancements/fy1205/2011025598-t.html",
abstract = "A guide to software development using the R
programming language covers such topics as closures,
recursion, anonymous functions, and debugging
techniques.",
acknowledgement = ack-nhfb,
subject = "Statistics; Data processing; R (Computer program
language)",
tableofcontents = "Introduction \\
Why use R for your statistical work? \\
Whom is this book for? \\
My own background \\
Getting started \\
How to run R \\
A first R session \\
Introduction to functions \\
Preview of some important R data structures \\
Extended example: regression analysis of exam grades
\\
Startup and shutdown \\
Getting help \\
Vectors \\
Scalars, vectors, arrays, and matrices \\
Declarations \\
Recycling \\
Common vector operations \\
Using all() and any() \\
Vectorized operations \\
NA and NULL values \\
Filtering \\
A vectorized if-then-else: the ifelse() function \\
Testing vector equality \\
Vector element names \\
More on c() \\
Matrices and arrays \\
Creating matrices \\
General matrix operations \\
Applying functions to matrix rows and columns \\
Adding and deleting matrix rows and columns \\
More on the vector/matrix distinction \\
Avoiding unintended dimension reduction \\
Naming matrix rows and columns \\
Higher-dimensional arrays \\
Lists \\
Creating lists \\
General list operations \\
Accessing list components and values \\
Applying functions to lists \\
Recursive lists \\
Data frames \\
Creating data frames \\
Other matrix-like operations \\
Merging data frames \\
Applying functions to data frames \\
Factors and tables \\
Factors and levels \\
Common functions used with factors \\
Working with tables \\
Other factor and table-related functions \\
R programming structures \\
Control statements \\
Arithmetic and Boolean operators and values \\
Default values for arguments \\
Return values \\
Functions are objects \\
Environment and scope issues \\
No pointers in R \\
Writing upstairs \\
Recursion \\
Replacement functions \\
Tools for composing function code \\
Writing your own binary operations \\
Anonymous functions \\
Doing math and simulations in R \\
Math functions \\
Functions for statistical distributions \\
Sorting \\
Linear algebra operations on vectors and matrices \\
Set operations \\
Simulation programming in R --Object-oriented
programming \\
S3 classes \\
S4 classes \\
S3 versus S4 \\
Managing your objects \\
Input/output \\
Accessing the keyboard and monitor \\
Reading and writing files \\
Accessing the Internet \\
String manipulation \\
An overview of string-manipulation functions \\
Regular expressions \\
Use of string utilities in the edtdbg debugging tool
\\
Graphics \\
Creating graphs \\
Customizing graphs \\
Saving graphs to files \\
Creating three-dimensional plots \\
Debugging \\
Fundamental principles of debugging \\
Why use a debugging tool? \\
Using R debugging facilities \\
Moving up in the world: more convenient debugging tools
\\
Ensuring consistency in debugging simulation code \\
Syntax and runtime errors \\
Running GDB on R itself \\
Performance enhancement: speed and memory \\
Writing fast R code \\
The dreaded for loop \\
Functional programming and memory issues \\
Using Rprof() to find slow spots in your code \\
Byte code compilation \\
Oh no, the data doesn't fit into memory! \\
Interfacing R to other languages \\
Writing C/C++ functions to be called from R \\
Using R from Python \\
Parallel R \\
The mutual outlinks problem \\
Introducing the snow package \\
Resorting to C \\
General performance considerations \\
Debugging parallel R code \\
Installing R \\
Downloading R from CRAN \\
Installing from a Linux package manager \\
Installing from source \\
Installing and using packages \\
Package basics \\
Loading a package from your hard drive \\
Downloading a package from the Web \\
Listing the functions in a package",
}
@Article{Mebane:2011:GOU,
author = "Walter R. {Mebane, Jr.} and Jasjeet S. Sekhon",
title = "Genetic Optimization Using Derivatives: The {{\tt
rgenoud}} Package for {R}",
journal = j-J-STAT-SOFT,
volume = "42",
number = "11",
pages = "??--??",
month = jun,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Oct 2 07:04:03 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v42/i11",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-02-11; Accepted 2007-11-21",
}
@Article{Molas:2011:HGL,
author = "Marek Molas and Emmanuel Lesaffre",
title = "Hierarchical Generalized Linear Models: The {R}
Package {{\tt HGLMMM}}",
journal = j-J-STAT-SOFT,
volume = "39",
number = "13",
pages = "??--??",
month = mar,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:21:59 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v39/i13",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-03-03; Accepted 2010-12-06",
}
@Article{Monteiro:2011:BRP,
author = "Jo{\~a}o Vitor Dias Monteiro and Sudipto Banerjee and
Gurumurthy Ramachandran",
title = "{B2Z}: {R} Package for {Bayesian} Two-Zone Models",
journal = j-J-STAT-SOFT,
volume = "43",
number = "2",
pages = "??--??",
month = jul,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sat Feb 25 18:33:22 MST 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v43/i02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-06-09; Accepted 2011-05-12",
}
@Article{Mullen:2011:DRP,
author = "Katharine M. Mullen and David Ardia and David L. Gil
and Donald Windover and James Cline",
title = "{{\tt DEoptim}}: An {R} Package for Global
Optimization by Differential Evolution",
journal = j-J-STAT-SOFT,
volume = "40",
number = "6",
pages = "??--??",
month = apr,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:22:01 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v40/i06",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-03-27; Accepted 2011-02-04",
}
@Book{Murrell:2011:RG,
author = "Paul Murrell",
title = "{R} graphics",
publisher = pub-CRC,
address = pub-CRC:adr,
edition = "Second",
pages = "xxvii + 518",
year = "2011",
ISBN = "1-4398-3176-9 (hardcover)",
ISBN-13 = "978-1-4398-3176-2 (hardcover)",
LCCN = "T385 .M9 2011",
bibdate = "Thu Jul 10 08:14:55 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Chapman and Hall/CRC the R series",
acknowledgement = ack-nhfb,
subject = "Computer graphics; R (Computer program language)",
}
@Article{Mwitondi:2011:BCR,
author = "Kassim S. Mwitondi",
title = "{Bayesian computation with R}",
journal = j-J-APPL-STAT,
volume = "38",
number = "10",
pages = "2367--2368",
month = oct,
year = "2011",
CODEN = "????",
DOI = "http://dx.doi.org/10.1080/02664763.2010.484893",
ISSN = "0266-4763 (print), 1360-0532 (electronic)",
ISSN-L = "0266-4763",
bibdate = "Mon Sep 5 18:53:30 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/japplstat.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.tandf.co.uk/journals/routledge/02664763.html",
note = "See \cite{Albert:2009:BCR}.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Applied Statistics",
journal-URL = "http://www.tandfonline.com/loi/cjas20",
onlinedate = "18 Aug 2011",
}
@Article{Nash:2011:UOA,
author = "John C. Nash and Ravi Varadhan",
title = "Unifying Optimization Algorithms to Aid Software
System Users: optimx for {R}",
journal = j-J-STAT-SOFT,
volume = "43",
number = "9",
pages = "??--??",
month = aug,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sat Feb 25 18:33:22 MST 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v43/i09",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-08-12; Accepted 2011-08-05",
}
@Article{Neubauer:2011:BRB,
author = "Dean V. Neubauer",
title = "Book Review: {{\booktitle{Introducing Monte Carlo
Methods With R}} by Christian P. Robert; George
Casella}",
journal = j-TECHNOMETRICS,
volume = "53",
number = "2",
pages = "217--218",
month = may,
year = "2011",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/23209743",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:45:56 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i23209715;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics2010.bib",
URL = "http://www.jstor.org/stable/23209743",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Article{Ng:2011:BRB,
author = "Hon Keung Tony Ng",
title = "Book Review: {{\booktitle{Introduction to Scientific
Programming and Simulation Using R}} by Owen Jones;
Robert Maillardet; Andrew Robinson}",
journal = j-TECHNOMETRICS,
volume = "53",
number = "2",
pages = "213--214",
month = may,
year = "2011",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/23209737",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:45:56 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i23209715;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics2010.bib",
URL = "http://www.jstor.org/stable/23209737",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Article{Nielsen:2011:BRB,
author = "S{\o}ren Feodor Nielsen",
title = "Book Review: {{\booktitle{Introductory time series
with R}}}",
journal = j-J-APPL-STAT,
volume = "38",
number = "10",
pages = "2370--2371",
month = oct,
year = "2011",
CODEN = "????",
DOI = "http://dx.doi.org/10.1080/02664763.2010.517940",
ISSN = "0266-4763 (print), 1360-0532 (electronic)",
ISSN-L = "0266-4763",
bibdate = "Mon Sep 5 18:53:30 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/japplstat.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.tandf.co.uk/journals/routledge/02664763.html",
note = "See \cite{Cowpertwait:2009:ITS}.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Applied Statistics",
journal-URL = "http://www.tandfonline.com/loi/cjas20",
onlinedate = "18 Aug 2011",
}
@Article{OConnell:2011:HSM,
author = "Jared O'Connell and S{\o}ren H{\o}jsgaard",
title = "Hidden Semi {Markov} Models for Multiple Observation
Sequences: The {{\tt mhsmm}} Package for {R}",
journal = j-J-STAT-SOFT,
volume = "39",
number = "4",
pages = "??--??",
month = mar,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:21:59 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v39/i04",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-03-02; Accepted 2010-09-29",
}
@Article{Petris:2011:SSM,
author = "Giovanni Petris and Sonia Petrone",
title = "State Space Models in {R}",
journal = j-J-STAT-SOFT,
volume = "41",
number = "4",
pages = "??--??",
month = may,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:22:03 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v41/i04",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-01-26; Accepted 2010-11-10",
}
@Article{Petrou:2011:OPP,
author = "Savvas Petrou and Terence M. Sloan and Muriel Mewissen
and Thorsten Forster and Michal Piotrowski and Bartosz
Dobrzelecki and Peter Ghazal and Arthur Trew and Jon
Hill",
title = "Optimization of a parallel permutation testing
function for the {SPRINT R} package",
journal = j-CCPE,
volume = "23",
number = "17",
pages = "2258--2268",
day = "10",
month = dec,
year = "2011",
CODEN = "CCPEBO",
DOI = "http://dx.doi.org/10.1002/cpe.1787",
ISSN = "1532-0626 (print), 1532-0634 (electronic)",
ISSN-L = "1532-0626",
bibdate = "Mon Dec 5 10:09:00 MST 2011",
bibsource = "http://www.interscience.wiley.com/jpages/1532-0626;
http://www.math.utah.edu/pub/tex/bib/ccpe.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
fjournal = "Concurrency and Computation: Practice and Experience",
journal-URL = "http://www.interscience.wiley.com/jpages/1532-0626",
keywords = "statistical language R",
onlinedate = "23 Jun 2011",
}
@Article{Plummer:2011:LRC,
author = "Martyn Plummer and Bendix Carstensen",
title = "{Lexis}: An {R} Class for Epidemiological Studies with
Long-Term Follow-Up",
journal = j-J-STAT-SOFT,
volume = "38",
number = "5",
pages = "??--??",
month = jan,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Feb 7 10:00:59 MST 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v38/i05",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-02-09; Accepted 2010-09-16",
}
@Article{Polasek:2011:SBRa,
author = "Wolfgang Polasek",
title = "Short Book Review: {{\booktitle{Using R for Data
Management, Statistical Analysis, and Graphics}} by
Nicholas J. Horton, Ken Kleinman}",
journal = j-INT-STAT-REV,
volume = "79",
number = "2",
pages = "284--285",
month = aug,
year = "2011",
CODEN = "ISTRDP",
DOI = "http://dx.doi.org/10.2307/41305035;
http://dx.doi.org/10.1111/j.1751-5823.2011.00149_11.x",
ISSN = "0306-7734 (print), 1751-5823 (electronic)",
ISSN-L = "0306-7734",
bibdate = "Wed Jun 18 06:26:16 MDT 2014",
bibsource = "http://www.jstor.org/stable/i40058977;
http://www.math.utah.edu/pub/tex/bib/intstatrev.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstor.org/stable/41305035",
acknowledgement = ack-nhfb,
fjournal = "International Statistical Review = Revue
Internationale de Statistique",
journal-URL = "http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1751-5823;
http://www.jstor.org/journals/03067734.html",
onlinedate = "2 Aug 2011",
}
@Article{Poole:2011:SRC,
author = "Keith Poole and Jeffrey B. Lewis and James Lo and
Royce Carroll",
title = "Scaling Roll Call Votes with {{\tt wnominate}} in
{R}",
journal = j-J-STAT-SOFT,
volume = "42",
number = "14",
pages = "??--??",
month = jun,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Oct 2 07:04:03 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v42/i14",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-02-01; Accepted 2007-08-07",
}
@Book{Rasch:2011:OED,
author = "Dieter Rasch and J{\"u}rgen Pilz and Rob Verdooren and
Albrecht Gebhardt",
title = "Optimal experimental design with {R}",
publisher = pub-CRC,
address = pub-CRC:adr,
pages = "xix + 325",
year = "2011",
ISBN = "1-4398-1697-2 (hardcover), 1-4398-1698-0 (e-book)",
ISBN-13 = "978-1-4398-1697-4 (hardcover), 978-1-4398-1698-1
(e-book)",
LCCN = "QA279 .O668 2011",
bibdate = "Thu Jul 10 10:03:59 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
abstract = "Experimental design is often overlooked in the
literature of applied and mathematical statistics:
statistics is taught and understood as merely a
collection of methods for analyzing data. Consequently,
experimenters seldom think about optimal design,
including prerequisites such as the necessary sample
size needed for a precise answer for an experimental
question. Providing a concise introduction to
experimental design theory, Optimal Experimental Design
with R: Introduces the philosophy of experimental
design Provides an easy process for constructing
experimental designs and calculating necessary sample
size using R programs Teaches by example using a custom
made R program package: OPDOE. Consisting of detailed,
data-rich examples, this book introduces experimenters
to the philosophy of experimentation, experimental
design, and data collection. It gives researchers and
statisticians guidance in the construction of optimum
experimental designs using R programs, including sample
size calculations, hypothesis testing, and confidence
estimation. A final chapter of in-depth theoretical
details is included for interested mathematical
statisticians.",
acknowledgement = ack-nhfb,
subject = "Experimental design; R (Computer program language)",
tableofcontents = "I. Determining the minimal size of an experiment
for given precision \\
2. Sample size determination to completely randomise
designs \\
3. Size of experiments in analysis of variance models
\\
4. Sample size determination in model II of regression
analysis \\
5. Sequential designs \\
II. Construction of optimal designs \\
6.Constructing balanced incomplete block designs \\
7.Constructing fractional factorial designs \\
8. Exact optimal designs and sample sizes in model of
regression analysis \\
III. Special designs \\
9. Second order designs \\
10. Mixture designs \\
A. Theoretical background",
}
@Book{Rasch:2011:SPU,
author = "Dieter Rasch and Klaus D. Kubinger and Takuya
Yanagida",
title = "Statistics in psychology using {R} and {SPSS}",
publisher = pub-WILEY,
address = pub-WILEY:adr,
pages = "????",
year = "2011",
ISBN = "0-470-97124-X",
ISBN-13 = "978-0-470-97124-6",
LCCN = "BF39 .S7863 2011",
bibdate = "Mon Jan 16 12:52:49 MST 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
acknowledgement = ack-nhfb,
subject = "Psychometrics; SPSS (Computer file); methods;
Statistics as Topic; Software",
tableofcontents = "Concept of the book \\
Measuring in psychology \\
Psychology: an empirical science \\
Definition: character, chance, experiment, and survey
\\
Numerical and graphical data analysis \\
Probability and distribution \\
Assumptions: random sampling and randomization \\
One sample from one population \\
Two samples from two populations \\
Samples from more than two populations \\
Regression and correlation \\
One sample from one population \\
Samples from more than one population \\
Model generation \\
Theory-generating procedures",
}
@Book{RDCT:2011:IRN,
author = "{R Development Core Team}",
title = "An Introduction to {R}: Notes on {R}: {A} Programming
Environment for Data Analysis and Graphics: Version
2.13.0 (2011-04-13)",
publisher = "????",
address = "????",
pages = "iv + 103",
year = "2011",
ISBN = "3-900051-12-7",
ISBN-13 = "978-3-900051-12-9",
LCCN = "????",
bibdate = "Thu Jun 02 07:05:33 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://cran.r-project.org/doc/manuals/R-intro.pdf",
acknowledgement = ack-nhfb,
}
@Book{RDCT:2011:RDI,
author = "{R Development Core Team}",
title = "{R} Data Import\slash Export: Version 2.13.0
(2011-04-13)",
publisher = "????",
address = "????",
pages = "ii + 35",
year = "2011",
ISBN = "3-900051-10-0",
ISBN-13 = "978-3-900051-10-5",
LCCN = "????",
bibdate = "Thu Jun 02 07:05:33 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://cran.r-project.org/doc/manuals/R-data.pdf",
acknowledgement = ack-nhfb,
}
@Book{RDCT:2011:RIA,
author = "{R Development Core Team}",
title = "{R} Installation and Administration: Version 2.13.0
(2011-04-13)",
publisher = "????",
address = "????",
pages = "iii + 66",
year = "2011",
ISBN = "3-900051-09-7",
ISBN-13 = "978-3-900051-09-9",
LCCN = "????",
bibdate = "Thu Jun 02 07:05:33 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://cran.r-project.org/doc/manuals/R-admin.pdf",
acknowledgement = ack-nhfb,
}
@Book{RDCT:2011:RIV,
author = "{R Development Core Team}",
title = "{R} Internals: Version 2.13.0 (2011-04-13)",
publisher = "????",
address = "????",
pages = "ii + 58",
year = "2011",
ISBN = "3-900051-14-3",
ISBN-13 = "978-3-900051-14-3",
LCCN = "????",
bibdate = "Thu Jun 02 07:05:33 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://cran.r-project.org/doc/manuals/R-ints.pdf",
acknowledgement = ack-nhfb,
}
@Book{RDCT:2011:RLD,
author = "{R Development Core Team}",
title = "{R} Language Definition: Version 2.13.0 (2011-04-13)",
publisher = "????",
address = "????",
pages = "iii + 62",
year = "2011",
ISBN = "3-900051-13-5",
ISBN-13 = "978-3-900051-13-6",
LCCN = "????",
bibdate = "Thu Jun 02 07:05:33 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://cran.r-project.org/doc/manuals/R-lang.pdf",
acknowledgement = ack-nhfb,
}
@Book{RDCT:2011:RLE,
author = "{R Development Core Team}",
title = "{R}: {A} Language and Environment for Statistical
Computing: Reference Index",
publisher = "????",
address = "????",
pages = "xlix + 3396",
year = "2011",
ISBN = "3-900051-07-0",
ISBN-13 = "978-3-900051-07-5",
LCCN = "????",
bibdate = "Thu Jun 02 07:05:33 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://cran.r-project.org/doc/manuals/fullrefman.pdf",
acknowledgement = ack-nhfb,
}
@Book{RDCT:2011:WRE,
author = "{R Development Core Team}",
title = "Writing {R} Extensions: Version 2.13.0 (2011-04-13)",
publisher = "????",
address = "????",
pages = "iv + 167",
year = "2011",
ISBN = "3-900051-11-9",
ISBN-13 = "978-3-900051-11-2",
LCCN = "????",
bibdate = "Thu Jun 02 07:05:33 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://cran.r-project.org/doc/manuals/R-exts.pdf",
acknowledgement = ack-nhfb,
}
@Article{Richardson:2011:SBRc,
author = "Alice Richardson",
title = "Short Book Review: {{\booktitle{Multiple Comparisons
Using R}} by Frank Bretz, Torsten Hothorn, Peter
Westfall}",
journal = j-INT-STAT-REV,
volume = "79",
number = "2",
pages = "297--297",
month = aug,
year = "2011",
CODEN = "ISTRDP",
DOI = "http://dx.doi.org/10.1111/j.1751-5823.2011.00149_23.x;
http://dx.doi.org/10.2307/41305047",
ISSN = "0306-7734 (print), 1751-5823 (electronic)",
ISSN-L = "0306-7734",
bibdate = "Wed Jun 18 06:26:16 MDT 2014",
bibsource = "http://www.jstor.org/stable/i40058977;
http://www.math.utah.edu/pub/tex/bib/intstatrev.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstor.org/stable/41305047",
acknowledgement = ack-nhfb,
fjournal = "International Statistical Review = Revue
Internationale de Statistique",
journal-URL = "http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1751-5823;
http://www.jstor.org/journals/03067734.html",
onlinedate = "2 Aug 2011",
}
@Book{Robinson:2011:IBO,
author = "Peter N. (Peter Nicholas) Robinson and Sebastian
Bauer",
title = "Introduction to bio-ontologies",
publisher = pub-TAYLOR-FRANCIS,
address = pub-TAYLOR-FRANCIS:adr,
pages = "xxvii + 488",
year = "2011",
ISBN = "1-4398-3665-5 (hardcover)",
ISBN-13 = "978-1-4398-3665-1 (hardcover)",
LCCN = "QH324.2 .R618 2011",
bibdate = "Tue May 7 11:15:28 MDT 2013",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/sigact.bib;
z3950.loc.gov:7090/Voyager",
series = "Chapman and Hall/CRC mathematical and computational
biology series",
acknowledgement = ack-nhfb,
subject = "Bioinformatics; Ontologies (Information retrieval)",
tableofcontents = "Ontologies and applications of ontologies in
biomedicine \\
Mathematical logic and inference \\
Probability theory and statistics for bio-ontologies
\\
Ontology language \\
The gene ontology \\
Upper-level ontologies \\
A selective survey of bio-ontologies \\
Overrepresentation analysis \\
Model-based approaches to GO analysis \\
Semantic similarity \\
Frequency-aware Bayesian network searches in attribute
ontologies \\
Inference in gene ontology \\
RDFS semantics and inference \\
Inference in OWL ontologies \\
Algorithmic foundations of computational inference \\
SPARQL \\
Appendixes \\
A. An overview of R \\
B. Information content and entropy \\
C. W3C standards: XML, URIs, and RDF \\
D. W3C standards: OWL",
}
@Article{Roelstraete:2011:FRP,
author = "Bjorn Roelstraete and Yves Rosseel",
title = "{FIAR}: An {R} Package for Analyzing Functional
Integration in the Brain",
journal = j-J-STAT-SOFT,
volume = "44",
number = "13",
pages = "??--??",
month = oct,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sat Feb 25 18:33:24 MST 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v44/i13",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-11-13; Accepted 2011-06-21",
}
@Book{Ruppert:2011:SDA,
author = "David Ruppert",
title = "Statistics and data analysis for financial
engineering",
publisher = pub-SV,
address = pub-SV:adr,
pages = "xxii + 638",
year = "2011",
ISBN = "1-4419-7786-4",
ISBN-13 = "978-1-4419-7786-1",
LCCN = "HG176.7 .R87 2011",
bibdate = "Fri Jul 25 06:52:48 MDT 2014",
bibsource = "z3950.loc.gov:7090/Voyager",
series = "Springer texts in statistics",
URL = "http://www.loc.gov/catdir/enhancements/fy1201/2011282136-b.html;
http://www.loc.gov/catdir/enhancements/fy1201/2011282136-d.html;
http://www.loc.gov/catdir/enhancements/fy1201/2011282136-t.html",
abstract = "Financial engineers have access to enormous quantities
of data but need powerful methods for extracting
quantitative information, particularly about volatility
and risks. Key features of this textbook are:
illustration of concepts with financial markets and
economic data, R Labs with real-data exercises, and
integration of graphical and analytic methods for
modeling and diagnosing modeling errors. Despite some
overlap with the author's undergraduate textbook
Statistics and Finance: An Introduction, this book
differs from that earlier volume in several important
aspects: it is graduate-level; computations and
graphics are done in R; and many advanced topics are
covered, for example, multivariate distributions,
copulas, Bayesian computations, VaR and expected
shortfall, and cointegration. The prerequisites are
basic statistics and probability, matrices and linear
algebra, and calculus. Some exposure to finance is
helpful.",
acknowledgement = ack-nhfb,
author-dates = "1948--",
keywords = "R (statistical software); S-Plus (statistical
software)",
subject = "Financial engineering; Statistical methods; Finance",
tableofcontents = "Introduction \\
Returns \\
Fixed income securities \\
Exploratory data anlysis \\
Modeling univariate distributions \\
Resampling \\
Multivariate statistical models \\
Copulas \\
Time series models: basics \\
Time series models: further topics \\
Portfolio theory \\
Regression: basics \\
Regression: troubleshooting \\
Regression: advanced topics \\
Cointegration \\
The capital asset pricing model \\
Factor models and principal components \\
GARCH models \\
Risk management \\
Bayesian data analysis and MCMC \\
Nonparametric regression and splines",
}
@Article{Sanchez:2011:BRB,
author = "Juana Sanchez",
title = "Book Review: {{\booktitle{Hidden Markov Models for
Time Series --- An Introduction Using R}}}",
journal = j-J-STAT-SOFT,
volume = "43",
number = "BR-4",
pages = "??--??",
month = oct,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sat Feb 25 18:33:22 MST 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v43/b04",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-10-04; Accepted 2011-10-04",
}
@Article{Sauter:2011:BRB,
author = "Roger M. Sauter",
title = "Book Review: {{\booktitle{R for SAS and SPSS Users}}
(1st ed) by Robert A. Muenchen}",
journal = j-TECHNOMETRICS,
volume = "53",
number = "1",
pages = "101--101",
month = feb,
year = "2011",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/40997301",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:45:55 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i40045084;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics2010.bib",
URL = "http://www.jstor.org/stable/40997301",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Article{Scharpf:2011:URP,
author = "Robert B. Scharpf and Rafael A. Irizarry and Matthew
E. Ritchie and Benilton Carvalho and Ingo Ruczinski",
title = "Using the {R} Package {{\tt crlmm}} for Genotyping and
Copy Number Estimation",
journal = j-J-STAT-SOFT,
volume = "40",
number = "12",
pages = "??--??",
month = may,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:22:01 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v40/i12",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-09-09; Accepted 2011-04-18",
}
@Article{Scheike:2011:ACR,
author = "Thomas H. Scheike and Mei-Jie Zhang",
title = "Analyzing Competing Risk Data Using the {R} {{\tt
timereg}} Package",
journal = j-J-STAT-SOFT,
volume = "38",
number = "2",
pages = "??--??",
month = jan,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Feb 7 10:00:59 MST 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v38/i02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-05-25; Accepted 2010-06-22",
}
@Article{Scheipl:2011:SBV,
author = "Fabian Scheipl",
title = "{spikeSlabGAM}: {Bayesian} Variable Selection, Model
Choice and Regularization for Generalized Additive
Mixed Models in {R}",
journal = j-J-STAT-SOFT,
volume = "43",
number = "14",
pages = "??--??",
month = sep,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sat Feb 25 18:33:22 MST 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v43/i14",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-11-23; Accepted 2011-08-31",
}
@Article{Sekhon:2011:MPS,
author = "Jasjeet S. Sekhon",
title = "Multivariate and Propensity Score Matching Software
with Automated Balance Optimization: The Matching
package for {R}",
journal = j-J-STAT-SOFT,
volume = "42",
number = "7",
pages = "??--??",
month = jun,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sun Oct 2 07:04:03 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v42/i07",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2007-02-07; Accepted 2007-06-16",
}
@Article{Sevcikova:2011:BRP,
author = "Hana Sevc{\'\i}kov{\'a} and Leontine Alkema and Adrian
Raftery",
title = "{bayesTFR}: An {R} package for Probabilistic
Projections of the Total Fertility Rate",
journal = j-J-STAT-SOFT,
volume = "43",
number = "1",
pages = "??--??",
month = jul,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sat Feb 25 18:33:22 MST 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v43/i01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-10-03; Accepted 2011-07-06",
}
@Article{Shang:2011:BRB,
author = "Han Lin Shang",
title = "Book Review: {{\booktitle{Dynamic linear models with
R}}}",
journal = j-J-APPL-STAT,
volume = "38",
number = "10",
pages = "2369--2370",
month = oct,
year = "2011",
CODEN = "????",
DOI = "http://dx.doi.org/10.1080/02664763.2010.517938",
ISSN = "0266-4763 (print), 1360-0532 (electronic)",
ISSN-L = "0266-4763",
bibdate = "Mon Sep 5 18:53:30 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/japplstat.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.tandf.co.uk/journals/routledge/02664763.html",
note = "See \cite{Petris:2009:DLM}.",
acknowledgement = ack-nhfb,
fjournal = "Journal of Applied Statistics",
journal-URL = "http://www.tandfonline.com/loi/cjas20",
onlinedate = "18 Aug 2011",
}
@Article{Shentu:2011:BRB,
author = "Yue Shentu",
title = "Book Review: {{\booktitle{Clinical Trial Data Analysis
Using R}}}",
journal = j-J-STAT-SOFT,
volume = "43",
number = "BR-1",
pages = "??--??",
month = jul,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sat Feb 25 18:33:22 MST 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v43/b01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-07-18; Accepted 2011-07-18",
}
@Book{Shumway:2011:TSA,
author = "Robert H. Shumway and David S. Stoffer",
title = "Time series analysis and its applications: with {R}
examples",
publisher = pub-SV,
address = pub-SV:adr,
edition = "Third",
pages = "xi + 596",
year = "2011",
DOI = "http://dx.doi.org/10.1007/978-1-4419-7865-3",
ISBN = "1-4419-7865-8 (e-book)",
ISBN-13 = "978-1-4419-7865-3 (e-book)",
LCCN = "QA280 .S58 2011",
bibdate = "Tue Sep 6 08:59:49 MDT 2011",
bibsource = "fsz3950.oclc.org:210/WorldCat;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
series = "Springer texts in statistics",
URL = "http://rave.ohiolink.edu/ebooks/ebc/978144197865",
acknowledgement = ack-nhfb,
subject = "Time-series analysis; Data processing",
}
@Article{Su:2011:MID,
author = "Yu-Sung Su and Andrew Gelman and Jennifer Hill and
Masanao Yajima",
title = "Multiple Imputation with Diagnostics (mi) in {R}:
Opening Windows into the Black Box",
journal = j-J-STAT-SOFT,
volume = "45",
number = "2",
pages = "??--??",
month = dec,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sat Feb 25 18:33:25 MST 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v45/i02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-06-15; Accepted 2011-05-30",
}
@Article{Tabelow:2011:SPM,
author = "Karsten Tabelow and J{\"o}rg Polzehl",
title = "Statistical Parametric Maps for Functional {MRI}
Experiments in {R}: The Package {\tt fmri}",
journal = j-J-STAT-SOFT,
volume = "44",
number = "11",
pages = "??--??",
month = oct,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sat Feb 25 18:33:24 MST 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v44/i11",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-11-10; Accepted 2011-06-15",
}
@Article{Tabelow:2011:SVM,
author = "Karsten Tabelow and Brandon Whitcher",
title = "Special Volume on Magnetic Resonance Imaging in {R}",
journal = j-J-STAT-SOFT,
volume = "44",
number = "1",
pages = "??--??",
month = oct,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sat Feb 25 18:33:24 MST 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v44/i01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-09-29; Accepted 2011-09-29",
}
@Article{Taylor:2011:RPW,
author = "Julian Taylor and Arunas Verbyla",
title = "{R} Package wgaim: {QTL} Analysis in Bi-Parental
Populations Using Linear Mixed Models",
journal = j-J-STAT-SOFT,
volume = "40",
number = "7",
pages = "??--??",
month = apr,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:22:01 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v40/i07",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-07-13; Accepted 2011-02-25",
}
@Book{Teetor:2011:RC,
author = "Paul Teetor",
title = "{R} cookbook",
publisher = pub-ORA,
address = pub-ORA:adr,
pages = "xviii + 413",
year = "2011",
ISBN = "0-596-80915-8",
ISBN-13 = "978-0-596-80915-7",
LCCN = "QA276.45.R3 T44 2011",
bibdate = "Thu Jul 10 10:10:42 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
URL = "http://www.loc.gov/catdir/enhancements/fy1113/2011282768-b.html;
http://www.loc.gov/catdir/enhancements/fy1113/2011282768-d.html;
http://www.loc.gov/catdir/enhancements/fy1113/2011282768-t.html",
acknowledgement = ack-nhfb,
author-dates = "1954--",
subject = "R (Computer program language); Mathematical
statistics; Graphic methods; Data processing;
Statistics; Multiple comparisons (Statistics)",
tableofcontents = "1. Getting Started and Getting Help \\
2. Some Basics \\
3. Navigating the Software \\
4. Input and Output \\
5. Data Structures \\
6. Data Transformations \\
7. Strings and Dates \\
8. Probability \\
9. General Statistics \\
10. Graphics \\
11. Linear Regression and ANOVA \\
12. Useful Tricks \\
13. Beyond Basic Numerics and Statistics \\
14. Time Series Analysis",
}
@Article{Tusell:2011:KFR,
author = "Fernando Tusell",
title = "{Kalman} Filtering in {R}",
journal = j-J-STAT-SOFT,
volume = "39",
number = "2",
pages = "??--??",
month = mar,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:21:59 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v39/i02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-01-12; Accepted 2010-08-17",
}
@Article{Unwin:2011:SBRa,
author = "Antony Unwin",
title = "Short Book Review: {{\booktitle{Graphics for
Statistics and Data Analysis with R}} by Kevin J.
Keen}",
journal = j-INT-STAT-REV,
volume = "79",
number = "1",
pages = "114--114",
month = apr,
year = "2011",
CODEN = "ISTRDP",
DOI = "http://dx.doi.org/10.1111/j.1751-5823.2011.00134_1.x;
http://dx.doi.org/10.2307/41306167",
ISSN = "0306-7734 (print), 1751-5823 (electronic)",
ISSN-L = "0306-7734",
bibdate = "Wed Jun 18 06:26:15 MDT 2014",
bibsource = "http://www.jstor.org/stable/i40059031;
http://www.math.utah.edu/pub/tex/bib/intstatrev.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstor.org/stable/41306167",
acknowledgement = ack-nhfb,
fjournal = "International Statistical Review = Revue
Internationale de Statistique",
journal-URL = "http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1751-5823;
http://www.jstor.org/journals/03067734.html",
onlinedate = "3 Apr 2011",
}
@Article{vanBuuren:2011:MMI,
author = "Stef van Buuren and Karin Groothuis-Oudshoorn",
title = "{\tt mice}: {Multivariate Imputation by Chained
Equations} in {R}",
journal = j-J-STAT-SOFT,
volume = "45",
number = "3",
pages = "??--??",
month = dec,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sat Feb 25 18:33:25 MST 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v45/i03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-09-01; Accepted 2011-05-30",
}
@Article{vanderWal:2011:IRP,
author = "Willem M. van der Wal and Ronald B. Geskus",
title = "{\tt ipw}: An {R} Package for Inverse Probability
Weighting",
journal = j-J-STAT-SOFT,
volume = "43",
number = "13",
pages = "??--??",
month = sep,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sat Feb 25 18:33:22 MST 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v43/i13",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-04-07; Accepted 2011-06-13",
}
@Article{Wang:2011:DEM,
author = "Xiao-Feng Wang and Bin Wang",
title = "Deconvolution Estimation in Measurement Error Models:
The {R} Package {{\tt decon}}",
journal = j-J-STAT-SOFT,
volume = "39",
number = "10",
pages = "??--??",
month = mar,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:21:59 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v39/i10",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-03-21; Accepted 2010-11-04",
}
@Article{Wang:2011:SRP,
author = "Ji-Ping Wang",
title = "{SPECIES}: An {R} Package for Species Richness
Estimation",
journal = j-J-STAT-SOFT,
volume = "40",
number = "9",
pages = "??--??",
month = apr,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:22:01 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v40/i09",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-03-11; Accepted 2011-03-27",
}
@Article{Welvaert:2011:NRP,
author = "Marijke Welvaert and Joke Durnez and Beatrijs
Moerkerke and Geert Berdoolaege and Yves Rosseel",
title = "{{\tt neuRosim}}: An {R} Package for Generating {fMRI}
Data",
journal = j-J-STAT-SOFT,
volume = "44",
number = "10",
pages = "??--??",
month = oct,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sat Feb 25 18:33:24 MST 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v44/i10",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-10-31; Accepted 2011-06-21",
}
@Article{Whitcher:2011:QAD,
author = "Brandon Whitcher and Volker J. Schmid",
title = "Quantitative Analysis of Dynamic Contrast-Enhanced and
Diffusion-Weighted Magnetic Resonance Imaging for
Oncology in {R}",
journal = j-J-STAT-SOFT,
volume = "44",
number = "5",
pages = "??--??",
month = oct,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sat Feb 25 18:33:24 MST 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v44/i05",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-10-20; Accepted 2011-06-17",
}
@Article{Whitcher:2011:WDN,
author = "Brandon Whitcher and Volker J. Schmid and Andrew
Thorton",
title = "Working with the {DICOM} and {NIfTI} Data Standards in
{R}",
journal = j-J-STAT-SOFT,
volume = "44",
number = "6",
pages = "??--??",
month = oct,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Sat Feb 25 18:33:24 MST 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v44/i06",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-10-25; Accepted 2011-06-07",
}
@Article{Wickham:2011:TRP,
author = "Hadley Wickham and Dianne Cook and Heike Hofmann and
Andreas Buja",
title = "{{\tt tourr}}: An {R} Package for Exploring
Multivariate Data with Projections",
journal = j-J-STAT-SOFT,
volume = "40",
number = "2",
pages = "??--??",
month = apr,
year = "2011",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Fri May 13 18:22:01 MDT 2011",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v40/i02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-01-31; Accepted 2010-10-07",
}
@Book{Williams:2011:DMR,
author = "Graham J. Williams",
title = "Data mining with {Rattle} and {R}: the art of
excavating data for knowledge discovery",
publisher = pub-SV,
address = pub-SV:adr,
pages = "xx + 374",
year = "2011",
ISBN = "1-4419-9889-6 (paperback), 1-4419-9890-X (e-bib)",
ISBN-13 = "978-1-4419-9889-7 (paperback), 978-1-4419-9890-3
(e-bib)",
LCCN = "QA76.9.D343 W556 2011",
bibdate = "Thu Jul 10 12:50:53 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Use R!",
abstract = "Data mining is the art and science of intelligent data
analysis. By building knowledge from information, data
mining adds considerable value to the ever increasing
stores of electronic data that abound today. In
performing data mining many decisions need to be made
regarding the choice of methodology, the choice of
data, the choice of tools, and the choice of
algorithms. Throughout this book the reader is
introduced to the basic concepts and some of the more
popular algorithms of data mining. With a focus on the
hands-on-end-to-end process for data mining. Williams
guides the reader through various capabilities of the
easy to use, free, and open source Rattle Data Mining
Software built on the sophisticated R Statistical
Software.",
acknowledgement = ack-nhfb,
subject = "Data mining; R (Computer program language); Data
mining; R (Computer program language)",
tableofcontents = "Introduction \\
Getting Started \\
Working with Data \\
Loading Data \\
Exploring Data \\
Interactive Graphics \\
Transforming Data \\
Descriptive and Predictive Analytics \\
Cluster Analysis \\
Association Analysis \\
Decision Trees \\
Random Forests \\
Boosting \\
Support Vector Machines \\
Model Performance Evaluation \\
Deployment",
xxtableofcontents = "Explorations \\
Building models \\
Delivering performance \\
Appendices",
}
@Book{Zieffler:2011:CGR,
author = "Andrew Zieffler and Jeffrey Harring and Jeffrey D.
Long",
title = "Comparing groups: randomization and bootstrap methods
using {R}",
publisher = pub-WILEY,
address = pub-WILEY:adr,
pages = "xxxii + 298",
year = "2011",
ISBN = "0-470-62169-9 (hardcover)",
ISBN-13 = "978-0-470-62169-1 (hardcover)",
LCCN = "QA276.8 .Z53 2011",
bibdate = "Thu Jul 10 12:57:12 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
abstract = "This book, written by three behavioral scientists for
other behavioral scientists, addresses common issues in
statistical analysis for the behavioral and educational
sciences. Modern Statistical and Computing Methods for
the Behavioral and Educational Sciences using R
emphasizes the direct link between scientific research
questions and data analysis. Purposeful attention is
paid to the integration of design, statistical
methodology, and computation to propose answers to
specific research questions. Furthermore, practical
suggestions for the analysis and presentation of
results, in prose, tables and/or figures, are included.
Optional sections for each chapter include
methodological extensions for readers desiring
additional technical details. Rather than focus on
mathematical calculations like so many other
introductory texts in the behavioral sciences, the
authors focus on conceptual explanations and the use of
statistical computing. Statistical computing is an
integral part of statistical work, and to support
student learning in this area, examples using the R
computer program are provided throughout the book.
Rather than relegate examples to the end of chapters,
the authors interweave computer examples with the
narrative of the book. Topical coverage includes an
introduction to R, data exploration of one variable,
data exploration of multivariate data - comparing two
groups and many groups, permutation and randomization
tests, the independent samples t-Test, the Bootstrap
test, interval estimates and effect sizes, power, and
dependent samples.",
acknowledgement = ack-nhfb,
author-dates = "1974--",
subject = "Bootstrap (Statistics); Random data (Statistics);
Psychology; Data processing; R (Computer program
language); Distribution (Probability theory); SOCIAL
SCIENCE / Statistics",
tableofcontents = "Front Matter \\
An Introduction to R \\
Data Representation and Preparation \\
Data Exploration: One Variable \\
Exploration of Multivariate Data: Comparing two Groups
\\
Exploration of Multivariate Data: Comparing Many Groups
\\
Randomization and Permutation Tests \\
Bootstrap Tests \\
Philosophical Considerations \\
Bootstrap Intervals and Effect Sizes \\
Dependent Samples \\
Planned Contrasts \\
Unplanned Contrasts \\
References",
}
@Article{Adams:2012:BRB,
author = "Wayne Adams and Mark Anderson",
title = "Book Review: {{\booktitle{Optimal Experimental Design
with R}} by Dieter Rasch; Jurgen Pilz; L. R. Verdooren;
Albrecht Gebhardt}",
journal = j-TECHNOMETRICS,
volume = "54",
number = "2",
pages = "203--203",
month = may,
year = "2012",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/41714877",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:46:01 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i40080562;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics2010.bib",
URL = "http://www.jstor.org/stable/41714877",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Book{Adler:2012:RN,
author = "Joseph Adler",
title = "{R} in a Nutshell",
publisher = pub-ORA,
address = pub-ORA:adr,
edition = "Second",
pages = "xix + 699",
year = "2012",
ISBN = "1-4493-1208-X (paperback)",
ISBN-13 = "978-1-4493-1208-4 (paperback)",
LCCN = "????",
bibdate = "Wed Nov 21 15:44:54 MST 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/ora.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
library.ox.ac.uk:210/ADVANCE; z3950.gbv.de:20011/gvk",
price = "EUR 41.00",
acknowledgement = ack-nhfb,
subject = "R (Computer program language); Mathematical
statistics; Data processing",
}
@Article{Adragni:2012:GRP,
author = "Kofi Placid Adragni and R. Dennis Cook and Seongho
Wu",
title = "{GrassmannOptim}: An {R} Package for {Grassmann}
Manifold Optimization",
journal = j-J-STAT-SOFT,
volume = "50",
number = "5",
pages = "??--??",
month = jul,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Oct 29 18:54:11 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v50/i05",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-02-09; Accepted 2012-05-08",
}
@Article{Aizaki:2012:CSB,
author = "Hideo Aizaki",
title = "Code Snippet: Basic Functions for Supporting an
Implementation of Choice Experiments in {R}",
journal = j-J-STAT-SOFT,
volume = "50",
number = "CS-2",
pages = "??--??",
month = sep,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Oct 29 18:54:11 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v50/c02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-05-04; Accepted 2012-08-22",
}
@Book{Albert:2012:RE,
author = "Jim Albert and Maria L. Rizzo",
title = "{R} by example",
publisher = pub-SV,
address = pub-SV:adr,
pages = "xiii + 359",
year = "2012",
ISBN = "1-4614-1364-8, 1-4614-1365-6 (e-book)",
ISBN-13 = "978-1-4614-1364-6, 978-1-4614-1365-3 (e-book)",
LCCN = "QA276.45.R3 A53 2012",
bibdate = "Thu Jul 10 13:00:44 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Use R!",
abstract = "R by Example is an example-based introduction to the
statistical computing environment that does not assume
any previous familiarity with R or other software
packages. R functions are presented in the context of
interesting applications with real data. The purpose of
this book is to illustrate a range of statistical and
probability computations using R for people who are
learning, teaching, or using statistics. Specifically,
this book is written for users who have covered at
least the equivalent of (or are currently studying)
undergraduate level calculus-based courses in
statistics.",
acknowledgement = ack-nhfb,
author-dates = "1953--",
subject = "R (Computer program language); Mathematical
statistics; Data processing",
tableofcontents = "R by Example \\
Preface \\
Contents \\
Notation and Abbreviations \\
1 Introduction \\
1.1 Getting Started \\
1.1.1 Preliminaries \\
1.1.2 Basic operations \\
1.1.3 R Scripts \\
1.1.4 The R Help System \\
1.2 Functions \\
1.3 Vectors and Matrices \\
1.4 Data Frames \\
1.4.1 Introduction to data frames \\
Display all data \\
Display top of data \\
Sample size and dimension \\
Names of variables \\
Structure of the data \\
Missing values \\
1.4.2 Working with a data frame \\
Compute summary statistics \\
Extract data from a data frame \\
Extract a variable using \\
Histograms \\
Attaching a data frame \\
Scatterplots and correlations \\
1.5 Importing Data \\
1.5.1 Entering data manually \\
1.5.2 Importing data from a text file \\
1.12 The simplest way to import spreadsheet data is to
save it in {.csv} \\
1.5.3 Data available on the internet \\
1.6 Packages \\
Searching for data or methods in packages \\
1.7 The R Workspace \\
1.8 Options and Resources \\
The options function \\
Graphical parameters: par \\
1.13 There are so many possible parameters to graphics
functions, that \\
Graph history \\
Other resources \\
Task Views \\
External resources \\
The R Graph Gallery and R Graphical Manual \\
1.9 Reports and Reproducible Research \\
Exercises \\
2 Quantitative Data \\
2.1 Introduction \\
2.2 Bivariate Data: Two Quantitative Variables \\
2.2.1 Exploring the data \\
Body and brain size of mammals \\
2.1 In the display above it is not obvious whether
mammals is a matrix \\
Some basic statistics and plots \\
2.2 We have seen that mammals consists of two numeric
variables, body \\
2.2.2 Correlation and regression line \\
2.3 A fitted line was added to the scatterplot in
Figure 2.3 by the code \\
2.2.3 Analysis of bivariate data by group \\
IQ of twins \\
2.2.4 Conditional plots \\
2.3 Multivariate Data: Several Quantitative Variables
\\
2.3.1 Exploring the data \\
2.3.2 Missing values \\
2.3.3 Summarize by group \\
2.3.4 Summarize pairs of variables \\
2.3.5 Identifying missing values \\
2.4 Time Series Data \\
2.5 Integer Data: Draft Lottery \\
2.6 Sample Means and the Central Limit Theorem \\
2.7 Special Topics \\
2.7.1 Adding a new variable \\
2.7.2 Which observation is the maximum? \\
2.7.3 Sorting a data frame \\
2.7.4 Distances between points \\
2.7.5 Quick look at cluster analysis \\
Exercises \\
3 Categorical data \\
3.1 Introduction \\
3.1.1 Tabulating and plotting categorical data \\
3.1.2 Character vectors and factors \\
3.2 Chi-square Goodness-of-Fit Test \\
3.3 Relating Two Categorical Variables \\
3.3.1 Introduction \\
3.3.2 Frequency tables and graphs \\
3.3.3 Contingency tables \\
3.4 Association Patterns in Contingency Tables \\
3.4.1 Constructing a contingency table \\
3.4.2 Graphing patterns of association \\
3.5 Testing Independence by a Chi-square Test \\
Exercises \\
4 Presentation Graphics \\
4.1 Introduction \\
4.2 Labeling the Axes and Adding a Title \\
4.3 Changing the Plot Type and Plotting Symbol \\
4.4 Overlaying Lines and Line Types \\
4.5 Using Different Colors for Points and Lines \\
Exploratory Data Analysis \\
Basic Inference Models \\
Regression \\
Analysis of Variance I \\
Analysis of Variance II \\
Randomization tests \\
Simulation Experiments \\
Bayesian Modeling \\
Monte Carlo Methods",
}
@Article{Anonymous:2012:BRBj,
author = "Anonymous",
title = "Book Review: {{\booktitle{Analysis of Phylogenetics
and Evolution With R}} (2nd ed.) by Emmanuel Paradis}",
journal = j-TECHNOMETRICS,
volume = "54",
number = "3",
pages = "330--331",
month = aug,
year = "2012",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/41714914",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:46:02 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i40080563;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics2010.bib",
URL = "http://www.jstor.org/stable/41714914",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Article{Anonymous:2012:BRBm,
author = "Anonymous",
title = "Book Review: {{\booktitle{Statistics and Data Analysis
for Microarrays Using R and Bioconductor, 2nd Edition}}
by Sorin Dr{\"a}ghici}",
journal = j-TECHNOMETRICS,
volume = "54",
number = "4",
pages = "445--446",
month = nov,
year = "2012",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/41714939",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:46:03 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i40080564;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics2010.bib",
URL = "http://www.jstor.org/stable/41714939",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Article{Austenfeld:2012:GUI,
author = "Marcel Austenfeld and Wolfram Beyschlag",
title = "A Graphical User Interface for {R} in a Rich Client
Platform for Ecological Modeling",
journal = j-J-STAT-SOFT,
volume = "49",
number = "4",
pages = "??--??",
month = jun,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Oct 29 18:54:10 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v49/i04",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-01-05; Accepted 2012-02-20",
}
@Article{Basto:2012:SRM,
author = "M{\'a}rio Basto and Jos{\'e} Manuel Pereira",
title = "An {SPSS} {R}-Menu for Ordinal Factor Analysis",
journal = j-J-STAT-SOFT,
volume = "46",
number = "4",
pages = "??--??",
month = jan,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Mar 28 07:47:54 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v46/i04",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-01-24; Accepted 2011-11-19",
}
@Article{Beh:2012:EMA,
author = "Eric J. Beh",
title = "Exploratory multivariate analysis by example using
{R}",
journal = j-J-APPL-STAT,
volume = "39",
number = "6",
pages = "1381--1382",
month = jun,
year = "2012",
CODEN = "????",
DOI = "http://dx.doi.org/10.1080/02664763.2012.657409",
ISSN = "0266-4763 (print), 1360-0532 (electronic)",
ISSN-L = "0266-4763",
bibdate = "Sun Nov 4 11:01:38 MST 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/japplstat.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.tandf.co.uk/journals/routledge/02664763.html",
acknowledgement = ack-nhfb,
fjournal = "Journal of Applied Statistics",
journal-URL = "http://www.tandfonline.com/loi/cjas20",
onlinedate = "14 Feb 2012",
}
@Article{Berge:2012:HRP,
author = "Laurent Berg{\'e} and Charles Bouveyron and
St{\'e}phane Girard",
title = "{HDclassif}: An {R} Package for Model-Based Clustering
and Discriminant Analysis of High-Dimensional Data",
journal = j-J-STAT-SOFT,
volume = "46",
number = "6",
pages = "??--??",
month = jan,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Mar 28 07:47:54 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v46/i06",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-12-02; Accepted 2011-11-19",
}
@Article{Bergmeir:2012:NNR,
author = "Christoph Bergmeir and Jos{\'e} M. Ben{\'\i}tez",
title = "Neural Networks in {R} Using the {Stuttgart Neural
Network Simulator}: {RSNNS}",
journal = j-J-STAT-SOFT,
volume = "46",
number = "7",
pages = "??--??",
month = jan,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Mar 28 07:47:54 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v46/i07",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-12-20; Accepted 2011-10-03",
}
@Article{Biecek:2012:RPB,
author = "Przemyslaw Biecek and Ewa Szczurek and Martin Vingron
and Jerzy Tiuryn",
title = "The {R} Package {{\tt bgmm}}: Mixture Modeling with
Uncertain Knowledge",
journal = j-J-STAT-SOFT,
volume = "47",
number = "3",
pages = "??--??",
month = apr,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Oct 29 18:54:07 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v47/i03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-02-15; Accepted 2012-01-16",
}
@Article{Boshnakov:2012:URD,
author = "Georgi N. Boshnakov",
title = "Using {R} for data management, statistical analysis,
and graphics",
journal = j-J-APPL-STAT,
volume = "39",
number = "6",
pages = "1382--1383",
month = jun,
year = "2012",
CODEN = "????",
DOI = "http://dx.doi.org/10.1080/02664763.2012.657412",
ISSN = "0266-4763 (print), 1360-0532 (electronic)",
ISSN-L = "0266-4763",
bibdate = "Sun Nov 4 11:01:38 MST 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/japplstat.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.tandf.co.uk/journals/routledge/02664763.html",
acknowledgement = ack-nhfb,
fjournal = "Journal of Applied Statistics",
journal-URL = "http://www.tandfonline.com/loi/cjas20",
onlinedate = "02 Feb 2012",
}
@Article{Burr:2012:BRP,
author = "Deborah Burr",
title = "{{\tt bspmma}}: An {R} Package for {Bayesian}
Semiparametric Models for Meta-Analysis",
journal = j-J-STAT-SOFT,
volume = "50",
number = "4",
pages = "??--??",
month = jul,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Oct 29 18:54:11 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v50/i04",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-08-13; Accepted 2012-05-05",
}
@Article{Camarda:2012:MRP,
author = "Carlo G. Camarda",
title = "{MortalitySmooth}: An {R} Package for Smoothing
{Poisson} Counts with {P}-Splines",
journal = j-J-STAT-SOFT,
volume = "50",
number = "1",
pages = "??--??",
month = jul,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Oct 29 18:54:11 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v50/i01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-06-24; Accepted 2012-03-13",
}
@Article{Chalmers:2012:MMI,
author = "R. Philip Chalmers",
title = "{{\tt mirt}}: a Multidimensional Item Response Theory
Package for the {R} Environment",
journal = j-J-STAT-SOFT,
volume = "48",
number = "6",
pages = "??--??",
month = may,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Oct 29 18:54:09 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v48/i06",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-08-24; Accepted 2012-02-08",
}
@Article{Chavent:2012:CRP,
author = "Marie Chavent and Vanessa Kuentz-Simonet and
Beno{\^\i}t Liquet and J{\'e}r{\^o}me Saracco",
title = "{ClustOfVar}: An {R} Package for the Clustering of
Variables",
journal = j-J-STAT-SOFT,
volume = "50",
number = "13",
pages = "??--??",
month = sep,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Oct 29 18:54:11 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v50/i13",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-11-04; Accepted 2012-08-22",
}
@Article{Cheng:2012:IDM,
author = "Ya-Shan Cheng and Chien-Yu Peng",
title = "Integrated Degradation Models in {R} Using {iDEMO}",
journal = j-J-STAT-SOFT,
volume = "49",
number = "2",
pages = "??--??",
month = jun,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Oct 29 18:54:10 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v49/i02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-12-31; Accepted 2011-06-29",
}
@Article{Clifford:2012:VPD,
author = "David Clifford and Glenn Stone",
title = "Variable Penalty Dynamic Time Warping Code for
Aligning Mass Spectrometry Chromatograms in {R}",
journal = j-J-STAT-SOFT,
volume = "47",
number = "8",
pages = "??--??",
month = apr,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Oct 29 18:54:07 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v47/i08",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-11-17; Accepted 2012-04-19",
}
@Book{Cornillon:2012:RS,
author = "Pierre-Andr{\'e} Cornillon and Arnaud Guyader and
Fran{\c{c}}ois Husson and Nicolas J{\'e}gou and Julie
Josse and Maela Kloareg and Eric Matzner-L{\o}ber and
Laurent Rouvi{\`e}re",
title = "{R} for statistics",
publisher = pub-CRC,
address = pub-CRC:adr,
pages = "xiv + 306",
year = "2012",
ISBN = "1-4398-8145-6 (paperback)",
ISBN-13 = "978-1-4398-8145-3 (paperback)",
LCCN = "QA276.45.R3 S7413 2012",
bibdate = "Thu Jul 10 13:09:23 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
URL = "http://www.crcpress.com/product/isbn/9781439881453",
abstract = "This book is the English adaptation of the second
edition of the book \booktitle{Statistiques avec R}
which was published in 2008 and was a great success in
the French-speaking world. In this version, a number of
worked examples have been supplemented and new examples
have been added. We hope that readers will enjoy using
this book for reference when working with R. This book
is aimed at statisticians in the widest sense, that is
to say, all those working with datasets: science
students, biologists, economists, etc. All statistical
studies depend on vast quantities of information, and
computerised tools are therefore becoming more and more
essential. There are currently a wide variety of
software packages which meet these requirements. Here
we have opted for R, which has the triple advantage of
being free, comprehensive, and its use is booming.
However, no prior experience of the software is
required. This work aims to be accessible and useful
both for novices and experts alike. This book is
organised into two main sections: the rst part focuses
on the R software and the way it works, and the second
on the implementation of traditional statistical
methods with R. In order to render them as independent
as possible, a brief chapter o ers extra help getting
started (chapter 5, a Quick Start with R) and acts as a
transition: it will help those readers who are more
interested in statistics than in software to be
operational more quickly''",
acknowledgement = ack-nhfb,
subject = "R (Computer program language); Mathematical
statistics; Data processing",
tableofcontents = "An Overview of R \\
Main Concepts \\
Installing R \\
Work Session \\
Help \\
R Objects \\
Functions \\
Packages \\
Exercises \\
\\
Preparing Data \\
Reading Data from File \\
Exporting Results \\
Manipulating Variables \\
Manipulating Individuals \\
Concatenating Data Tables \\
Cross-Tabulation \\
Exercises \\
\\
R Graphics \\
Conventional Graphical Functions \\
Graphical Functions with lattice \\
Exercises \\
\\
Making Programs with R \\
Control Flows \\
Predefined Functions \\
Creating a Function \\
Exercises \\
\\
Statistical Methods \\
Introduction to the Statistical Methods \\
\\
A Quick Start with R \\
Installing R \\
Opening and Closing R \\
The Command Prompt \\
Attribution, Objects, and Function \\
Selection \\
Other \\
Rcmdr Package \\
Importing (or Inputting) Data \\
Graphs \\
Statistical Analysis \\
\\
Hypothesis Test \\
Confidence Intervals for a Mean \\
Chi-Square Test of Independence \\
Comparison of Two Means \\
Testing Conformity of a Proportion \\
Comparing Several Proportions \\
The Power of a Test \\
\\
Regression \\
Simple Linear Regression \\
Multiple Linear Regression \\
Partial Least Squares (PLS) Regression \\
\\
Analysis of Variance and Covariance \\
One-Way Analysis of Variance \\
Multi-Way Analysis of Variance with Interaction \\
Analysis of Covariance \\
\\
Classification \\
Linear Discriminant Analysis \\
Logistic Regression \\
Decision Tree \\
\\
Exploratory Multivariate Analysis \\
Principal Component Analysis \\
Correspondence Analysis \\
Multiple Correspondence Analysis \\
\\
Clustering \\
Ascending Hierarchical Clustering \\
The k-Means Method \\
\\
Appendix \\
The Most Useful Functions \\
Writing a Formula for the Models \\
The Rcmdr Package \\
The FactoMineR Package \\
Answers to the Exercises",
}
@Book{Cornillon:2012:SAR,
author = "Pierre-Andr{\'e} Cornillon and Arnaud Guyader and
Fran{\c{c}}ois Husson and Nicolas J{\'e}gou and Julie
Josse and Maela Kloareg and Eric Matzner-L{\o}ber and
Laurent Rouvi{\`e}re",
title = "Statistiques avec {R}",
publisher = "Presses universitaires de Rennes",
address = "Rennes, France",
edition = "Third",
pages = "v + 296",
year = "2012",
ISBN = "2-7535-1992-7 (paperback)",
ISBN-13 = "978-2-7535-1992-3 (paperback)",
ISSN = "1295-1765",
LCCN = "QA276.45R3 C67.2012",
bibdate = "Thu Jul 10 13:10:39 MDT 2014",
bibsource = "fsz3950.oclc.org:210/WorldCat;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
series = "Pratique de la statistique",
URL = "http://catalogue.bnf.fr/ark:/12148/cb42674494g",
acknowledgement = ack-nhfb,
subject = "Statistique math{\'e}matique; Informatique.; R
(logiciel); R (logiciel); R (Langage de programmation);
Statistique; Informatique; Logiciels; R (Langage de
programmation); Statistique.; Logiciels.; Donn{\'e}es
statistiques.; Graphiques.; Programmation
informatique.; Analyse statistique.; Logiciel libre
(Open source)",
}
@Book{Crawley:2012:RB,
author = "Michael J. Crawley",
title = "The {R} book",
publisher = pub-WILEY,
address = pub-WILEY:adr,
edition = "Second",
pages = "xxiv + 1051",
year = "2012",
ISBN = "0-470-97392-7 (hardback)",
ISBN-13 = "978-0-470-97392-9 (hardback)",
LCCN = "QA276.45.R3 C73 2013",
bibdate = "Wed Mar 5 08:32:29 MST 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/japplstat.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
abstract = "Hugely successful and popular text presenting an
extensive and comprehensive guide for all R users The R
language is recognized as one of the most powerful and
flexible statistical software packages, enabling users
to apply many statistical techniques that would be
impossible without such software to help implement such
large data sets. R has become an essential tool for
understanding and carrying out research. This edition:
Features full colour text and extensive graphics
throughout. Introduces a clear structure with numbered
section headings to help readers locate information
more efficiently. Looks at the evolution of R over the
past five years. Features a new chapter on Bayesian
Analysis and Meta-Analysis. Presents a fully revised
and updated bibliography and reference section. Is
supported by an accompanying website allowing examples
from the text to be run by the user. Praise for the
first edition: ``\ldots{}if you are an R user or
wannabe R user, this text is the one that should be on
your shelf. The breadth of topics covered is
unsurpassed when it comes to texts on data analysis in
R.'' (The American Statistician, August 2008)' The
High-level software language of R is setting standards
in quantitative analysis. And now anybody can get to
grips with it thanks to The R Book\ldots{}'
(Professional Pensions, July 2007).\par
This edition introduces the advantages of the R
environment, in a user-friendly format, to beginners
and intermediate users in a range of disciplines, from
science and engineering to medicine and economics",
acknowledgement = ack-nhfb,
subject = "R (Computer program language); Mathematical
statistics; Data processing; MATHEMATICS / Probability
and Statistics / General.",
tableofcontents = "Preface \\
1: Getting Started \\
2: Essentials of the R Language \\
3: Data Input \\
4: Dataframes \\
5: Graphics \\
6: Tables \\
7: Mathematics \\
8: Classical Tests \\
9: Statistical Modelling \\
10: Regression \\
11: Analysis of Variance \\
12: Analysis of Covariance \\
13: Generalized Linear Models \\
14: Count Data \\
15: Count Data in Tables \\
16: Proportion Data \\
17: Binary Response Variables \\
18: Generalized Additive Models \\
19: Mixed-Effects Models \\
20: Non-linear Regression \\
21: Meta-analysis \\
22: Bayesian statistics \\
23: Tree Models \\
24: Time Series Analysis \\
25: Multivariate Statistics \\
26: Spatial Statistics \\
27: Survival Analysis \\
28: Simulation Models \\
29: Changing the Look of Graphics",
}
@Article{Cunningham:2012:SGM,
author = "J. Kelly Cunningham",
title = "Should {{\em S\/}} Get More Press?",
journal = j-AMER-STAT,
volume = "66",
number = "4",
pages = "237--237",
year = "2012",
CODEN = "ASTAAJ",
DOI = "http://dx.doi.org/10.1080/00031305.2012.736915",
ISSN = "0003-1305 (print), 1537-2731 (electronic)",
ISSN-L = "0003-1305",
bibdate = "Tue Apr 30 09:17:45 MDT 2013",
bibsource = "http://www.math.utah.edu/pub/tex/bib/amstat2010.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.tandfonline.com/toc/utas20/66/4",
acknowledgement = ack-nhfb,
fjournal = "The American Statistician",
journal-URL = "http://www.tandfonline.com/loi/utas20",
}
@Book{deVries:2012:RDb,
author = "Andrie de Vries and Joris Meys",
title = "{R} for dummies",
publisher = pub-WILEY,
address = pub-WILEY:adr,
pages = "xviii + 387",
year = "2012",
ISBN = "1-119-96284-6 (paperback), 1-119-96312-5 (e-book),
1-119-96313-3 (e-book), 1-119-96314-1 (e-book)",
ISBN-13 = "978-1-119-96284-7 (paperback), 978-1-119-96312-7
(e-book), 978-1-119-96313-4 (e-book), 978-1-119-96314-1
(e-book)",
LCCN = "QA276.45.R3 V75 2012",
bibdate = "Thu Jul 10 12:27:42 MDT 2014",
bibsource = "fsz3950.oclc.org:210/WorldCat;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
series = "For dummies",
abstract = "With more than two million users, R is the open-source
programming language standard for data analysis and
statistical modeling. R is packed with powerful
programming capabilities, but learning to use R in the
real world can be overwhelming for even the most
seasoned statisticians. This easy-to-follow guide
explains how to use R for data processing and
statistical analysis, and then, shows you how to
present your data using compelling and informative
graphics. You'll gain practical experience using R in a
variety of settings and delve deeper into R's
feature-rich toolset. Includes tips for the initial
installation of R; Demonstrates how to easily perform
calculations on vectors, arrays, and lists of data;
Shows how to effectively visualize data using R's
powerful graphics packages; Gives pointers on how to
find, install, and use add-on packages created by the R
community; Provides tips on getting additional help
from R mailing lists and websites. Whether you're just
starting out with statistical analysis or are a
procedural programming pro, R For Dummies is the book
you need to get the most out of R.",
acknowledgement = ack-nhfb,
subject = "R (Computer program language); R (Langage de
programmation); Statistics; Data processing;
Statistique; Informatique; R (Computer program
language); Data processing.",
tableofcontents = "R For Dummies \\
About the Authors \\
Dedication \\
Authors' Acknowledgments \\
Contents at a Glance \\
Table of Contents \\
Introduction \\
About This Book \\
Conventions Used in This Book \\
What You're Not to Read \\
Foolish Assumptions \\
How This Book Is Organized \\
Icons Used in This Book \\
Where to Go from Here \\
Part I: R You Ready? \\
1: Introducing R: The Big Picture \\
Recognizing the Benefits of Using R \\
Looking At Some of the Unique Features of R \\
2: Exploring R \\
Working with a Code Editor \\
Starting Your First R Session \\
Sourcing a Script \\
Navigating the Workspace \\
3: The Fundamentals of R Using the Full Power of
Functions \\
Keeping Your Code Readable \\
Getting from Base R to More \\
Part II: Getting Down to Work in R \\
4: Getting Started with Arithmetic \\
Working with Numbers, Infinity, and Missing Values \\
Organizing Data in Vectors \\
Getting Values in and out of Vectors \\
Working with Logical Vectors \\
Powering Up Your Math with Vector Functions \\
5: Getting Started with Reading and Writing \\
Using Character Vectors for Text Data \\
Manipulating Text \\
Factoring in Factors \\
6: Going on a Date with R \\
Working with Dates \\
Presenting Dates in Different Formats Adding Time
Information to Dates \\
Formatting Dates and Times \\
Performing Operations on Dates and Times \\
7: Working in More Dimensions \\
Adding a Second Dimension \\
Using the Indices \\
Naming Matrix Rows and Columns \\
Calculating with Matrices \\
Adding More Dimensions \\
Combining Different Types of Values in a Data Frame \\
Manipulating Values in a Data Frame \\
Combining Different Objects in a List \\
Part III: Coding in R \\
8: Putting the Fun in Functions \\
Moving from Scripts to Functions \\
Using Arguments the Smart Way \\
Coping with Scoping \\
Dispatching to a Method 9: Controlling the Logical Flow
\\
Making Choices with if Statements \\
Doing Something Else with an if \ldots{} else Statement
\\
Vectorizing Choices \\
Making Multiple Choices \\
Looping Through Values \\
Looping without Loops: Meeting the Apply Family \\
10: Debugging Your Code \\
Knowing What to Look For \\
Reading Errors and Warnings \\
Going Bug Hunting \\
Generating Your Own Messages \\
Recognizing the Mistakes You're Sure to Make \\
11: Getting Help \\
Finding Information in the R Help Files \\
Searching the Web for Help with R \\
Getting Involved in the R Community \\
Making a Minimal Reproducible Example \\
Part IV: Making the Data Talk \\
12: Getting Data into and out of R \\
Getting Data into R \\
Getting Your Data out of R \\
Working with Files and Folders \\
13: Manipulating and Processing Data \\
Deciding on the Most Appropriate Data Structure \\
Creating Subsets of Your Data \\
Adding Calculated Fields to Data \\
Combining and Merging Data Sets \\
Sorting and Ordering Data \\
Traversing Your Data with the Apply Functions \\
Getting to Know the Formula Interface \\
Whipping Your Data into Shape \\
14: Summarizing Data \\
Starting with the Right Data",
}
@Book{Draghici:2012:SDA,
author = "Sorin Dr{\u{a}}ghici",
title = "Statistics and data analysis for microarrays using {R}
and {Bioconductor}",
publisher = pub-CRC,
address = pub-CRC:adr,
pages = "xlviii + 1042",
year = "2012",
ISBN = "1-4398-0975-5 (hardback)",
ISBN-13 = "978-1-4398-0975-4 (hardback)",
LCCN = "QP624.5.D726 D74 2012",
bibdate = "Thu Nov 15 17:17:12 MST 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Chapman and Hall/CRC mathematical and computational
biology",
acknowledgement = ack-nhfb,
subject = "DNA microarrays; Statistical methods.; Mathematical
statistics; Data processing; R (Computer program
language); Bioconductor (Computer file); SCIENCE /
Biotechnology; MATHEMATICS / Probability and Statistics
/ General; SCIENCE / Life Sciences / Biology /
General",
}
@Article{Eddelbuettel:2012:BRBa,
author = "Dirk Eddelbuettel",
title = "Book Review: {{\booktitle{R in Action}}}",
journal = j-J-STAT-SOFT,
volume = "46",
number = "BR-2",
pages = "??--??",
month = feb,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Mar 28 07:47:54 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v46/b02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2012-02-21; Accepted 2012-02-21",
}
@Article{Eddelbuettel:2012:BRBb,
author = "Dirk Eddelbuettel",
title = "Book Review: {{\booktitle{R for Dummies}}}",
journal = j-J-STAT-SOFT,
volume = "50",
number = "BR-1",
pages = "??--??",
month = aug,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Oct 29 18:54:11 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v50/b01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2012-08-08; Accepted 2012-08-08",
}
@Book{Ekstrom:2012:RP,
author = "Claus Thorn Ekstr{\o}m",
title = "The {R} primer",
publisher = "CRC Press/Taylor and Francis",
address = "Boca Raton, FL, USA",
pages = "xii + 287",
year = "2012",
ISBN = "1-4398-6206-0 (hardcover)",
ISBN-13 = "978-1-4398-6206-3 (hardcover)",
LCCN = "QA276.45.R3 E37 2012",
bibdate = "Thu Jul 10 12:32:23 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
acknowledgement = ack-nhfb,
author-dates = "1971--",
subject = "R (Computer program language); Mathematical
statistics; Data processing",
tableofcontents = "1. Importing data \\
Reading spreadsheets \\
Importing data from other statistical software programs
\\
Exporting data \\
2. Manipulating data \\
Working with data frames \\
Factors \\
Transforming variables \\
3. Statistical analyses \\
Descriptive statistics \\
Linear models \\
Generalized linear models \\
Methods for analysis of repeated measurements \\
Specific methods \\
Model validation \\
Contingency tables \\
Agreement \\
4. Multivariate methods \\
Resampling statistics and bootstrapping \\
Robust statistics \\
Non parametric methods \\
Survival analysis \\
4. Graphics \\
High level plots \\
More advanced graphics \\
Working with graphics \\
5. R \\
Getting information \\
R packages \\
The R workspace \\
Bibliography \\
Index",
}
@Article{Er:2012:MGL,
author = "Sebnem Er",
title = "Multivariate generalized linear models using {R}",
journal = j-J-APPL-STAT,
volume = "39",
number = "8",
pages = "1851--??",
month = aug,
year = "2012",
CODEN = "????",
DOI = "http://dx.doi.org/10.1080/02664763.2012.681563",
ISSN = "0266-4763 (print), 1360-0532 (electronic)",
ISSN-L = "0266-4763",
bibdate = "Sun Nov 4 11:01:39 MST 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/japplstat.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.tandf.co.uk/journals/routledge/02664763.html",
acknowledgement = ack-nhfb,
fjournal = "Journal of Applied Statistics",
journal-URL = "http://www.tandfonline.com/loi/cjas20",
onlinedate = "23 Apr 2012",
}
@Book{Eubank:2012:SCC,
author = "Randall L. Eubank and Ana Kupresanin",
title = "Statistical computing in {C++} and {R}",
publisher = pub-CRC,
address = pub-CRC:adr,
pages = "xv + 540",
year = "2012",
ISBN = "1-4200-6650-1 (hardcover)",
ISBN-13 = "978-1-4200-6650-0 (hardcover)",
LCCN = "QA276.4 .E87 2012",
bibdate = "Thu Jul 10 13:05:53 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Chapman and Hall/CRC the R series",
abstract = "When one looks at a book with `statistical computing'
in the title, the expectation is most likely for a
treatment of the topic that has close ties to numerical
analysis. There are many texts written from this
perspective that provide valuable resources for those
who are actively involved in the solution of computing
problems that arise in statistics. The presentation in
the present text represents a departure from this
classical emphasis in that it concentrates on the
writing of code rather than the development and study
of algorithms, per se. The goal is to provide a
treatment of statistical computing that lays a
foundation for original code development in a research
environment. The advancement of statistical methodology
is now inextricably linked to the use of computers. New
methodological ideas must be translated into usable
code and then numerically evaluated relative to
competing procedures. As a result, many statisticians
expend significant amounts of their creative energy
while sitting in front of a computer monitor. The end
products from the vast majority of these efforts are
unlikely to be reflected in changes to core aspects of
numerical methods or computer hardware. Nonetheless,
they are modern statisticians that are (often very)
involved in computing. This book is written with that
particular audience in mind. What does a modern
statistician need to know about computing? Our belief
is that they need to understand at least the basic
principles of algorithmic thinking. The translation of
a mathematical problem into its computational analog
(or analogs) is a skill that must be learned, like any
other, by actively solving relevant problems.",
acknowledgement = ack-nhfb,
author-dates = "1952--",
subject = "Statistics; Data processing; C++ (Computer program
language); R (Computer program language); MATHEMATICS /
Probability and Statistics / General.",
tableofcontents = "1.1. Programming paradigms \\
1.2. Object-oriented programming \\
1.3. What lies ahead \\
2.1. Introduction \\
2.2. Storage in C++ \\
2.3. Integers \\
2.4. Floating-point representation \\
2.5. Errors \\
2.6. Computing a sample variance \\
2.7. Storage in R \\
2.8. Exercises \\
3.1. Introduction \\
3.2. Variables and scope \\
3.3. Arithmetic and logical operators \\
3.4. Control structures \\
3.5. Using arrays and pointers \\
3.6. Functions \\
3.7. Classes, objects and methods \\
3.8. Miscellaneous topics \\
3.8.1. Structs \\
3.8.2. The this pointer \\
3.8.3.const correctness \\
3.8.4. Forward references \\
3.8.5. Strings \\
3.8.6. Namespaces \\
3.8.7. Handling errors \\
3.8.8. Timing a program \\
3.9. Matrix and vector classes \\
3.10. Input, output and templates \\
3.11. Function templates \\
3.12. Exercises \\
4.1. Introduction \\
4.2. Congruential methods \\
4.3. Lehmer type generators in C++ \\
4.4. An FM2 class \\
4.5. Other generation methods \\
4.6. Nonuniform generation \\
4.7. Generating random normals \\
4.8. Generating random numbers in R \\
4.9. Using the R Standalone Math Library \\
4.10. Exercises \\
5.1. Introduction \\
5.2. File input and output \\
5.3. Classes, methods and namespaces \\
5.4. Writing R functions \\
5.5. Avoiding loops in R \\
5.6. An example \\
5.7. Using C/C++ code in R \\
5.8. Exercises \\
6.1. Introduction \\
6.2. Creating a new class \\
6.3. Generic methods \\
6.4. An example \\
6.5. Exercises \\
7.1. Introduction \\
7.2. Solving linear equations \\
7.2.1. Solving triangular systems \\
7.2.2. Gaussian elimination \\
7.2.3. Cholesky decomposition \\
7.2.4. Banded matrices \\
7.2.5. An application: linear smoothing splines \\
7.2.6. Banded matrices via inheritance \\
7.3. Eigenvalues and eigenvectors \\
7.4. Singular value decomposition \\
7.5. Least squares \\
7.6. The Template Numerical Toolkit \\
7.7. Exercises \\
8.1. Introduction \\
8.2. Function objects \\
8.3. Golden section \\
8.3.1. Dealing with multiple minima \\
8.3.2. An application: linear smoothing splines
revisited \\
8.4. Newton's method \\
8.5. Maximum likelihood \\
8.6. Random search \\
8.7. Exercises \\
9.1. Introduction \\
9.2. ADT dictionary \\
9.2.1. Dynamic arrays and quicksort \\
9.2.2. Linked lists and mergesort \\
9.2.3. Stacks and queues \\
9.2.4. Hash tables \\
9.3. ADT priority queue \\
9.3.1. Heaps \\
9.3.2. A simple heap in C++ \\
9.4. ADT ordered set \\
9.4.1. A simple C++ binary search tree \\
9.4.2. Balancing binary trees \\
9.5. Pointer arithmetic, aerators and templates \\
9.5.1. Iterators \\
9.5.2. A linked list template class \\
9.6. Exercises \\
10.1. Introduction \\
10.2. Container basics \\
10.3. Vector and deque \\
10.3.1. Streaming data \\
10.3.2. Flexible data input \\
10.3.3. Guess5 revisited \\
10.4. The C++ list container \\
10.4.1. An example \\
10.4.2. A chaining hash table \\
10.5. Queues \\
10.6. The map and set containers \\
10.7. Algorithm basics \\
10.8. Exercises \\
11.1. Introduction \\
11.2. OpenMP \\
11.3. Basic MPI commands for C++ \\
11.4. Parallel processing in R \\
11.5. Parallel random number generation \\
11.6. Exercises \\
A.1. Getting around and finding things \\
A.2. Seeing what's there \\
A.3. Creating and destroying things \\
A.4. Things that are running and how to stop them \\
B.1. R as a calculator \\
B.2. R as a graphics engine \\
B.3. R for statistical analysis \\
C.1. Pseudo-random numbers \\
C.2. Hash tables \\
C.3. Tuples",
}
@Book{Falissard:2012:AQD,
author = "Bruno Falissard",
title = "Analysis of questionnaire data with {R}",
publisher = pub-CRC,
address = pub-CRC:adr,
pages = "ix + 269",
year = "2012",
ISBN = "1-4398-1766-9 (hardcover), 1-4398-1767-7",
ISBN-13 = "978-1-4398-1766-7 (hardcover), 978-1-4398-1767-4",
LCCN = "QA276.45.R3 F35 2012",
bibdate = "Thu Jul 10 12:30:46 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
abstract = "While theoretical statistics relies primarily on
mathematics and hypothetical situations, statistical
practice is a translation of a question formulated by a
researcher into a series of variables linked by a
statistical tool. As with written material, there are
almost always differences between the meaning of the
original text and translated text. Additionally, many
versions can be suggested, each with their advantages
and disadvantages. Analysis of Questionnaire Data with
R translates certain classic research questions into
statistical formulations. As indicated in the title,
the syntax of these statistical formulations is based
on the well-known R language, chosen for its
popularity, simplicity, and power of its structure.
Although syntax is vital, understanding the semantics
is the real challenge of any good translation. In this
book, the semantics of theoretical-to-practical
translation emerges progressively from examples and
experience, and occasionally from mathematical
considerations. Sometimes the interpretation of a
result is not clear, and there is no statistical tool
really suited to the question at hand. Sometimes data
sets contain errors, inconsistencies between answers,
or missing data. More often, available statistical
tools are not formally appropriate for the given
situation, making it difficult to assess to what extent
this slight inadequacy affects the interpretation of
results. Analysis of Questionnaire Data with R tackles
these and other common challenges in the practice of
statistics.",
acknowledgement = ack-nhfb,
subject = "Questionnaires; Data processing; R (Computer program
language)",
tableofcontents = "1. Introduction \\
2. Description of responses \\
3. Description of relationships between variables \\
4. Confidence intervals and statistical tests of
hypothesis \\
5. Introduction to linear, logistic, Poisson and other
regression models \\
6. About statistical modelling \\
7. Principles for the validation of a composite score
\\
8. Introduction to structural equation modelling \\
9. Introduction to data manipulation using R",
}
@Article{Febrero-Bande:2012:SCF,
author = "Manuel Febrero-Bande and Manuel Oviedo de la Fuente",
title = "Statistical Computing in Functional Data Analysis: The
{R} Package {{\tt fda.usc}}",
journal = j-J-STAT-SOFT,
volume = "51",
number = "4",
pages = "??--??",
month = oct,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Oct 29 18:54:13 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v51/i04",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-04-27; Accepted 2012-09-21",
}
@Article{Fellows:2012:DDA,
author = "Ian Fellows",
title = "{Deducer}: a Data Analysis {GUI} for {R}",
journal = j-J-STAT-SOFT,
volume = "49",
number = "8",
pages = "??--??",
month = jun,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Oct 29 18:54:10 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v49/i08",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-02-28; Accepted 2011-09-08",
}
@Article{Ferguson:2012:MRP,
author = "Nicole Ferguson and Somnath Datta and Guy Brock",
title = "{msSurv}: An {R} Package for Nonparametric Estimation
of Multistate Models",
journal = j-J-STAT-SOFT,
volume = "50",
number = "14",
pages = "??--??",
month = sep,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Oct 29 18:54:11 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v50/i14",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-02-08; Accepted 2012-08-22",
}
@Article{Fieberg:2012:EPA,
author = "John R. Fieberg",
title = "Estimating Population Abundance Using Sightability
Models: {R} {SightabilityModel} Package",
journal = j-J-STAT-SOFT,
volume = "51",
number = "9",
pages = "??--??",
month = nov,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Tue Apr 30 10:32:05 MDT 2013",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v51/i09",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-10-17; Accepted 2012-08-07",
}
@Book{Field:2012:DSU,
author = "Andy P. Field and Jeremy Miles and Zo{\"e} Field",
title = "Discovering statistics using {R}",
publisher = "Sage",
address = "London, UK",
pages = "xxxiv + 957",
year = "2012",
ISBN = "1-4462-0045-0 (hardcover), 1-4462-0046-9",
ISBN-13 = "978-1-4462-0045-2 (hardcover), 978-1-4462-0046-9",
LCCN = "HA32 .F537 2012",
bibdate = "Thu Jul 10 13:15:47 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
abstract = "Hot on the heels of the award-winning and best selling
\booktitle{Discovering Statistics Using SPSS} Third
Edition, Andy Field has teamed up with Jeremy Miles
(co-author of \booktitle{Discovering Statistics Using
SAS}) to write \booktitle{Discovering Statistics Using
R}. Keeping the uniquely humorous and self-depreciating
style that has made students across the world fall in
love with Andy Field's books, \booktitle{Discovering
Statistics Using R} takes students on a journey of
statistical discovery using the freeware R, a free,
flexible and dynamically changing software tool for
data analysis that is becoming increasingly popular
across the social and behavioral sciences throughout
the world. The journey begins by explaining basic
statistical and research concepts before a guided tour
of the R software environment. Next the importance of
exploring and graphing data will be discovered, before
moving onto statistical tests that are the foundations
of the rest of the book (for e.g. correlation and
regression). Readers will then stride confidently into
intermediate level analyses such as ANOVA, before
ending their journey with advanced techniques such as
MANOVA and multilevel models. Although there is enough
theory to help the reader gain the necessary conceptual
understanding of what they're doing, the emphasis is on
applying what's learned to playful and real-world
examples that should make the experience more fun than
expected.",
acknowledgement = ack-nhfb,
subject = "Social sciences; Statistical methods; Computer
programs; R (Computer program language); Statistics; R
(Computer program language); Computer programs.;
Ci{\`e}ncies socials; M{\`e}todes estad{\'i}stics;
Programes d'ordinador; Estadistica; R (Llenguatge de
programaci{\'o})",
tableofcontents = "Why is my evil lecturer forcing me to learn
statistics? \\
Everything you ever wanted to know about statistics
(well, sort of) \\
The R environment \\
Exploring data with graphs \\
Exploring assumptions \\
Correlation \\
Regression \\
Logistic regression \\
Comparing two means \\
Comparing several means: ANOVA (GLM 1) \\
Analysis of covariance, ANCOVA (GLM 2) \\
Factorial ANOVA (GLM 3) \\
Repeated-measures designs (GLM 4) \\
Mixed designs (GLM 5) \\
Non-parametric tests \\
Multivariate analysis of variance (MANOVA) \\
Exploratory factor analysis \\
Categorical data \\
Multilevel linear models",
}
@Article{Fox:2012:RSP,
author = "John Fox and Marilia S. Carvalho",
title = "The {RcmdrPlugin.survival} Package: Extending the {R
Commander} Interface to Survival Analysis",
journal = j-J-STAT-SOFT,
volume = "49",
number = "7",
pages = "??--??",
month = jun,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Oct 29 18:54:10 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v49/i07",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-12-26; Accepted 2011-12-28",
}
@Article{Fricker:2012:BRB,
author = "Ronald D. Fricker",
title = "Book Review: {{\booktitle{Analysis of Questionnaire
Data with R}}}",
journal = j-J-STAT-SOFT,
volume = "46",
number = "BR-1",
pages = "??--??",
month = jan,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Mar 28 07:47:54 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v46/b01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2012-01-09; Accepted 2012-01-09",
}
@Article{Fritz:2012:TRP,
author = "Heinrich Fritz and Luis A. Garc{\'\i}a-Escudero and
Agust{\'\i}n Mayo-Iscar",
title = "{{\tt tclust}}: An {R} Package for a Trimming Approach
to Cluster Analysis",
journal = j-J-STAT-SOFT,
volume = "47",
number = "12",
pages = "??--??",
month = may,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Oct 29 18:54:07 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v47/i12",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-02-22; Accepted 2012-03-07",
}
@Article{Galimberti:2012:CTO,
author = "Giuliano Galimberti and Gabriele Soffritti and Matteo
{Di Maso}",
title = "Classification Trees for Ordinal Responses in {R}: The
{{\tt rpartScore}} Package",
journal = j-J-STAT-SOFT,
volume = "47",
number = "10",
pages = "??--??",
month = may,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Oct 29 18:54:07 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v47/i10",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-11-23; Accepted 2012-04-13",
}
@Article{Gerber:2012:DAM,
author = "Samuel Gerber and Kristin Potter",
title = "Data Analysis with the {Morse--Smale} Complex: The
{{\tt msr}} Package for {R}",
journal = j-J-STAT-SOFT,
volume = "50",
number = "2",
pages = "??--??",
month = jul,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Oct 29 18:54:11 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v50/i02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-03-22; Accepted 2012-04-13",
}
@Article{Goncalves:2012:RPB,
author = "M. Helena Gon{\c{c}}alves and M. Salom{\'e} Cabral and
Adelchi Azzalini",
title = "The {R} Package {{\tt bild}} for the Analysis of
Binary Longitudinal Data",
journal = j-J-STAT-SOFT,
volume = "46",
number = "9",
pages = "??--??",
month = feb,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Mar 28 07:47:54 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v46/i09",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-06-28; Accepted 2011-11-30",
}
@Article{Gopal:2012:BRP,
author = "Vikneswaran Gopal and Claudio Fuentes and George
Casella",
title = "{{\tt bayesclust}}: An {R} Package for Testing and
Searching for Significant Clusters",
journal = j-J-STAT-SOFT,
volume = "47",
number = "14",
pages = "??--??",
month = may,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Oct 29 18:54:07 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v47/i14",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-03-21; Accepted 2012-04-13",
}
@Article{Gruber:2012:TRP,
author = "Susan Gruber and Mark van der Laan",
title = "{\tt tmle}: An {R} Package for Targeted Maximum
Likelihood Estimation",
journal = j-J-STAT-SOFT,
volume = "51",
number = "13",
pages = "??--??",
month = nov,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Tue Apr 30 10:32:05 MDT 2013",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v51/i13",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-02-07; Accepted 2012-10-02",
}
@Article{Grun:2012:EBR,
author = "Bettina Gr{\"u}n and Ioannis Kosmidis and Achim
Zeileis",
title = "Extended Beta Regression in {R}: Shaken, Stirred,
Mixed, and Partitioned",
journal = j-J-STAT-SOFT,
volume = "48",
number = "11",
pages = "??--??",
month = may,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Oct 29 18:54:09 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v48/i11",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-10-15; Accepted 2011-02-14",
}
@Article{Guolo:2012:RPM,
author = "Annamaria Guolo and Cristiano Varin",
title = "The {R} Package {metaLik} for Likelihood Inference in
Meta-Analysis",
journal = j-J-STAT-SOFT,
volume = "50",
number = "7",
pages = "??--??",
month = aug,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Oct 29 18:54:11 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v50/i07",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-11-12; Accepted 2012-06-11",
}
@Article{Haggstrom:2012:SBRa,
author = "Olle H{\"a}ggstr{\"o}m",
title = "Short Book Review: {{\booktitle{The R Primer}} by
Claus Thorn {Ekstr{\o}m}}",
journal = j-INT-STAT-REV,
volume = "80",
number = "1",
pages = "197--197",
month = apr,
year = "2012",
CODEN = "ISTRDP",
DOI = "http://dx.doi.org/10.1111/j.1751-5823.2012.00179_21.x;
http://dx.doi.org/10.2307/23257192",
ISSN = "0306-7734 (print), 1751-5823 (electronic)",
ISSN-L = "0306-7734",
bibdate = "Wed Jun 18 06:26:16 MDT 2014",
bibsource = "http://www.jstor.org/stable/i23257161;
http://www.math.utah.edu/pub/tex/bib/intstatrev.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstor.org/stable/23257192",
acknowledgement = ack-nhfb,
fjournal = "International Statistical Review = Revue
Internationale de Statistique",
journal-URL = "http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1751-5823;
http://www.jstor.org/journals/03067734.html",
onlinedate = "10 Apr 2012",
}
@Article{Hatzinger:2012:PRP,
author = "Reinhold Hatzinger and Regina Dittrich",
title = "{{\tt prefmod}}: An {R} Package for Modeling
Preferences Based on Paired Comparisons, Rankings, or
Ratings",
journal = j-J-STAT-SOFT,
volume = "48",
number = "10",
pages = "??--??",
month = may,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Oct 29 18:54:09 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v48/i10",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-09-23; Accepted 2012-04-05",
}
@Article{He:2012:CSS,
author = "Wenqing He and Juan Xiong and Grace Y. Yi",
title = "Code Snippet: {SIMEX} {R} Package for Accelerated
Failure Time Models with Covariate Measurement Error",
journal = j-J-STAT-SOFT,
volume = "46",
number = "CS-1",
pages = "??--??",
month = jan,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Mar 28 07:47:54 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v46/c01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2008-11-25; Accepted 2011-09-01",
}
@Article{Hojsgaard:2012:GIN,
author = "S{\o}ren H{\o}jsgaard",
title = "Graphical Independence Networks with the {{\tt gRain}}
Package for {R}",
journal = j-J-STAT-SOFT,
volume = "46",
number = "10",
pages = "??--??",
month = feb,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Mar 28 07:47:54 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v46/i10",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-11-20; Accepted 2012-02-06",
}
@Book{Hojsgaard:2012:GMR,
author = "S{\o}ren H{\o}jsgaard and David Edwards and Steffen L.
Lauritzen",
title = "Graphical models with {R}",
publisher = pub-SV,
address = pub-SV:adr,
pages = "ix + 182",
year = "2012",
ISBN = "1-4614-2298-1 (paperback), 1-4614-2299-X (e-book)",
ISBN-13 = "978-1-4614-2298-3 (paperback), 978-1-4614-2299-0
(e-book)",
LCCN = "QA279 .H64 2012",
bibdate = "Thu Jul 10 12:56:09 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Use R!",
acknowledgement = ack-nhfb,
subject = "Graphical modeling (Statistics); R (Computer program
language)",
tableofcontents = "Graphs and conditional independence \\
Log-linear models \\
Bayesian networks \\
Gaussian graphical models \\
Mixed interaction models \\
Graphical models for complex stochastic systems \\
High dimensional modelling \\
References \\
Index",
}
@Article{Hornikova:2012:BRBd,
author = "Adriana Horn{\'\i}kov{\'a}",
title = "Book Review: {{\booktitle{A Primer of Ecology With R}}
by Martin Henry H. Stevens}",
journal = j-TECHNOMETRICS,
volume = "54",
number = "4",
pages = "439--440",
month = nov,
year = "2012",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/41714927",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:46:03 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i40080564;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics2010.bib",
URL = "http://www.jstor.org/stable/41714927",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Article{Huang:2012:DRP,
author = "B. Emma Huang and Rohan Shah and Andrew W. George",
title = "{{\tt dlmap}}: An {R} Package for Mixed Model {QTL}
and Association Analysis",
journal = j-J-STAT-SOFT,
volume = "50",
number = "6",
pages = "??--??",
month = aug,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Oct 29 18:54:11 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v50/i06",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-12-08; Accepted 2012-05-08",
}
@Article{Jiang:2012:OSP,
author = "Lei Jiang and Pragneshkumar B. Patel and George
Ostrouchov and Ferdinand Jamitzky",
title = "{OpenMP}-style parallelism in data-centered multicore
computing with {R}",
journal = j-SIGPLAN,
volume = "47",
number = "8",
pages = "335--336",
month = aug,
year = "2012",
CODEN = "SINODQ",
DOI = "http://dx.doi.org/10.1145/2370036.2145882",
ISSN = "0362-1340 (print), 1523-2867 (print), 1558-1160
(electronic)",
ISSN-L = "0362-1340",
bibdate = "Wed Sep 12 12:11:57 MDT 2012",
bibsource = "http://portal.acm.org/;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/sigplan2010.bib",
note = "PPOPP '12 conference proceedings.",
abstract = "R$^1$ is a domain specific language widely used for
data analysis by the statistics community as well as by
researchers in finance, biology, social sciences, and
many other disciplines. As R programs are linked to
input data, the exponential growth of available data
makes high-performance computing with R imperative. To
ease the process of writing parallel programs in R,
code transformation from a sequential program to a
parallel version would bring much convenience to R
users. In this paper, we present our work in
semi-automatic parallelization of R codes with
user-added OpenMP-style pragmas. While such pragmas are
used at the frontend, we take advantage of multiple
parallel backends with different R packages. We provide
flexibility for importing parallelism with plug-in
components, impose built-in MapReduce for data
processing, and also maintain code reusability. We
illustrate the advantage of the on-the-fly mechanisms
which can lead to significant applications in
data-centered parallel computing.",
acknowledgement = ack-nhfb,
fjournal = "ACM SIGPLAN Notices",
journal-URL = "http://portal.acm.org/browse_dl.cfm?idx=J706",
}
@Article{Kalisch:2012:CIU,
author = "Markus Kalisch and Martin M{\"a}chler and Diego
Colombo and Marloes H. Maathuis and Peter
B{\"u}hlmann",
title = "Causal Inference Using Graphical Models with the {R}
Package {{\tt pcalg}}",
journal = j-J-STAT-SOFT,
volume = "47",
number = "11",
pages = "??--??",
month = may,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Oct 29 18:54:07 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v47/i11",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-10-18; Accepted 2012-02-23",
}
@Article{Keeble:2012:RP,
author = "Claire Keeble",
title = "The {R} primer",
journal = j-J-APPL-STAT,
volume = "39",
number = "10",
pages = "2303--??",
month = oct,
year = "2012",
CODEN = "????",
DOI = "http://dx.doi.org/10.1080/02664763.2012.682453",
ISSN = "0266-4763 (print), 1360-0532 (electronic)",
ISSN-L = "0266-4763",
bibdate = "Sun Nov 4 11:01:41 MST 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/japplstat.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.tandf.co.uk/journals/routledge/02664763.html",
acknowledgement = ack-nhfb,
fjournal = "Journal of Applied Statistics",
journal-URL = "http://www.tandfonline.com/loi/cjas20",
onlinedate = "23 Apr 2012",
}
@Article{Labarre:2012:RBP,
author = "Anthony Labarre",
title = "Review of {{\booktitle{Combinatorial Pattern Matching
Algorithms in Computational Biology using Perl and R}},
by Gabriel Valiente}",
journal = j-SIGACT,
volume = "43",
number = "3",
pages = "48--50",
month = sep,
year = "2012",
CODEN = "SIGNDM",
DOI = "http://dx.doi.org/10.1145/2421096.2421107",
ISSN = "0163-5700 (print), 1943-5827 (electronic)",
ISSN-L = "0163-5700",
bibdate = "Sun May 5 10:25:39 MDT 2013",
bibsource = "http://portal.acm.org/;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/sigact.bib",
acknowledgement = ack-nhfb,
fjournal = "ACM SIGACT News",
journal-URL = "http://dl.acm.org/citation.cfm?id=J697",
}
@Article{Lamigueiro:2012:SSR,
author = "Oscar Perpi{\~n}{\'a}n Lamigueiro",
title = "{solaR}: Solar Radiation and Photovoltaic Systems with
{R}",
journal = j-J-STAT-SOFT,
volume = "50",
number = "9",
pages = "??--??",
month = aug,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Oct 29 18:54:11 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v50/i09",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-12-21; Accepted 2012-06-18",
}
@Article{Langfelder:2012:FRF,
author = "Peter Langfelder and Steve Horvath",
title = "Fast {R} Functions for Robust Correlations and
Hierarchical Clustering",
journal = j-J-STAT-SOFT,
volume = "46",
number = "11",
pages = "??--??",
month = mar,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Mar 28 07:47:54 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v46/i11",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-04-02; Accepted 2011-12-20",
}
@Article{Laurent:2012:GRP,
author = "Thibault Laurent and Anne Ruiz-Gazen and Christine
Thomas-Agnan",
title = "{GeoXp}: An {R} Package for Exploratory Spatial Data
Analysis",
journal = j-J-STAT-SOFT,
volume = "47",
number = "2",
pages = "??--??",
month = apr,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Oct 29 18:54:07 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v47/i02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-08-26; Accepted 2012-01-25",
}
@Book{Li:2012:BRD,
author = "Yuelin Li and Jonathan Baron",
title = "Behavioral research data analysis with {R}",
publisher = pub-SV,
address = pub-SV:adr,
pages = "xii + 245",
year = "2012",
DOI = "http://dx.doi.org/10.1007/978-1-4614-1238-0",
ISBN = "1-4614-1237-4 (paperback), 1-4614-1238-2 (e-book)",
ISBN-13 = "978-1-4614-1237-3 (paperback), 978-1-4614-1238-0
(e-book)",
LCCN = "QA276.45.R3 L5 2012",
bibdate = "Thu Jul 10 13:29:19 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Use R!",
acknowledgement = ack-nhfb,
subject = "R (Computer program language); Statistics; Data
processing; Computer programs; Datenanalyse; Empirische
Forschung; Itemanalyse; R (Programm);
Regressionsanalyse; Verhaltenswissenschaften.",
tableofcontents = "Introduction \\
Reading and Transforming Data Format \\
Statistics for Comparing Means and Proportions \\
R Graphics and Trellis Plots \\
Analysis of Variance \\
Linear and Logistic Regression \\
Statistical Power and Sample Size Considerations \\
Item Response Theory \\
Imputation of Missing Data \\
Linear Mixed Effects Models in Analyzing Repeated
Measures Data \\
Linear Mixed Effects Models in Cluster Randomized
Studies",
}
@Article{Li:2012:CSR,
author = "Mingyu Li and Hui Quan and Joshua Chen and Yoko Tanaka
and Peter Ouyang and Xiaolong Luo and Gang Li",
title = "Code Snippet: {R} Functions for Sample Size and
Probability Calculations for Assessing Consistency of
Treatment Effects in Multi-Regional Clinical Trials",
journal = j-J-STAT-SOFT,
volume = "47",
number = "CS-1",
pages = "??--??",
month = apr,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Oct 29 18:54:07 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v47/c01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-09-08; Accepted 2012-02-23",
}
@Article{Luo:2012:DRP,
author = "Jingqin Luo and Chengjie Xiong",
title = "{DiagTest3Grp}: An {R} Package for Analyzing
Diagnostic Tests with Three Ordinal Groups",
journal = j-J-STAT-SOFT,
volume = "51",
number = "3",
pages = "??--??",
month = oct,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Oct 29 18:54:13 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v51/i03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-10-21; Accepted 2012-09-22",
}
@Article{Magis:2012:RGR,
author = "David Magis and Gilles Ra{\^\i}che",
title = "Random Generation of Response Patterns under
Computerized Adaptive Testing with the {R} Package
{{\tt catR}}",
journal = j-J-STAT-SOFT,
volume = "48",
number = "8",
pages = "??--??",
month = may,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Oct 29 18:54:09 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v48/i08",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-04-22; Accepted 2012-01-09",
}
@Article{Maindonald:2012:SBRb,
author = "John H. Maindonald",
title = "Short Book Review: {{\booktitle{R for SAS and SPSS
Users}}, Second Edition, by Robert A. Muenchen}",
journal = j-INT-STAT-REV,
volume = "80",
number = "1",
pages = "200--201",
month = apr,
year = "2012",
CODEN = "ISTRDP",
DOI = "http://dx.doi.org/10.1111/j.1751-5823.2012.00179_24.x;
http://dx.doi.org/10.2307/23257195",
ISSN = "0306-7734 (print), 1751-5823 (electronic)",
ISSN-L = "0306-7734",
bibdate = "Wed Jun 18 06:26:16 MDT 2014",
bibsource = "http://www.jstor.org/stable/i23257161;
http://www.math.utah.edu/pub/tex/bib/intstatrev.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstor.org/stable/23257195",
acknowledgement = ack-nhfb,
fjournal = "International Statistical Review = Revue
Internationale de Statistique",
journal-URL = "http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1751-5823;
http://www.jstor.org/journals/03067734.html",
onlinedate = "10 Apr 2012",
}
@Article{Melnykov:2012:MRP,
author = "Volodymyr Melnykov and Wei-Chen Chen and Ranjan
Maitra",
title = "{MixSim}: An {R} Package for Simulating Data to Study
Performance of Clustering Algorithms",
journal = j-J-STAT-SOFT,
volume = "51",
number = "12",
pages = "??--??",
month = nov,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Tue Apr 30 10:32:05 MDT 2013",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v51/i12",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-12-04; Accepted 2012-08-13",
}
@Article{Millo:2012:SSP,
author = "Giovanni Millo and Gianfranco Piras",
title = "{{\tt splm}}: Spatial Panel Data Models in {R}",
journal = j-J-STAT-SOFT,
volume = "47",
number = "1",
pages = "??--??",
month = apr,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Oct 29 18:54:07 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v47/i01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-11-18; Accepted 2012-04-05",
}
@Book{Montgomery:2012:ILR,
author = "Douglas C. Montgomery and Elizabeth A. Peck and G.
Geoffrey Vining",
title = "Introduction to linear regression analysis",
publisher = pub-WILEY,
address = pub-WILEY:adr,
edition = "Fifth",
pages = "xvi + 645",
year = "2012",
ISBN = "0-470-54281-0",
ISBN-13 = "978-0-470-54281-1",
LCCN = "QA278.2 .M65 2012",
bibdate = "Mon Mar 10 07:42:07 MDT 2014",
bibsource = "fsz3950.oclc.org:210/WorldCat;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/sas.bib",
series = "Wiley series in probability and statistics",
URL = "http://proquestcombo.safaribooksonline.com/9780470542811",
abstract = "This book describes both the conventional and less
common uses of linear regression in the practical
context of today's mathematical and scientific
research.",
acknowledgement = ack-nhfb,
keywords = "R; SAS",
subject = "Regression analysis; Regression analysis.",
}
@Article{Morandat:2012:EDR,
author = "Flor{\'e}al Morandat and Brandon Hill and Leo Osvald
and Jan Vitek",
title = "Evaluating the Design of the {R} Language",
journal = j-LECT-NOTES-COMP-SCI,
volume = "7313",
pages = "104--131",
year = "2012",
CODEN = "LNCSD9",
DOI = "http://dx.doi.org/10.1007/978-3-642-31057-7_6",
ISSN = "0302-9743 (print), 1611-3349 (electronic)",
ISSN-L = "0302-9743",
bibdate = "Wed Dec 19 15:19:51 MST 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/lncs2012e.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://link.springer.com/chapter/10.1007/978-3-642-31057-7_6/",
acknowledgement = ack-nhfb,
book-DOI = "http://dx.doi.org/10.1007/978-3-642-31057-7",
book-URL = "http://www.springerlink.com/content/978-3-642-31057-7",
fjournal = "Lecture Notes in Computer Science",
journal-URL = "http://link.springer.com/bookseries/558",
}
@Article{Munda:2012:PPF,
author = "Marco Munda and Federico Rotolo and Catherine
Legrand",
title = "{\tt parfm}: Parametric Frailty Models in {R}",
journal = j-J-STAT-SOFT,
volume = "51",
number = "11",
pages = "??--??",
month = nov,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Tue Apr 30 10:32:05 MDT 2013",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v51/i11",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2012-02-17; Accepted 2012-08-10",
}
@Article{Myers:2012:BRBb,
author = "Donald E. Myers",
title = "Book Review: {{\booktitle{Numerical Ecology with R}}
by Daniel Bocard; Fran{\c{c}}ois Gillet; Pierre
Legendre}",
journal = j-TECHNOMETRICS,
volume = "54",
number = "2",
pages = "200--201",
month = may,
year = "2012",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/41714872",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:46:01 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i40080562;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics2010.bib",
URL = "http://www.jstor.org/stable/41714872",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Article{Myers:2012:BRBc,
author = "Donald E. Myers",
title = "Book Review: {{\booktitle{Forest Analytics With R}} by
Andrew P. Robinson; Jeff D. Hamann}",
journal = j-TECHNOMETRICS,
volume = "54",
number = "3",
pages = "320--322",
month = aug,
year = "2012",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/41714901",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:46:02 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i40080563;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics2010.bib",
URL = "http://www.jstor.org/stable/41714901",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Article{Neubauer:2012:BRBa,
author = "Dean V. Neubauer",
title = "Book Review: {{\booktitle{The R Primer}} by Claus
Thorn Ekstr{\o}m}",
journal = j-TECHNOMETRICS,
volume = "54",
number = "3",
pages = "326--327",
month = aug,
year = "2012",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/41714907",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:46:02 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i40080563;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics2010.bib",
URL = "http://www.jstor.org/stable/41714907",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Article{Nia:2012:HDB,
author = "Vahid Partovi Nia and Anthony C. Davison",
title = "High-Dimensional {Bayesian} Clustering with Variable
Selection: The {R} Package {{\tt bclust}}",
journal = j-J-STAT-SOFT,
volume = "47",
number = "5",
pages = "??--??",
month = apr,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Oct 29 18:54:07 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v47/i05",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-01-15; Accepted 2012-04-05",
}
@Article{Noguchi:2012:NRS,
author = "Kimihiro Noguchi and Yulia R. Gel and Edgar Brunner
and Frank Konietschke",
title = "{nparLD}: An {R} Software Package for the
Nonparametric Analysis of Longitudinal Data in
Factorial Experiments",
journal = j-J-STAT-SOFT,
volume = "50",
number = "12",
pages = "??--??",
month = sep,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Oct 29 18:54:11 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v50/i12",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-02-15; Accepted 2012-08-22",
}
@Article{Nolan:2012:IAS,
author = "Deborah Nolan and Duncan Temple Lang",
title = "Interactive and Animated Scalable Vector Graphics and
{R} Data Displays",
journal = j-J-STAT-SOFT,
volume = "46",
number = "1",
pages = "??--??",
month = jan,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Mar 28 07:47:54 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v46/i01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-01-06; Accepted 2011-09-19",
}
@Article{OBrien:2012:SBRa,
author = "Carl M. O'Brien",
title = "Short Book Review: {{\booktitle{Numerical Ecology with
R}} by Daniel Borcard, {Fran{\c{c}}ois} Gillet, Pierre
Legendre}",
journal = j-INT-STAT-REV,
volume = "80",
number = "1",
pages = "201--201",
month = apr,
year = "2012",
CODEN = "ISTRDP",
DOI = "http://dx.doi.org/10.1111/j.1751-5823.2012.00179_25.x;
http://dx.doi.org/10.2307/23257196",
ISSN = "0306-7734 (print), 1751-5823 (electronic)",
ISSN-L = "0306-7734",
bibdate = "Wed Jun 18 06:26:16 MDT 2014",
bibsource = "http://www.jstor.org/stable/i23257161;
http://www.math.utah.edu/pub/tex/bib/intstatrev.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstor.org/stable/23257196",
acknowledgement = ack-nhfb,
fjournal = "International Statistical Review = Revue
Internationale de Statistique",
journal-URL = "http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1751-5823;
http://www.jstor.org/journals/03067734.html",
onlinedate = "10 Apr 2012",
}
@Article{OBrien:2012:SBRg,
author = "Carl M. O'Brien",
title = "Short Book Review: {{\booktitle{Analysis of
Questionnaire Data with R}} by Bruno Falissard}",
journal = j-INT-STAT-REV,
volume = "80",
number = "3",
pages = "474--475",
month = dec,
year = "2012",
CODEN = "ISTRDP",
DOI = "http://dx.doi.org/10.1111/j.1751-5823.2012.00196_5.x",
ISSN = "0306-7734 (print), 1751-5823 (electronic)",
ISSN-L = "0306-7734",
bibdate = "Tue Jun 17 18:23:18 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/intstatrev.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
fjournal = "International Statistical Review = Revue
Internationale de Statistique",
journal-URL = "http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1751-5823;
http://www.jstor.org/journals/03067734.html",
onlinedate = "21 Nov 2012",
}
@Article{Pebesma:2012:SST,
author = "Edzer Pebesma",
title = "{\tt spacetime}: Spatio-Temporal Data in {R}",
journal = j-J-STAT-SOFT,
volume = "51",
number = "7",
pages = "??--??",
month = nov,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Tue Apr 30 10:32:05 MDT 2013",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v51/i07",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-10-05; Accepted 2012-09-26",
}
@Article{Perez:2012:CSI,
author = "Adriana P{\'e}rez and Saijuan Zhang and Victor Kipniss
and Laurence S. Freedman and Raymond J. Carroll",
title = "Code Snippet: {{\tt Intake\_epis\_food()}}: An {R}
Function for Fitting a Bivariate Nonlinear Measurement
Error Model to Estimate Usual and Energy Intake for
Episodically Consumed Foods",
journal = j-J-STAT-SOFT,
volume = "46",
number = "CS-3",
pages = "??--??",
month = mar,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Mar 28 07:47:54 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v46/c03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-07-02; Accepted 2011-12-15",
}
@Article{Pfahler:2012:BRB,
author = "Lori Pfahler",
title = "Book Review: {{\booktitle{A Handbook of Statistical
Analyses Using R}} (2nd ed.) by Brian S. Everitt;
Torsten Hothorn}",
journal = j-TECHNOMETRICS,
volume = "54",
number = "1",
pages = "100--100",
month = feb,
year = "2012",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/41714839",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:46:00 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i40080561;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics2010.bib",
URL = "http://www.jstor.org/stable/41714839",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Book{Putler:2012:CBA,
author = "Daniel S. Putler and Robert E. Krider",
title = "Customer and business analytics: applied data mining
for business decision making using {R}",
publisher = pub-CRC,
address = pub-CRC:adr,
pages = "xxvi + 289",
year = "2012",
ISBN = "1-4665-0396-3",
ISBN-13 = "978-1-4665-0396-0",
LCCN = "HF5415.126 .P88 2012",
bibdate = "Thu Jul 10 13:08:30 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Chapman and Hall/CRC the R series",
acknowledgement = ack-nhfb,
subject = "Database marketing; Software; Data mining; Decision
making; Data processing; R (Computer program language);
Database management",
}
@Article{Quintela-del-Rio:2012:NKD,
author = "Alejandro Quintela-del-R{\'\i}o and Graciela
Est{\'e}vez-P{\'e}rez",
title = "Nonparametric Kernel Distribution Function Estimation
with {{\tt kerdiest}}: An {R} Package for Bandwidth
Choice and Applications",
journal = j-J-STAT-SOFT,
volume = "50",
number = "8",
pages = "??--??",
month = aug,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Oct 29 18:54:11 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v50/i08",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-04-07; Accepted 2012-06-18",
}
@Article{Robert:2012:SBRa,
author = "Christian P. Robert",
title = "Short Book Review: {{\booktitle{Handbook of Fitting
Statistical Distributions with R}} by Zaven A. Karian,
Edward J. Dudewicz}",
journal = j-INT-STAT-REV,
volume = "80",
number = "1",
pages = "177--178",
month = apr,
year = "2012",
CODEN = "ISTRDP",
DOI = "http://dx.doi.org/10.1111/j.1751-5823.2012.00179_2.x;
http://dx.doi.org/10.2307/23257173",
ISSN = "0306-7734 (print), 1751-5823 (electronic)",
ISSN-L = "0306-7734",
bibdate = "Wed Jun 18 06:26:16 MDT 2014",
bibsource = "http://www.jstor.org/stable/i23257161;
http://www.math.utah.edu/pub/tex/bib/intstatrev.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstor.org/stable/23257173",
acknowledgement = ack-nhfb,
fjournal = "International Statistical Review = Revue
Internationale de Statistique",
journal-URL = "http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1751-5823;
http://www.jstor.org/journals/03067734.html",
onlinedate = "10 Apr 2012",
}
@Article{Rodiger:2012:RCG,
author = "Stefan R{\"o}diger and Thomas Friedrichsmeier and
Prasenjit Kapat and Meik Michalke",
title = "{RKWard}: a Comprehensive Graphical User Interface and
Integrated Development Environment for Statistical
Analysis with {R}",
journal = j-J-STAT-SOFT,
volume = "49",
number = "9",
pages = "??--??",
month = jun,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Oct 29 18:54:10 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v49/i09",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-12-28; Accepted 2011-05-06",
}
@Article{Roman-Roman:2012:RPE,
author = "P. Rom{\'a}n-Rom{\'a}n and J. J. Serrano-P{\'e}rez and
F. Torres-Ruiz",
title = "An {R} package for an efficient approximation of
first-passage-time densities for diffusion processes
based on the {FPTL} function",
journal = j-APPL-MATH-COMP,
volume = "218",
number = "17",
pages = "8408--8428",
day = "1",
month = may,
year = "2012",
CODEN = "AMHCBQ",
DOI = "http://dx.doi.org/10.1016/j.amc.2012.01.066",
ISSN = "0096-3003 (print), 1873-5649 (electronic)",
ISSN-L = "0096-3003",
bibdate = "Thu Apr 5 06:00:26 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/applmathcomput2010.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.sciencedirect.com/science/article/pii/S0096300312001154",
acknowledgement = ack-nhfb,
fjournal = "Applied Mathematics and Computation",
journal-URL = "http://www.sciencedirect.com/science/journal/00963003/",
}
@Article{Rondeau:2012:FRP,
author = "Virginie Rondeau and Yassin Marzroui and Juan R.
Gonzalez",
title = "{{\tt frailtypack}}: An {R} Package for the Analysis
of Correlated Survival Data with Frailty Models Using
Penalized Likelihood Estimation or Parametrical
Estimation",
journal = j-J-STAT-SOFT,
volume = "47",
number = "4",
pages = "??--??",
month = apr,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Oct 29 18:54:07 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v47/i04",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-11-12; Accepted 2012-01-25",
}
@Article{Rosseel:2012:LRP,
author = "Yves Rosseel",
title = "{{\tt lavaan}}: An {R} Package for Structural Equation
Modeling",
journal = j-J-STAT-SOFT,
volume = "48",
number = "2",
pages = "??--??",
month = may,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Oct 29 18:54:09 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v48/i02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-09-23; Accepted 2012-02-06",
}
@Article{Roustant:2012:DDT,
author = "Olivier Roustant and David Ginsbourger and Yves
Deville",
title = "{DiceKriging}, {DiceOptim}: Two {R} Packages for the
Analysis of Computer Experiments by Kriging-Based
Metamodeling and Optimization",
journal = j-J-STAT-SOFT,
volume = "51",
number = "1",
pages = "??--??",
month = oct,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Oct 29 18:54:13 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v51/i01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-07-09; Accepted 2012-08-22",
}
@Article{Santos-Fernandez:2012:MRP,
author = "Edgar Santos-Fern{\'a}ndez and Michele Scagliarini",
title = "{MPCI}: An {R} Package for Computing Multivariate
Process Capability Indices",
journal = j-J-STAT-SOFT,
volume = "47",
number = "7",
pages = "??--??",
month = apr,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Oct 29 18:54:07 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v47/i07",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-09-20; Accepted 2012-04-06",
}
@Article{Sauter:2012:BRB,
author = "Roger M. Sauter",
title = "Book Review: {{\booktitle{Data Mining With Rattle and
R}} (1st ed.) by Graham Williams}",
journal = j-TECHNOMETRICS,
volume = "54",
number = "3",
pages = "323--324",
month = aug,
year = "2012",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/41714903",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:46:02 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i40080563;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics2010.bib",
URL = "http://www.jstor.org/stable/41714903",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Article{Scott:2012:SBR,
author = "David Scott",
title = "Short Book Review: {{\booktitle{Mathematical
Statistics with Resampling and R}} by Laura M. Chihara,
Tim C. Hesterberg}",
journal = j-INT-STAT-REV,
volume = "80",
number = "3",
pages = "472--472",
month = dec,
year = "2012",
CODEN = "ISTRDP",
DOI = "http://dx.doi.org/10.1111/j.1751-5823.2012.00196_2.x",
ISSN = "0306-7734 (print), 1751-5823 (electronic)",
ISSN-L = "0306-7734",
bibdate = "Tue Jun 17 18:23:18 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/intstatrev.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
fjournal = "International Statistical Review = Revue
Internationale de Statistique",
journal-URL = "http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1751-5823;
http://www.jstor.org/journals/03067734.html",
onlinedate = "21 Nov 2012",
}
@Article{Shang:2012:GSD,
author = "Han Lin Shang",
title = "Graphics for statistics and data analysis with {R}",
journal = j-J-APPL-STAT,
volume = "39",
number = "8",
pages = "1843--1844",
month = aug,
year = "2012",
CODEN = "????",
DOI = "http://dx.doi.org/10.1080/02664763.2012.679355",
ISSN = "0266-4763 (print), 1360-0532 (electronic)",
ISSN-L = "0266-4763",
bibdate = "Sun Nov 4 11:01:39 MST 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/japplstat.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.tandf.co.uk/journals/routledge/02664763.html",
acknowledgement = ack-nhfb,
fjournal = "Journal of Applied Statistics",
journal-URL = "http://www.tandfonline.com/loi/cjas20",
onlinedate = "23 Apr 2012",
}
@Article{Snellenburg:2012:GJB,
author = "Joris J. Snellenburg and Sergey Laptenok and Ralf
Seger and Katharine M. Mullen and Ivo H. M. van
Stokkum",
title = "{Glotaran}: a {Java}-Based Graphical User Interface
for the {R} Package {TIMP}",
journal = j-J-STAT-SOFT,
volume = "49",
number = "3",
pages = "??--??",
month = jun,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Oct 29 18:54:10 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/java2010.bib;
http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v49/i03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-01-20; Accepted 2011-09-16",
}
@Book{Takezawa:2012:GRG,
author = "Kunio Takezawa",
title = "Guidebook to {R} graphics using Microsoft Windows",
publisher = pub-WILEY,
address = pub-WILEY:adr,
pages = "263",
year = "2012",
ISBN = "1-118-02639-X (paperback)",
ISBN-13 = "978-1-118-02639-7 (paperback)",
LCCN = "T385 .T346 2012",
bibdate = "Thu Jul 10 08:14:55 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
URL = "http://catalogimages.wiley.com/images/db/jimages/9781118026397.jpg",
abstract = "\booktitle{Guidebook to R Graphics Using Microsoft
Windows} supplies an elementary-level introduction to
the R software environment while also presenting a
unique focus on software's ability to generate
high-quality graphics. Rather than speak to readers who
use R on a regular basis to perform statistical
analyses, this book addresses the audience of
researchers and students who are not familiar with the
software but would like to utilize its graphic
functionalities to create visual representations of
data for use in their everyday work. The author
presents the most commonly-used methods for
constructing graphs --- allowing readers to gain
familiarity with the program's main features, rather
than outline R functions and operations in great
detail. The book begins with two introductory chapters
on getting started with R, producing and running R
programs, and techniques for sharing displayed graphics
with other softwares and saving graphs as digital
files. A discussion of base-package plotting functions
is also provided along with how-to guides for
developing various kinds of graphics for statistical
analysis, including steam-and-leaf displays, boxplots,
histograms, scatterplots matrices, and map graphs.
Next, the author outlines the interactive R programs
that can be used to carry out common tasks related to
creating graphics, such as inputting values, moving
data on a natural spline, adjusting three-dimensional
graphs, and understanding simple and local linear
regression. The book concludes with a chapter on the
various external packages for R that can be used to
create more complex graphics, including rimage, gplots,
ggplot2, tripack, rworldmap, and plotrix packages. The
scope of coverage and fluid presentation of the
material allow the book to serve as a platform for
readers to work creatively and productively with their
own data while also unveiling the illustrative
capabilities of R. The author's explanations are
accompanied by numerous screenshots, graphics, and the
appropriate R code. A related FTP site houses
additional data sets and information on external R
packages.",
acknowledgement = ack-nhfb,
author-dates = "1959--",
subject = "Computer graphics; R (Computer program language);
Microsoft Windows (Computer file); MATHEMATICS /
Probability and Statistics / General.",
tableofcontents = "Front Matter \\
Basic Graphics \\
Graphics for Statistical Analysis \\
Interactive R Programs \\
Graphics Obtained Using Packages Based on R \\
Appendix \\
Index",
}
@Article{Theussl:2012:TPD,
author = "Stefan Theu{\ss}l and Ingo Feinerer and Kurt Hornik",
title = "A {\tt tm} Plug-In for Distributed Text Mining in
{R}",
journal = j-J-STAT-SOFT,
volume = "51",
number = "5",
pages = "??--??",
month = nov,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Tue Apr 30 10:32:05 MDT 2013",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v51/i05",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-03-16; Accepted 2012-11-02",
}
@Article{Turner:2012:BTM,
author = "Heather Turner and David Firth",
title = "{Bradley--Terry} Models in {R}: The {BradleyTerry2}
Package",
journal = j-J-STAT-SOFT,
volume = "48",
number = "9",
pages = "??--??",
month = may,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Oct 29 18:54:09 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v48/i09",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-09-16; Accepted 2012-04-23",
}
@Article{Unwin:2012:SBRa,
author = "Antony Unwin",
title = "Short Book Review: {{\booktitle{R Graphics}}, Second
Edition, by Paul Murrell}",
journal = j-INT-STAT-REV,
volume = "80",
number = "2",
pages = "330--331",
month = aug,
year = "2012",
CODEN = "ISTRDP",
DOI = "http://dx.doi.org/10.1111/j.1751-5823.2012.00187_10.x",
ISSN = "0306-7734 (print), 1751-5823 (electronic)",
ISSN-L = "0306-7734",
bibdate = "Tue Jun 17 18:23:18 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/intstatrev.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
fjournal = "International Statistical Review = Revue
Internationale de Statistique",
journal-URL = "http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1751-5823;
http://www.jstor.org/journals/03067734.html",
onlinedate = "1 Aug 2012",
}
@Article{Unwin:2012:SBRb,
author = "Antony Unwin",
title = "Short Book Review: {{\booktitle{An Introduction to
Applied Multivariate Analysis with R}} by Brian Everitt
and Torsten Hothorn}",
journal = j-INT-STAT-REV,
volume = "80",
number = "2",
pages = "331--332",
month = aug,
year = "2012",
CODEN = "ISTRDP",
DOI = "http://dx.doi.org/10.1111/j.1751-5823.2012.00187_11.x",
ISSN = "0306-7734 (print), 1751-5823 (electronic)",
ISSN-L = "0306-7734",
bibdate = "Tue Jun 17 18:23:18 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/intstatrev.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
fjournal = "International Statistical Review = Revue
Internationale de Statistique",
journal-URL = "http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1751-5823;
http://www.jstor.org/journals/03067734.html",
onlinedate = "1 Aug 2012",
}
@Article{Valero-Mora:2012:GUI,
author = "Pedro M. Valero-Mora and Ruben Ledesma",
title = "Graphical User Interfaces for {R}",
journal = j-J-STAT-SOFT,
volume = "49",
number = "1",
pages = "??--??",
month = jun,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Oct 29 18:54:10 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v49/i01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2012-06-03; Accepted 2012-06-03",
}
@Article{vanderArk:2012:NDM,
author = "L. Andries van der Ark",
title = "New Developments in {Mokken} Scale Analysis in {R}",
journal = j-J-STAT-SOFT,
volume = "48",
number = "5",
pages = "??--??",
month = may,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Oct 29 18:54:09 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v48/i05",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-09-13; Accepted 2012-01-18",
}
@Article{Verzani:2012:GCI,
author = "John Verzani",
title = "{gWidgetsWWW}: Creating Interactive {Web} Pages within
{R}",
journal = j-J-STAT-SOFT,
volume = "49",
number = "10",
pages = "??--??",
month = jun,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Oct 29 18:54:10 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v49/i10",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-12-17; Accepted 2011-05-11",
}
@Article{Visne:2012:SRP,
author = "Ilhami Visne and Ahmet Yildiz and Ekran Dilaveroglu
and Klemens Vierlinger and Christa N{\"o}hammer and
Friedrich Leisch and Albert Kriegner",
title = "{speedR}: An {R} Package for Interactive Data Import,
Filtering and Ready-to-Use Code Generation",
journal = j-J-STAT-SOFT,
volume = "51",
number = "2",
pages = "??--??",
month = oct,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Oct 29 18:54:13 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v51/i02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-12-30; Accepted 2012-09-22",
}
@Article{Walker:2012:MTD,
author = "Steven C. Walker and Guillaume Gu{\'e}nard and
P{\'e}ter S{\'o}lymos and Pierre Legendre",
title = "Multiple-Table Data in {R} with the {\tt multitable}
Package",
journal = j-J-STAT-SOFT,
volume = "51",
number = "8",
pages = "??--??",
month = nov,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Tue Apr 30 10:32:05 MDT 2013",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v51/i08",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-10-02; Accepted 2012-08-01",
}
@Article{Wallace:2012:CGB,
author = "Byron C. Wallace and Issa J. Dahabreh and Thomas A.
Trikalinos and Joseph Lau and Paul Trow and Christopher
H. Schmid",
title = "Closing the Gap between Methodologists and End-Users:
{R} as a Computational Back-End",
journal = j-J-STAT-SOFT,
volume = "49",
number = "5",
pages = "??--??",
month = jun,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Oct 29 18:54:10 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v49/i05",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2010-11-01; Accepted 2012-12-20",
}
@Article{Wehrens:2012:MSV,
author = "Ron Wehrens and Pietro Franceschi",
title = "Meta-Statistics for Variable Selection: The {R}
Package {BioMark}",
journal = j-J-STAT-SOFT,
volume = "51",
number = "10",
pages = "??--??",
month = nov,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Tue Apr 30 10:32:05 MDT 2013",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v51/i10",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2012-02-17; Accepted 2012-08-10",
}
@Article{Wei:2012:CSP,
author = "Xin Wei",
title = "Code Snippet: {{\%PROC\_R}}: a {SAS} Macro that
Enables Native {R} Programming in the Base {SAS}
Environment",
journal = j-J-STAT-SOFT,
volume = "46",
number = "CS-2",
pages = "??--??",
month = jan,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Mar 28 07:47:54 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v46/c02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-05-17; Accepted 2011-12-31",
}
@Article{Wickelmaier:2012:PPC,
author = "Florian Wickelmaier and Carolin Strobl and Achim
Zeileis",
title = "{Psychoco}: Psychometric Computing in {R}",
journal = j-J-STAT-SOFT,
volume = "48",
number = "1",
pages = "??--??",
month = may,
year = "2012",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Oct 29 18:54:09 MDT 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v48/i01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2012-05-23; Accepted 2012-05-23",
}
@Article{Young:2012:OED,
author = "Derek S. Young",
title = "Optimal experimental design with {R}",
journal = j-J-APPL-STAT,
volume = "39",
number = "8",
pages = "1848--1849",
month = aug,
year = "2012",
CODEN = "????",
DOI = "http://dx.doi.org/10.1080/02664763.2012.680689",
ISSN = "0266-4763 (print), 1360-0532 (electronic)",
ISSN-L = "0266-4763",
bibdate = "Sun Nov 4 11:01:39 MST 2012",
bibsource = "http://www.math.utah.edu/pub/tex/bib/japplstat.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.tandf.co.uk/journals/routledge/02664763.html",
acknowledgement = ack-nhfb,
fjournal = "Journal of Applied Statistics",
journal-URL = "http://www.tandfonline.com/loi/cjas20",
onlinedate = "23 Apr 2012",
}
@Article{Yu:2012:BRB,
author = "Jihnhee Yu",
title = "Book Review: {{\booktitle{An Introduction to Applied
Multivariate Analysis With R}} by B. Everitt; T.
Hothorn}",
journal = j-TECHNOMETRICS,
volume = "54",
number = "4",
pages = "445--445",
month = nov,
year = "2012",
CODEN = "TCMTA2",
DOI = "http://dx.doi.org/10.2307/41714937",
ISSN = "0040-1706 (print), 1537-2723 (electronic)",
ISSN-L = "0040-1706",
bibdate = "Sat Jun 21 13:46:03 MDT 2014",
bibsource = "http://www.jstor.org/journals/00401706.html;
http://www.jstor.org/stable/i40080564;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/technometrics2010.bib",
URL = "http://www.jstor.org/stable/41714937",
acknowledgement = ack-nhfb,
fjournal = "Technometrics",
journal-URL = "http://www.jstor.org/journals/00401706.html",
}
@Article{Aelst:2013:FRB,
author = "Stefan Van Aelst and Gert Willems",
title = "Fast and Robust Bootstrap for Multivariate Inference:
The {R} Package {FRB}",
journal = j-J-STAT-SOFT,
volume = "53",
number = "3",
pages = "??--??",
month = apr,
year = "2013",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Tue Apr 30 10:32:09 MDT 2013",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v53/i03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2009-09-21; Accepted 2012-11-13",
}
@Book{Agresti:2013:CDA,
author = "Alan Agresti",
title = "Categorical data analysis",
volume = "792",
publisher = pub-WILEY,
address = pub-WILEY:adr,
edition = "Third",
pages = "xvi + 714",
year = "2013",
ISBN = "0-470-46363-5 (hardcover)",
ISBN-13 = "978-0-470-46363-5 (hardcover)",
LCCN = "QA278 .A353 2013",
bibdate = "Thu Jul 10 08:21:40 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Wiley series in probability and statistics",
abstract = "A classic in its own right, this book continues to
provide an introduction to modern generalized linear
models for categorical variables. The text emphasizes
methods that are most commonly used in practical
application, such as classical inferences for two- and
three-way contingency tables, logistic regression,
loglinear models, models for multinomial (nominal and
ordinal) responses, and methods for repeated
measurement and other forms of clustered, correlated
response data. Chapter headings remain essentially with
the exception of a new one on Bayesian inference for
parametric models. Other major changes include an
expansion of clustered data, new research on analysis
of data sets with robust variables, extensive
discussions of ordinal data, more on interpretation,
and additional exercises throughout the book. R and SAS
are now showcased as the software of choice. An author
web site with solutions, commentaries, software
programs, and data sets is available.",
acknowledgement = ack-nhfb,
subject = "Multivariate analysis; MATHEMATICS / Probability and
Statistics / General.",
tableofcontents = "Preface \\
1. Introduction: Distributions and Inference for
Categorical Data 1 \\
1.1 Categorical Response Data, 1 \\
1.2 Distributions for Categorical Data \\
1.3 Statistical Inference for Categorical Data \\
1.4 Statistical Inference for Binomial Parameters \\
1.5 Statistical Inference for Multinomial Parameters
\\
1.6 Bayesian Inference for Binomial and Multinomial
Parameters \\
Notes \\
Exercises \\
2. Describing Contingency Tables \\
2.1 Probability Structure for Contingency Tables \\
2.2 Comparing Two Proportions \\
2.3 Conditional Association in Stratified 2x2 Tables
\\
2.4 Measuring Association in I x J Tables \\
Notes \\
Exercises \\
3. Inference for Two-Way Contingency Tables \\
3.1 Confidence Intervals for Association Parameters \\
3.2 Testing Independence in Two-Way Contingency Tables
\\
3.3 Following-Up Chi-Squared Tests \\
3.4 Two-Way Tables with Ordered Classifications \\
3.5 Small-Sample Inference for Contingency Tables \\
3.6 Bayesian Inference for Two-Way Contingency Tables
\\
3.7 Extensions for Multiway Tables and Nontabulated
Responses \\
Notes \\
Exercises \\
4. Introduction to Generalized Linear Models \\
4.1 The Generalized Linear Model \\
4.2 Generalized Linear Models for Binary Data \\
4.3 Generalized Linear Models for Counts and Rates \\
4.4 Moments and Likelihood for Generalized Linear
Models \\
4.5 Inference and Model Checking for Generalized Linear
Models \\
4.6 Fitting Generalized Linear Models \\
4.7 Quasi-Likelihood and Generalized Linear Models \\
Notes \\
Exercises \\
5. Logistic Regression \\
5.1 Interpreting Parameters in Logistic Regression \\
5.2 Inference for Logistic Regression \\
5.3 Logistic Models with Categorical Predictors \\
5.4 Multiple Logistic Regression \\
5.5 Fitting Logistic Regression Models \\
Notes \\
Exercises \\
6. Building, Checking, and Applying Logistic Regression
Models \\
6.1 Strategies in Model Selection \\
6.2 Logistic Regression Diagnostics \\
6.3 Summarizing the Predictive Power of a Model \\
6.3 Mantel-Haenszel and Related Methods for Multiple
2x2 Tables \\
6.4 Detecting and Dealing with Infinite Estimates \\
6.5 Sample Size and Power Considerations \\
Notes Exercises \\
7. Alternative Modeling of Binary Response Data \\
7.1 Probit and Complementary Log-Log Models \\
7.2 Bayesian Inference for Binary Regression \\
7.3 Conditional Logistic Regression \\
7.4 Smoothing: Kernels, Penalized Likelihood,
Generalized Additive Models \\
7.5 Issues in Analyzing High-Dimensional Categorical
Data \\
Notes \\
Exercises \\
8. Models for Multinomial Responses \\
8.1 Nominal Responses: Baseline-Category Logit Models
\\
8.2 Ordinal Responses: Cumulative Logit Models \\
8.3 Ordinal Responses: Alternative Models \\
8.4 Testing Conditional Independence in I ? J ? K
Tables \\
8.5 Discrete-Choice Models \\
8.6 Bayesian Modeling of Multinomial Responses \\
Notes \\
Exercises \\
9. Loglinear Models for Contingency Tables \\
9.1 Loglinear Models for Two-Way Tables \\
9.2 Loglinear Models for Independence and Interaction
in Three-Way Tables \\
9.3 Inference for Loglinear Models \\
9.4 Loglinear Models for Higher Dimensions \\
9.5 The Loglinear?Logistic Model Connection \\
9.6 Loglinear Model Fitting: Likelihood Equations and
Asymptotic Distributions \\
9.7 Loglinear Model Fitting: Iterative Methods and
their Application \\
Notes \\
Exercises \\
10. Building and Extending Loglinear Models \\
10.1 Conditional Independence Graphs and Collapsibility
\\
10.2 Model Selection and Comparison \\
10.3 Residuals for Detecting Cell-Specific Lack of Fit
\\
10.4 Modeling Ordinal Associations \\
10.5 Generalized Loglinear and Association Models,
Correlation Models, and Correspondence Analysis \\
10.6 Empty Cells and Sparseness in Modeling Contingency
Tables \\
10.7 Bayesian Loglinear Modeling \\
Notes \\
Exercises \\
11. Models for Matched Pairs \\
11.1 Comparing Dependent Proportions \\
11.2 Conditional Logistic Regression for Binary Matched
Pairs \\
11.3 Marginal Models for Square Contingency Tables \\
11.4 Symmetry, Quasi-symmetry, and Quasi-independence
\\
11.5 Measuring Agreement Between Observers \\
11.6 Bradley-Terry Model for Paired Preferences \\
11.7 Marginal Models and Quasi-symmetry Models for
Matched Sets \\
Notes \\
Exercises \\
12. Clustered Categorical Data: Marginal and
Transitional Models \\
12.1 Marginal Modeling: Maximum Likelihood Approach \\
12.2 Marginal Modeling: Generalized Estimating
Equations Approach \\
12.3 Quasi-likelihood and Its GEE Multivariate
Extension: Details \\
12.4 Transitional Models: Markov Chain and Time Series
Models \\
Notes \\
Exercises \\
13. Clustered Categorical Data: Random Effects Models
\\
13.1 Random Effects Modeling of Clustered Categorical
Data \\
13.2 Binary Responses: The Logistic-Normal Model \\
13.3 Examples of Random Effects Models for Binary Data
\\
13.4 Random Effects Models for Multinomial Data \\
13.5 Multilevel Models \\
13.6 GLMM Fitting, Inference, and Prediction \\
13.7 Bayesian Multivariate Categorical Modeling \\
Notes \\
Exercises \\
14. Other Mixture Models for Discrete Data \\
14.1 Latent Class Models \\
14.2 Nonparametric Random Effects Models \\
14.3 Beta-Binomial Models \\
14.4 Negative Binomial Regression \\
14.5 Poisson Regression with Random Effects \\
Notes \\
Exercises \\
15. Non-Model-Based Classification and Clustering \\
15.2 Classification: Linear Discriminant Analysis \\
15.3 Classification: Tree-Structured Prediction \\
15.4 Cluster Analysis for Categorical Data \\
Notes\\
Exercises \\
16. Large- and Small-Sample Theory for Parametric
Models \\
16.1 Delta Method \\
16.2 Asymptotic Distributions of Estimators of Model
Parameters and Cell Probabilities \\
16.3 Asymptotic Distributions of Residuals and
Goodness-of-Fit Statistics \\
16.4 Asymptotic Distributions for Logit/Loglinear
Models \\
16.5 Small-Sample Significance Tests for Contingency
Tables \\
16.6 Small-Sample Confidence Intervals for Categorical
Data \\
16.7 Alternative Estimation Theory for Parametric
Models \\
Notes \\
Exercises \\
17. Historical Tour of Categorical Data Analysis \\
17.1 Pearson-Yule Association Controversy \\
17.2 R. A. Fisher's Contributions \\
17.3 Logistic Regression \\
17.4 Multiway Contingency Tables and Loglinear Models
\\
17.5 Bayesian Methods for Categorical Data \\
17.6 A Look Forward, and Backward \\
Appendix A. Statistical Software for Categorical Data
Analysis \\
Appendix B. Chi-Squared Distribution Values \\
References \\
Author Index \\
Example Index \\
Subject Index",
}
@Article{Alfaro:2013:ARP,
author = "Esteban Alfaro and Matias Gamez and Noelia
Garc{\'\i}a",
title = "{\tt adabag}: An {R} Package for Classification with
Boosting and Bagging",
journal = j-J-STAT-SOFT,
volume = "54",
number = "2",
pages = "??--??",
month = sep,
year = "2013",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Mar 5 10:15:56 MST 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v54/i02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2012-01-26; Accepted 2013-05-29",
}
@Article{Alfons:2013:ESE,
author = "Andreas Alfons and Matthias Templ",
title = "Estimation of Social Exclusion Indicators from Complex
Surveys: The {R} Package {\tt laeken}",
journal = j-J-STAT-SOFT,
volume = "54",
number = "15",
pages = "??--??",
month = sep,
year = "2013",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Mar 5 10:15:56 MST 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v54/i15",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2013-10-18; Accepted 2013-04-02",
}
@Article{Anonymous:2013:URA,
author = "Anonymous",
title = "Using the {R} advanced statistical package",
journal = j-LINUX-J,
volume = "2013",
number = "232",
pages = "1:1--1:??",
month = aug,
year = "2013",
CODEN = "LIJOFX",
ISSN = "1075-3583 (print), 1938-3827 (electronic)",
ISSN-L = "1075-3583",
bibdate = "Fri Sep 13 17:44:26 MDT 2013",
bibsource = "http://portal.acm.org/;
http://www.math.utah.edu/pub/tex/bib/linux-journal.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
abstract = "A look at data analysis with R.",
acknowledgement = ack-nhfb,
articleno = "1",
fjournal = "Linux Journal",
journal-URL = "http://portal.acm.org/citation.cfm?id=J508",
}
@Article{Bakouch:2013:RS,
author = "Hassan S. Bakouch",
title = "{R} for statistics",
journal = j-J-APPL-STAT,
volume = "40",
number = "4",
pages = "924--924",
year = "2013",
DOI = "http://dx.doi.org/10.1080/02664763.2012.761325",
ISSN = "0266-4763 (print), 1360-0532 (electronic)",
ISSN-L = "0266-4763",
bibdate = "Tue Apr 30 09:56:12 MDT 2013",
bibsource = "http://www.math.utah.edu/pub/tex/bib/japplstat.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
fjournal = "Journal of Applied Statistics",
journal-URL = "http://www.tandfonline.com/loi/cjas20",
}
@Article{Barragan:2013:IRP,
author = "Sandra Barrag{\'a}n and Miguel Fern{\'a}ndez and
Cristina Rueda and Shyamal Peddada",
title = "{\tt isocir}: An {R} Package for Constrained Inference
Using Isotonic Regression for Circular Data, with an
Application to Cell Biology",
journal = j-J-STAT-SOFT,
volume = "54",
number = "4",
pages = "??--??",
month = sep,
year = "2013",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Mar 5 10:15:56 MST 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v54/i04",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-04-28; Accepted 2013-01-03",
}
@Article{Beeley:2013:BRD,
author = "Chris Beeley",
title = "Behavioural research data analysis with {R}",
journal = j-J-APPL-STAT,
volume = "40",
number = "4",
pages = "922--922",
year = "2013",
DOI = "http://dx.doi.org/10.1080/02664763.2012.750441",
ISSN = "0266-4763 (print), 1360-0532 (electronic)",
ISSN-L = "0266-4763",
bibdate = "Tue Apr 30 09:56:12 MDT 2013",
bibsource = "http://www.math.utah.edu/pub/tex/bib/japplstat.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
fjournal = "Journal of Applied Statistics",
journal-URL = "http://www.tandfonline.com/loi/cjas20",
}
@Article{Brechmann:2013:MDC,
author = "Eike Christian Brechmann and Ulf Schepsmeier",
title = "Modeling Dependence with {C}- and {D-Vine} Copulas:
The {R} Package {CDVine}",
journal = j-J-STAT-SOFT,
volume = "52",
number = "3",
pages = "??--??",
month = feb,
year = "2013",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Tue Apr 30 10:32:07 MDT 2013",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v52/i03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-06-20; Accepted 2012-09-26",
}
@Article{Carbon:2013:CSB,
author = "Claus-Christian Carbon",
title = "Code Snippet: {BiDimRegression}: Bidimensional
Regression Modeling Using {R}",
journal = j-J-STAT-SOFT,
volume = "52",
number = "CS-1",
pages = "??--??",
month = mar,
year = "2013",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Tue Apr 30 10:32:07 MDT 2013",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v52/c01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-03-14; Accepted 2013-01-15",
}
@Article{Davies:2013:CEG,
author = "Tilman M. Davies and David Bryant",
title = "On Circulant Embedding for {Gaussian} Random Fields in
{R}",
journal = j-J-STAT-SOFT,
volume = "55",
number = "9",
pages = "??--??",
month = nov,
year = "2013",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Mar 5 10:15:58 MST 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v55/i09",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2012-01-16; Accepted 2013-04-05",
}
@Book{Demidenko:2013:MMT,
author = "Eugene Demidenko",
title = "Mixed models: theory and applications with {R}",
volume = "893",
publisher = pub-WILEY,
address = pub-WILEY:adr,
edition = "Second",
pages = "xxvii + 717",
year = "2013",
DOI = "http://dx.doi.org/10.1002/9781118651537",
ISBN = "1-118-09157-4 (hardcover), 1-118-59299-9,
1-118-59301-4, 1-118-59306-5 (e-book), 1-118-65153-7
(e-book)",
ISBN-13 = "978-1-118-09157-9 (hardcover), 978-1-118-59299-1,
978-1-118-59301-1, 978-1-118-59306-6 (e-book),
978-1-118-65153-7 (e-book)",
LCCN = "QA279.D457 2013",
bibdate = "Mon Mar 10 07:25:50 MDT 2014",
bibsource = "fsz3950.oclc.org:210/WorldCat;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
series = "Wiley series in probability and statistics",
abstract = "Mixed modeling is one of the most promising and
exciting areas of statistical analysis, enabling the
analysis of nontraditional, clustered data that may
come in the form of shapes or images. This book
provides in-depth mathematical coverage of mixed
models' statistical properties and numerical
algorithms, as well as applications such as the
analysis of tumor regrowth, shape, and image. The new
edition includes significant updating, over 300
exercises, stimulating chapter projects and model
simulations, inclusion of R subroutines, and a revised
text format. The target audience continues to be
graduate students and researchers. An author-maintained
web site is available with solutions to exercises and a
compendium of relevant data sets.",
acknowledgement = ack-nhfb,
subject = "Analysis of variance; MATHEMATICS; Probability and
Statistics; General.; MATHEMATICS / Applied;
MATHEMATICS / Probability and Statistics / General;
Analysis of variance.",
tableofcontents = "Preface \\
Preface to the Second Edition \\
R software and functions \\
Data Sets \\
Open Problems in Mixed Models \\
1. Introduction: Why Mixed Models? \\
2. MLE for the LME Model \\
3. Statistical Properties of the LME Model \\
4. Growth Curve Model and Generalizations \\
5. Meta-analysis Model \\
6. Nonlinear Marginal Model \\
7. Generalized Linear Mixed Models \\
8. Nonlinear Mixed Effects Model \\
9. Diagnostics and Influence Analysis \\
10. Tumor Regrowth Curves \\
11. Statistical Analysis of Shape \\
12. Statistical Image Analysis \\
13. Appendix: Useful Facts and Formulas",
}
@Book{Dennis:2013:RSC,
author = "Brian Dennis",
title = "The {R} student companion",
publisher = "CRC Press, Taylor and Francis Group",
address = "Boca Raton, FL, USA",
pages = "xvii + 339",
year = "2013",
ISBN = "1-4398-7540-5 (paperback)",
ISBN-13 = "978-1-4398-7540-7 (paperback)",
LCCN = "QA276.45.R3 D46 2013",
bibdate = "Thu Jul 10 12:58:52 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
URL = "http://jacketsearch.tandf.co.uk/common/jackets/covers/websmall/978143987/9781439875407.jpg",
abstract = "R is a computer package for scientific graphs and
calculations. It is written and maintained by
statisticians and scientists, for scientists to use in
their work. It is easy to use, yet is extraordinarily
powerful. R is spreading rapidly throughout the science
and technology world, and it is setting the standards
for graphical data displays in science publications. R
is free. It is an open-source product that is easy to
install on most computers. It is available for Windows,
Mac, and Unix/Linux operating systems. One simply
downloads and installs it from the R website (http://
www.r-project.org/). This book is for high school and
college students, and anyone else, who wants to learn
to use R. With this book, you can put your computer to
work in powerful fashion, in any subject that uses
applied mathematics. In particular, physics, life
sciences, chemistry, earth science, economics,
engineering, and business involve much analysis,
modeling, simulation, statistics, and graphing. These
quantitative applications become remarkably
straightforward and understandable when performed with
R. Difficult concepts in mathematics and statistics
become clear when illustrated with R. The book starts
from the beginning and assumes the reader has no
computer programming background. The mathematical
material in the book requires only a moderate amount of
high school algebra. R makes graphing calculators seem
awkward and obsolete. The calculators are hard to
learn, cumbersome to use for anything but tiny
problems, and the graphs are small and have poor
resolution. Calculating in R by comparison is
intuitive, even fun. Fantastic, publication-quality
graphs of data, equations, or both can be produced with
little effort.",
acknowledgement = ack-nhfb,
author-dates = "1952--",
subject = "R (Computer program language); Probabilities;
Mathematical statistics; Data processing; MATHEMATICS /
General.; MATHEMATICS / Probability and Statistics /
General.",
tableofcontents = "1. Introduction: Getting started with R \\
2. R scripts \\
3. Functions \\
4. Basic graphs \\
5. Data input and output \\
6. Loops \\
7. Logic and control \\
8. Quadratic functions \\
9. Trigonometric functions \\
10. Exponential and logarithmic functions \\
11. Matrix arithmetic \\
12. Systems of linear equations \\
13. Advanced graphs --14. Probability and simulation
\\
15. Fitting models to data \\
16. Conclusion: It doesn't take a rocket scientist \\
Appendix A Installing R \\
Appendix B: Getting help \\
Appendix C: Common R expressions",
}
@Article{Erni:2013:MRP,
author = "Birgit Erni and Bo T. Bonnevie and Hans-Dieter
Oschadleus and Res Altwegg and Les G. Underhill",
title = "{\tt moult}: An {R} Package to Analyze Moult in
Birds",
journal = j-J-STAT-SOFT,
volume = "52",
number = "8",
pages = "??--??",
month = feb,
year = "2013",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Tue Apr 30 10:32:07 MDT 2013",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v52/i08",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-05-20; Accepted 2012-10-25",
}
@Article{Gabriel:2013:SRP,
author = "Edith Gabriel and Barry S. Rowlingson and Peter J.
Diggle",
title = "{\tt stpp}: An {R} Package for Plotting, Simulating
and Analyzing Spatio-Temporal Point Patterns",
journal = j-J-STAT-SOFT,
volume = "53",
number = "2",
pages = "??--??",
month = apr,
year = "2013",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Tue Apr 30 10:32:09 MDT 2013",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v53/i02",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2012-04-29; Accepted 2012-11-30",
}
@Article{Gromping:2013:BRB,
author = "Ulrike Gr{\"o}mping",
title = "Book Review: {{\booktitle{The R Primer}}}",
journal = j-J-STAT-SOFT,
volume = "52",
number = "BR-3",
pages = "??--??",
month = feb,
year = "2013",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Tue Apr 30 10:32:07 MDT 2013",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v52/b03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2013-01-14; Accepted 2013-01-14",
}
@Book{Guay:2013:SSS,
author = "Jean H. Guay",
title = "Statistiques en sciences sociales avec {R}",
publisher = "Presses de l'Universit{\'e} Laval",
address = "Laval, Qu{\'e}bec, Canada",
pages = "xiii + 212",
year = "2013",
ISBN = "2-7637-1773-X",
ISBN-13 = "978-2-7637-1773-9",
LCCN = "QA276.45.R3 G918 2013",
bibdate = "Thu Jul 10 13:10:39 MDT 2014",
bibsource = "fsz3950.oclc.org:210/WorldCat;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
series = "Collection M{\'e}thodes des sciences humaines",
acknowledgement = ack-nhfb,
subject = "R (Computer program language); Social sciences;
Statistical methods; Humanities",
}
@Article{Hand:2013:SBRi,
author = "David J. Hand",
title = "Short Book Review: {{\booktitle{Graphical Models with
R}} by S{\o}ren H{\o}jsgaard, David Edwards, Steffen
Lauritzen}",
journal = j-INT-STAT-REV,
volume = "81",
number = "2",
pages = "316--316",
month = aug,
year = "2013",
CODEN = "ISTRDP",
DOI = "http://dx.doi.org/10.1111/insr.12020_8",
ISSN = "0306-7734 (print), 1751-5823 (electronic)",
ISSN-L = "0306-7734",
bibdate = "Tue Jun 17 18:23:19 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/intstatrev.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
fjournal = "International Statistical Review = Revue
Internationale de Statistique",
journal-URL = "http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1751-5823;
http://www.jstor.org/journals/03067734.html",
onlinedate = "28 Aug 2013",
}
@Article{Hand:2013:SBRk,
author = "David J. Hand",
title = "Short Book Review: {{\booktitle{Comparing Groups:
Randomization and Bootstrap Methods Using R}} by Andrew
S. Zieffler, Jeffrey R. Harring, Jeffrey D. Long}",
journal = j-INT-STAT-REV,
volume = "81",
number = "2",
pages = "326--328",
month = aug,
year = "2013",
CODEN = "ISTRDP",
DOI = "http://dx.doi.org/10.1111/insr.12020_18",
ISSN = "0306-7734 (print), 1751-5823 (electronic)",
ISSN-L = "0306-7734",
bibdate = "Tue Jun 17 18:23:19 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/intstatrev.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
fjournal = "International Statistical Review = Revue
Internationale de Statistique",
journal-URL = "http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1751-5823;
http://www.jstor.org/journals/03067734.html",
onlinedate = "28 Aug 2013",
}
@Article{Hornik:2013:TPG,
author = "Kurt Hornik and Patrick Mair and Johannes Rauch and
Wilhelm Geiger and Christian Buchta and Ingo Feinerer",
title = "The {\tt textcat} Package for $n$-Gram Based Text
Categorization in {R}",
journal = j-J-STAT-SOFT,
volume = "52",
number = "6",
pages = "??--??",
month = feb,
year = "2013",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Tue Apr 30 10:32:07 MDT 2013",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v52/i06",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-07-11; Accepted 2012-10-01",
}
@Book{James:2013:ISL,
author = "Gareth James and Daniela Witten and Trevor Hastie and
Robert Tibshirani",
title = "An introduction to statistical learning: with
applications in {R}",
volume = "103",
publisher = pub-SV,
address = pub-SV:adr,
pages = "xvi + 426",
year = "2013",
ISBN = "1-4614-7137-0, 1-4614-7138-9 (e-book)",
ISBN-13 = "978-1-4614-7137-0, 978-1-4614-7138-7 (e-book)",
ISSN = "1431-875X",
LCCN = "QA276 .I585 2013",
bibdate = "Thu Jul 10 13:31:04 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Springer texts in statistics",
abstract = "\booktitle{An Introduction to Statistical Learning}
provides an accessible overview of the field of
statistical learning, an essential toolset for making
sense of the vast and complex data sets that have
emerged in fields ranging from biology to finance to
marketing to astrophysics in the past twenty years.
This book presents some of the most important modeling
and prediction techniques, along with relevant
applications. Topics include linear regression,
classification, resampling methods, shrinkage
approaches, tree-based methods, support vector
machines, clustering, and more. Color graphics and
real-world examples are used to illustrate the methods
presented. Since the goal of this textbook is to
facilitate the use of these statistical learning
techniques by practitioners in science, industry, and
other fields, each chapter contains a tutorial on
implementing the analyses and methods presented in R,
an extremely popular open source statistical software
platform.Two of the authors co-wrote The Elements of
Statistical Learning (Hastie, Tibshirani and Friedman,
2nd edition 2009), a popular reference book for
statistics and machine learning researchers.
\booktitle{An Introduction to Statistical Learning}
covers many of the same topics, but at a level
accessible to a much broader audience. This book is
targeted at statisticians and non-statisticians alike
who wish to use cutting-edge statistical learning
techniques to analyze their data. The text assumes only
a previous course in linear regression and no knowledge
of matrix algebra. Provides tools for Statistical
Learning that are essential for practitioners in
science, industry and other fields. Analyses and
methods are presented in R. Topics include linear
regression, classification, resampling methods,
shrinkage approaches, tree-based methods, support
vector machines, and clustering. Extensive use of color
graphics assist the reader.",
acknowledgement = ack-nhfb,
subject = "Mathematical statistics; Mathematical models;
Problems, exercises, etc; R (Computer program
language); Statistics",
tableofcontents = "Introduction \\
Statistical learning \\
Linear regression \\
Classification \\
Resampling methods \\
Linear model selection and regularization \\
Moving beyond linearity \\
Tree-based methods \\
Support vector machines \\
Unsupervised learning",
}
@Article{Kauppinen:2013:SBR,
author = "Joonas Kauppinen",
title = "Short Book Review: {{\booktitle{The R Student
Companion}} by Brian Dennis}",
journal = j-INT-STAT-REV,
volume = "81",
number = "2",
pages = "309--309",
month = aug,
year = "2013",
CODEN = "ISTRDP",
DOI = "http://dx.doi.org/10.1111/insr.12020_3",
ISSN = "0306-7734 (print), 1751-5823 (electronic)",
ISSN-L = "0306-7734",
bibdate = "Tue Jun 17 18:23:19 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/intstatrev.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
fjournal = "International Statistical Review = Revue
Internationale de Statistique",
journal-URL = "http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1751-5823;
http://www.jstor.org/journals/03067734.html",
onlinedate = "28 Aug 2013",
}
@Article{Kovalchik:2013:FAB,
author = "Stephanie Kovalchik and Ravi Varadhan",
title = "Fitting Additive Binomial Regression Models with the
{R} Package {\tt blm}",
journal = j-J-STAT-SOFT,
volume = "54",
number = "1",
pages = "??--??",
month = sep,
year = "2013",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Mar 5 10:15:56 MST 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v54/i01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-11-22; Accepted 2013-05-30",
}
@Article{Kuhnt:2013:SOM,
author = "Sonja Kuhnt and Nikolaus Rudak",
title = "Simultaneous Optimization of Multiple Responses with
the {R} Package {JOP}",
journal = j-J-STAT-SOFT,
volume = "54",
number = "9",
pages = "??--??",
month = sep,
year = "2013",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Mar 5 10:15:56 MST 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v54/i09",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-12-07; Accepted 2013-03-01",
}
@Article{Lee:2013:CRP,
author = "Duncan Lee",
title = "{CARBayes}: An {R} Package for {Bayesian} Spatial
Modeling with Conditional Autoregressive Priors",
journal = j-J-STAT-SOFT,
volume = "55",
number = "13",
pages = "??--??",
month = nov,
year = "2013",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Mar 5 10:15:58 MST 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v55/i13",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2012-09-24; Accepted 2013-05-07",
}
@Article{Leifeld:2013:TCS,
author = "Philip Leifeld",
title = "{\tt texreg}: Conversion of Statistical Model Output
in {R} to {\LaTeX} and {HTML} Tables",
journal = j-J-STAT-SOFT,
volume = "55",
number = "8",
pages = "??--??",
month = nov,
year = "2013",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Mar 5 10:15:58 MST 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/texbook3.bib",
URL = "http://www.jstatsoft.org/v55/i08",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2012-10-16; Accepted 2013-04-04",
}
@Article{Lopez-de-Ullibarri:2013:SRP,
author = "Ignacio L{\'o}pez-de-Ullibarri and M. Amalia
J{\'a}come",
title = "{{\tt survPresmooth}}: An {R} Package for Presmoothed
Estimation in Survival Analysis",
journal = j-J-STAT-SOFT,
volume = "54",
number = "11",
pages = "??--??",
month = sep,
year = "2013",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Mar 5 10:15:56 MST 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v54/i11",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-03-21; Accepted 2013-03-13",
}
@Article{Ludlam:2013:BEN,
author = "John Ludlam",
title = "{{\booktitle{R by Example: Numerical Solutions to
Differential Equations}} (Soetaert, K., et al; 2012)}
[Book Review]",
journal = j-COMPUT-SCI-ENG,
volume = "15",
number = "2",
pages = "6--7",
month = mar # "\slash " # apr,
year = "2013",
CODEN = "CSENFA",
DOI = "http://doi.ieeecomputersociety.org/10.1109/MCSE.2013.34",
ISSN = "1521-9615 (print), 1558-366X (electronic)",
ISSN-L = "1521-9615",
bibdate = "Fri Jun 21 08:35:36 2013",
bibsource = "http://www.math.utah.edu/pub/tex/bib/computscieng.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
fjournal = "Computing in Science and Engineering",
journal-URL = "http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?punumber=5992",
}
@Article{Matloff:2013:BRB,
author = "Norman S. Matloff",
title = "Book Review: {{\booktitle{The R Student Companion}}}",
journal = j-J-STAT-SOFT,
volume = "52",
number = "BR-4",
pages = "??--??",
month = feb,
year = "2013",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Tue Apr 30 10:32:07 MDT 2013",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v52/b04",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2013-02-03; Accepted 2013-02-03",
}
@Article{McLachlan:2013:ERP,
author = "Geoff McLachlan and Sharon X. Lee",
title = "{EMMIXuskew}: An {R} Package for Fitting Mixtures of
Multivariate Skew $t$ Distributions via the {EM}
Algorithm",
journal = j-J-STAT-SOFT,
volume = "55",
number = "12",
pages = "??--??",
month = nov,
year = "2013",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Mar 5 10:15:58 MST 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v55/i12",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2012-02-03; Accepted 2013-11-15",
}
@Article{Meulders:2013:RPP,
author = "Michel Meulders",
title = "An {R} Package for Probabilistic Latent Feature
Analysis of Two-Way Two-Mode Frequencies",
journal = j-J-STAT-SOFT,
volume = "54",
number = "14",
pages = "??--??",
month = sep,
year = "2013",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Mar 5 10:15:56 MST 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v54/i14",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-12-19; Accepted 2013-03-29",
}
@Article{Miecznikowski:2013:DRP,
author = "Jeffrey Miecznikowski and Albert Vexler and Lori
Shepherd",
title = "{{\tt dbEmpLikeGOF}}: An {R} Package for Nonparametric
Likelihood Ratio Tests for Goodness-of-Fit and
Two-Sample Comparisons Based on Sample Entropy",
journal = j-J-STAT-SOFT,
volume = "54",
number = "3",
pages = "??--??",
month = sep,
year = "2013",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Mar 5 10:15:56 MST 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v54/i03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-03-02; Accepted 2013-07-26",
}
@Article{Mullner:2013:FFH,
author = "Daniel M{\"u}llner",
title = "{\tt fastcluster}: Fast Hierarchical, Agglomerative
Clustering Routines for {R} and {Python}",
journal = j-J-STAT-SOFT,
volume = "53",
number = "9",
pages = "??--??",
month = may,
year = "2013",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Mar 5 10:15:54 MST 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/python.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v53/i09",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-10-01; Accepted 2012-12-05",
}
@Article{Mwitondi:2013:DMR,
author = "Kassim S. Mwitondi",
title = "Data mining with {Rattle} and {R}",
journal = j-J-APPL-STAT,
volume = "40",
number = "2",
pages = "464--464",
year = "2013",
DOI = "http://dx.doi.org/10.1080/02664763.2012.749050",
ISSN = "0266-4763 (print), 1360-0532 (electronic)",
ISSN-L = "0266-4763",
bibdate = "Tue Apr 30 09:56:09 MDT 2013",
bibsource = "http://www.math.utah.edu/pub/tex/bib/japplstat.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
fjournal = "Journal of Applied Statistics",
journal-URL = "http://www.tandfonline.com/loi/cjas20",
}
@Article{Mwitondi:2013:SCC,
author = "Kassim S. Mwitondi",
title = "Statistical computing in {C++} and {R}",
journal = j-J-APPL-STAT,
volume = "40",
number = "4",
pages = "916--916",
year = "2013",
DOI = "http://dx.doi.org/10.1080/02664763.2012.749033",
ISSN = "0266-4763 (print), 1360-0532 (electronic)",
ISSN-L = "0266-4763",
bibdate = "Tue Apr 30 09:56:12 MDT 2013",
bibsource = "http://www.math.utah.edu/pub/tex/bib/japplstat.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
fjournal = "Journal of Applied Statistics",
journal-URL = "http://www.tandfonline.com/loi/cjas20",
}
@Article{Nummi:2013:SBRa,
author = "Tapio Nummi",
title = "Short Book Review: {{\booktitle{Clinical Trial Data
Analysis Using R}} by Ding-Geng (Din) Chen, Karl E.
Peace}",
journal = j-INT-STAT-REV,
volume = "81",
number = "1",
pages = "151--151",
month = apr,
year = "2013",
CODEN = "ISTRDP",
DOI = "http://dx.doi.org/10.1111/insr.12011_1",
ISSN = "0306-7734 (print), 1751-5823 (electronic)",
ISSN-L = "0306-7734",
bibdate = "Wed Jun 18 11:35:31 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/intstatrev.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
fjournal = "International Statistical Review",
journal-URL = "http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1751-5823;
http://www.jstor.org/journals/03067734.html",
onlinedate = "1 Apr 2013",
}
@Article{OBrien:2013:SBRa,
author = "Carl M. O'Brien",
title = "Short Book Review: {{\booktitle{An Introduction to
Bootstrap Methods with Applications to R}} by Michael
R. Chernick, Robert A. LaBudde}",
journal = j-INT-STAT-REV,
volume = "81",
number = "1",
pages = "157--158",
month = apr,
year = "2013",
CODEN = "ISTRDP",
DOI = "http://dx.doi.org/10.1111/insr.12011_8",
ISSN = "0306-7734 (print), 1751-5823 (electronic)",
ISSN-L = "0306-7734",
bibdate = "Wed Jun 18 11:35:31 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/intstatrev.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
fjournal = "International Statistical Review",
journal-URL = "http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1751-5823;
http://www.jstor.org/journals/03067734.html",
onlinedate = "1 Apr 2013",
}
@Article{Ooms:2013:RPE,
author = "Jeroen Ooms",
title = "The {RAppArmor} Package: Enforcing Security Policies
in {R} Using Dynamic Sandboxing on {Linux}",
journal = j-J-STAT-SOFT,
volume = "55",
number = "7",
pages = "??--??",
month = nov,
year = "2013",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Mar 5 10:15:58 MST 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/linux.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/unix.bib",
URL = "http://www.jstatsoft.org/v55/i07",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2012-08-03; Accepted 2013-04-10",
}
@Book{Pfaff:2013:FRM,
author = "Bernhard Pfaff",
title = "Financial risk modelling and portfolio optimization
with {R}",
publisher = pub-WILEY,
address = pub-WILEY:adr,
pages = "xvi + 356",
year = "2013",
DOI = "http://dx.doi.org/10.1002/9781118477144",
ISBN = "0-470-97870-8 (hardcover), 1-118-47713-8 (e-book),
1-118-47712-X (ebook)",
ISBN-13 = "978-0-470-97870-2 (hardcover), 978-1-118-47713-7
(e-book), 978-1-118-47712-0 (ebook)",
LCCN = "HG106 .P484 2013eb",
bibdate = "Fri Jul 25 07:01:32 MDT 2014",
bibsource = "fsz3950.oclc.org:210/WorldCat",
series = "Statistics in practice",
URL = "http://librarytitles.ebrary.com/Doc?id=10777209;
http://rbdigital.oneclickdigital.com",
abstract = "The latest techniques advocated for measuring
financial market risk and portfolio optimization, and
provides a plethora of R code examples that enable the
reader to replicate the results featured throughout the
book. Financial Risk Modelling and Portfolio
Optimization with R: -Demonstrates techniques in
modelling financial risks and applying portfolio
optimization techniques as well as recent advances in
the field.-Introduces stylized facts, loss function and
risk measures, conditional and unconditional modelling
of risk; extreme value theory, generalized hyperbolic
distribution, volatility modelling and concepts for
capturing dependencies.-Explores portfolio risk
concepts and optimization with risk
constraints.-Enables the reader to replicate the
results in the book using R code.-Is accompanied by a
supporting website featuring examples and case studies
in R. Graduate and postgraduate students in finance,
economics, risk management as well as practitioners in
finance and portfolio optimization will find this book
beneficial. It also serves well as an accompanying text
in computer-lab classes and is therefore suitable for
self-study.",
acknowledgement = ack-nhfb,
subject = "Financial risk; Mathematical models; Portfolio
management; R (Computer program language); MATHEMATICS;
Probability and Statistics; General.",
tableofcontents = "Part I. Motivation \\
part II. Risk modelling \\
part III. Portfolio optimization approaches",
tableofcontents = "Preface / xi \\
List of abbreviations / xiii \\
Part I: Motivation / 1 \\
1 Introduction / 3 \\
2 A brief course in R / 6 \\
2.1 Origin and development / 6 \\
2.2 Getting help / 7 \\
2.3 Working with R / 10 \\
2.4 Classes, methods and functions / 12 \\
2.5 The accompanying package FRAPO / 20 \\
References / 25 \\
3 Financial market data / 26 \\
3.1 Stylized facts on financial market returns / 26 \\
3.1.1 Stylized facts for univariate series / 26 \\
3.1.2 Stylized facts for multivariate series / 29 \\
3.2 Implications for risk models / 32 \\
References / 33 \\
4 Measuring risks / 34 \\
4.1 Introduction / 34 \\
4.2 Synopsis of risk measures / 34 \\
4.3 Portfolio risk concepts / 39 \\
References / 41 \\
5 Modern portfolio theory / 43 \\
5.1 Introduction / 43 \\
5.2 Markowitz portfolios / 43 \\
5.3 Empirical mean-variance portfolios / 47 \\
References / 49 \\
Part II RISK MODELLING / 51 \\
6 Suitable distributions for returns / 53 \\
6.1 Preliminaries / 53 \\
6.2 The generalized hyperbolic distribution / 53 \\
6.3 The generalized lambda distribution / 56 \\
6.4 Synopsis of R packages for the GHD / 62 \\
6.4.1 The package fBasics / 62 \\
6.4.2 The package GeneralizedHyperbolic / 63 \\
6.4.3 The package ghyp / 64 \\
6.4.4 The package QRM / 65 \\
6.4.5 The package SkewHyperbolic / 66 \\
6.4.6 The package VarianceGamma / 67 \\
6.5 Synopsis of R packages for GLD / 67 \\
6.5.1 The package Davies / 67 \\
6.5.2 The package fBasics / 67 \\
6.5.3 The package gld / 68 \\
6.5.4 The package lmomco / 69 \\
6.6 Applications of the GHD to risk modelling / 69 \\
6.6.1 Fitting stock returns to the GHD / 69 \\
6.6.2 Risk assessment with the GHD / 73 \\
6.6.3 Stylized facts revisited / 75 \\
6.7 Applications of the GLD to risk modelling and data
analysis / 78 \\
6.7.1 VaR for a single stock / 78 \\
6.7.2 Shape triangle for FTSE 100 constituents / 79 \\
References / 82 \\
7 Extreme value theory / 84 \\
7.1 Preliminaries / 84 \\
7.2 Extreme value methods and models / 85 \\
7.2.1 The block maxima approach / 85 \\
7.2.2 rth largest order models / 86 \\
7.2.3 The peaks-over-threshold approach / 87 \\
7.3 Synopsis of R packages / 89 \\
7.3.1 The package evd / 89 \\
7.3.2 The package evdbayes / 90 \\
7.3.3 The package evir / 91 \\
7.3.4 The package fExtremes / 93 \\
7.3.5 The packages ismev and extRemes / 95 \\
7.3.6 The package POT / 96 \\
7.3.7 The package QRM / 97 \\
7.3.8 The package Renext / 97 \\
7.4 Empirical applications of EVT / 98 \\
7.4.1 Section outline / 98 \\
7.4.2 Block maxima model for Siemens / 99 \\
7.4.3 r block maxima model for BMW / 101 \\
7.4.4 POT method for Boeing / 105 \\
References / 110 \\
8 Modelling volatility / 112 \\
8.1 Preliminaries / 112 \\
8.2 The class of ARCH models / 112 \\
8.3 Synopsis of R packages / 116 \\
8.3.1 The package bayesGARCH / 116 \\
8.3.2 The package ccgarch / 117 \\
8.3.3 The package fGarch / 118 \\
8.3.4 The package gogarch / 118 \\
8.3.5 The packages rugarch and rmgarch / 120 \\
8.3.6 The package tseries / 122 \\
8.4 Empirical application of volatility models / 123
\\
References / 125 \\
9 Modelling dependence / 127 \\
9.1 Overview / 127 \\
9.2 Correlation, dependence and distributions / 127 \\
9.3 Copulae / 130 \\
9.3.1 Motivation / 130 \\
9.3.2 Correlations and dependence revisited / 131 \\
9.3.3 Classification of copulae / 133 \\
9.4 Synopsis of R packages / 136 \\
9.4.1 The package BLCOP / 136 \\
9.4.2 The packages copula and nacopula / 138 \\
9.4.3 The package fCopulae / 140 \\
9.4.4 The package gumbel / 141 \\
9.4.5 The package QRM / 142 \\
9.5 Empirical applications of copulae / 142 \\
9.5.1 GARCH-copula model / 142 \\
9.5.2 Mixed copula approaches / 149 \\
References / 151 \\
Part III PORTFOLIO OPTIMIZATION APPROACHES / 153 \\
10 Robust portfolio optimization / 155 \\
10.1 Overview / 155 \\
10.2 Robust statistics / 156 \\
10.2.1 Motivation / 156 \\
10.2.2 Selected robust estimators / 157 \\
10.3 Robust optimization / 160 \\
10.3.1 Motivation / 160 \\
10.3.2 Uncertainty sets and problem formulation / 160
\\
10.4 Synopsis of R packages / 166 \\
10.4.1 The package covRobust / 166 \\
10.4.2 The package fPortfolio / 166 \\
10.4.3 The package MASS / 167 \\
10.4.4 The package robustbase / 168 \\
10.4.5 The package robust / 168 \\
10.4.6 The package rrcov / 169 \\
10.4.7 The package Rsocp / 170 \\
10.5 Empirical applications / 171 \\
10.5.1 Portfolio simulation: Robust versus classical
statistics / 171 \\
10.5.2 Portfolio back-test: Robust versus classical
statistics / 177 \\
10.5.3 Portfolio back-test: Robust optimization / 182
\\
References / 187 \\
11 Diversification reconsidered / 189 \\
11.1 Introduction / 189 \\
11.2 Most diversified portfolio / 190 \\
11.3 Risk contribution constrained portfolios / 192 \\
11.4 Optimal tail-dependent portfolios / 195 \\
11.5 Synopsis of R packages / 197 \\
11.5.1 The packages DEoptim and RcppDE / 197 \\
11.5.2 The package FRAPO / 199 \\
11.5.3 The package PortfolioAnalytics / 201 \\
11.6 Empirical applications / 201 \\
11.6.1 Comparison of approaches / 201 \\
11.6.2 Optimal tail-dependent portfolio against
benchmark / 206 \\
11.6.3 Limiting contributions to expected shortfall /
211 \\
References / 215 \\
12 Risk-optimal portfolios / 217 \\
12.1 Overview / 217 \\
12.2 Mean-VaR portfolios / 218 \\
12.3 Optimal CVaR portfolios / 223 \\
12.4 Optimal draw-down portfolios / 227 \\
12.5 Synopsis of R packages / 229 \\
12.5.1 The package fPortfolio / 229 \\
12.5.2 The package FRAPO / 230 \\
12.5.3 Packages for linear programming / 232 \\
12.5.4 The package PerformanceAnalytics / 236 \\
12.6 Empirical applications / 238 \\
12.6.1 Minimum-CVaR versus minimum-variance portfolios
/ 238 \\
12.6.2 Draw-down constrained portfolios / 242 \\
12.6.3 Back-test comparison for stock portfolio / 247
\\
References / 253 \\
13 Tactical asset allocation / 255 \\
13.1 Overview / 255 \\
13.2 Survey of selected time series models / 256 \\
13.2.1 Univariate time series models / 256 \\
13.2.2 Multivariate time series models / 262 \\
13.3 Black-Litterman approach / 270 \\
13.4 Copula opinion and entropy pooling / 273 \\
13.4.1 Introduction / 273 \\
13.4.2 The COP model / 273 \\
13.4.3 The EP model / 274 \\
13.5 Synopsis of R packages / 276 \\
13.5.1 The package BLCOP / 276 \\
13.5.2 The package dse / 278 \\
13.5.3 The package fArma / 281 \\
13.5.4 The package forecast / 281 \\
13.5.5 The package MSBVAR / 283 \\
13.5.6 The package PairTrading / 284 \\
13.5.7 The packages urca and vars / 285 \\
13.6 Empirical applications / 288 \\
13.6.1 Black-Litterman portfolio optimization / 288 \\
13.6.2 Copula opinion pooling / 295 \\
13.6.3 Protection strategies / 299 \\
References / 310 \\
Appendix A Package overview / 314 \\
A.1 Packages in alphabetical order / 314 \\
A.2 Packages ordered by topic / 317 \\
References / 320 \\
Appendix B Time series data / 324 \\
B.1 Date-time classes / 324 \\
B.2 The ts class in the base package stats / 327 \\
B.3 Irregular-spaced time series / 328 \\
B.4 The package timeSeries / 330 \\
B.5 The package zoo / 332 \\
B.6 The packages tframe and xts / 334 \\
References / 337 \\
Appendix C Back-testing and reporting of portfolio
strategies / 338 \\
C.1 R packages for back-testing / 338 \\
C.2 R facilities for reporting / 339 \\
C.3 Interfacing databases / 339 \\
References / 340 \\
Appendix D Technicalities / 342 \\
Index / 343",
}
@Article{Pilhofer:2013:NAV,
author = "Alexander Pilh{\"o}fer and Antony Unwin",
title = "New Approaches in Visualization of Categorical Data:
{R} Package {\tt extracat}",
journal = j-J-STAT-SOFT,
volume = "53",
number = "7",
pages = "??--??",
month = may,
year = "2013",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Mar 5 10:15:54 MST 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v53/i07",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-02-22; Accepted 2013-05-19",
}
@Article{Polasek:2013:SBRc,
author = "Wolfgang Polasek",
title = "Short Book Review: {{\booktitle{Time Series Analysis
and Its Applications: With R Examples}}, Third Edition
by Robert H. Shumway, David S. Stoffer}",
journal = j-INT-STAT-REV,
volume = "81",
number = "2",
pages = "323--325",
month = aug,
year = "2013",
CODEN = "ISTRDP",
DOI = "http://dx.doi.org/10.1111/insr.12020_15",
ISSN = "0306-7734 (print), 1751-5823 (electronic)",
ISSN-L = "0306-7734",
bibdate = "Wed Jun 18 11:42:41 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/intstatrev.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
fjournal = "International Statistical Review = Revue
Internationale de Statistique",
journal-URL = "http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1751-5823;
http://www.jstor.org/journals/03067734.html",
onlinedate = "28 Aug 2013",
}
@Article{Scott:2013:SBRa,
author = "David Scott",
title = "Short Book Review: {{\booktitle{Statistical Computing
in C++ and R}} by Randall L. Eubank, Ana Kupresanin}",
journal = j-INT-STAT-REV,
volume = "81",
number = "1",
pages = "159--160",
month = apr,
year = "2013",
CODEN = "ISTRDP",
DOI = "http://dx.doi.org/10.1111/insr.12011_11",
ISSN = "0306-7734 (print), 1751-5823 (electronic)",
ISSN-L = "0306-7734",
bibdate = "Wed Jun 18 11:35:31 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/intstatrev.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
fjournal = "International Statistical Review",
journal-URL = "http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1751-5823;
http://www.jstor.org/journals/03067734.html",
onlinedate = "1 Apr 2013",
}
@Article{Scott:2013:SBRc,
author = "David Scott",
title = "Short Book Review: {{\booktitle{Customer and Business
Analytics: Applied Data Mining for Business Decision
Making Using R}} by Daniel S. Putler, Robert E.
Krider}",
journal = j-INT-STAT-REV,
volume = "81",
number = "2",
pages = "328--328",
month = aug,
year = "2013",
CODEN = "ISTRDP",
DOI = "http://dx.doi.org/10.1111/insr.12020_19",
ISSN = "0306-7734 (print), 1751-5823 (electronic)",
ISSN-L = "0306-7734",
bibdate = "Tue Jun 17 18:23:19 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/intstatrev.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
fjournal = "International Statistical Review = Revue
Internationale de Statistique",
journal-URL = "http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1751-5823;
http://www.jstor.org/journals/03067734.html",
onlinedate = "28 Aug 2013",
}
@Article{Scrucca:2013:GPG,
author = "Luca Scrucca",
title = "{GA}: a Package for Genetic Algorithms in {R}",
journal = j-J-STAT-SOFT,
volume = "53",
number = "4",
pages = "??--??",
month = apr,
year = "2013",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Tue Apr 30 10:32:09 MDT 2013",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v53/i04",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-11-29; Accepted 2012-11-16",
}
@Article{Shotwell:2013:PRP,
author = "Matthew S. Shotwell",
title = "{\tt profdpm}: An {R} Package for {MAP} Estimation in
a Class of Conjugate Product Partition Models",
journal = j-J-STAT-SOFT,
volume = "53",
number = "8",
pages = "??--??",
month = may,
year = "2013",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Mar 5 10:15:54 MST 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v53/i08",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-07-20; Accepted 2012-12-27",
}
@Article{Slaets:2013:WFD,
author = "Leen Slaets and Gerda Claeskens and Bernard W.
Silverman",
title = "Warping Functional Data in {R} and {C} via a
{Bayesian} Multiresolution Approach",
journal = j-J-STAT-SOFT,
volume = "55",
number = "3",
pages = "??--??",
month = oct,
year = "2013",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Mar 5 10:15:58 MST 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v55/i03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-08-31; Accepted 2013-01-02",
}
@Article{Spedicato:2013:LPP,
author = "Giorgio Alfredo Spedicato",
title = "The {\tt lifecontingencies} Package: Performing
Financial and Actuarial Mathematics Calculations in
{R}",
journal = j-J-STAT-SOFT,
volume = "55",
number = "10",
pages = "??--??",
month = nov,
year = "2013",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Mar 5 10:15:58 MST 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v55/i10",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2012-04-10; Accepted 2013-04-05",
}
@Article{Taylor:2013:LRP,
author = "Benjamin M. Taylor and Tilman M. Davies and Barry S.
Rowlingson and Peter J. Diggle",
title = "{\tt lgcp}: An {R} Package for Inference with Spatial
and Spatio-Temporal Log-Gaussian {Cox} Processes",
journal = j-J-STAT-SOFT,
volume = "52",
number = "4",
pages = "??--??",
month = feb,
year = "2013",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Tue Apr 30 10:32:07 MDT 2013",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v52/i04",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-09-30; Accepted 2012-09-26",
}
@Book{Tsay:2013:IAF,
author = "Ruey S. Tsay",
title = "An introduction to analysis of financial data with
{R}",
publisher = pub-WILEY,
address = pub-WILEY:adr,
pages = "xiv + 390",
year = "2013",
ISBN = "0-470-89081-9 (hardcover)",
ISBN-13 = "978-0-470-89081-3 (hardcover)",
LCCN = "HG106 .T76 2013",
bibdate = "Thu Jul 10 13:20:05 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
abstract = "\booktitle{An Introduction to Analysis of Financial
Data with R} explores basic concepts of visualization
of financial data. Through a fundamental balance
between theory and applications, the book supplies
readers with an accessible approach to financial
econometric models and their applications to real-world
empirical research. The author supplies a hands-on
introduction to the analysis of financial data using
the freely available R software package and case
studies to illustrate actual implementations of the
discussed methods. The book begins with the basics of
financial data, discussing their summary statistics and
related visualization methods. Subsequent chapters
explore basic time series analysis and simple
econometric models for business, finance, and economics
as well as related topics including: Linear time series
analysis, with coverage of exponential smoothing for
forecasting and methods for model comparison; Different
approaches to calculating asset volatility and various
volatility models; High-frequency financial data and
simple models for price changes, trading intensity, and
realized volatility; Quantitative methods for risk
management, including value at risk and conditional
value at risk; Econometric and statistical methods for
risk assessment based on extreme value theory and
quantile regression. Throughout the book, the visual
nature of the topic is showcased through graphical
representations in R, and two detailed case studies
demonstrate the relevance of statistics in finance. A
related website features additional data sets and R
scripts so readers can create their own simulations and
test their comprehension of the presented techniques",
acknowledgement = ack-nhfb,
author-dates = "1951--",
subject = "Finance; Econometric models; Time-series analysis;
Econometrics; R (Computer program language)",
tableofcontents = "1. Financial Data and Their Properties / 1 \\
1.1 Asset Returns / 2 \\
1.2 Bond Yields and Prices / 7 \\
1.3 Implied Volatility / 10 \\
1.4 R Packages and Demonstrations / 11 \\
1.5 Examples of Financial Data / 17 \\
1.6 Distributional Properties of Returns / 20 \\
1.7 Visualization of Financial Data / 27 \\
1.8 Some Statistical Distributions / 32 \\
2. Linear Models for Financial Times Series / 39 \\
2.1 Stationarity / 40 \\
2.2 Autocorrelation / 43 \\
2.3 Linear time series / 49 \\
2.4 Simple AR models / 51 \\
2.5 Simple MA models / 69 \\
2.6 Simple ARMA Models / 78 \\
2.7 Unit-Root Nonstationarity / 86 \\
2.8 Exponential Smoothing / 94 \\
2.9 Seasonal Models / 97 \\
2.10 Regression with Correlated Errors / 108 \\
2.11 Long-Memory Models / 115 \\
2.12 Model Comparison and Averaging / 118 \\
3. Case Studies of Linear Time Series / 127 \\
3.1 Weekly Regular Gasoline Price / 128 \\
3.2 Global Temperature Anomalies / 139 \\
3.3 U.S. Monthly Unemployment Rates / 156 \\
4. Value at Risk 325 Volatility models / 175 \\
4.1 Characteristics of Volatility / 176 \\
4.2 Structure of a Model / 177 \\
4.3 Model Building / 180 \\
4.4 Testing for ARCH Effect / 180 \\
4.5 The ARCH Model / 184 \\
4.6 The GARTH Model / 197 \\
4.7 The Integrated GARCH Model / 209 \\
4.8 The GARCH-M Model / 211 \\
4.9 The Exponential GARCH Model / 213 \\
4.10 The Threshold GARCH Model / 219 \\
4.11 Asymmetric Power ARCH Models / 221 \\
4.12 An Non-symmetric GARCH Model / 224 \\
4.13 The Stochastic Volatility Model / 226 \\
4.14 Long-Memory Stochastic Volatility Models / 227 \\
4.15 Alternative Approaches / 229 \\
5. Applications of Volatility Models / 241 \\
5.1 GARCH Volatility Terms Structure / 242 \\
5.2 Option Pricing and Hedging / 245 \\
5.3 Time-varying Correlations and Betas / 248 \\
5.4 Minimum Variance Portfolios / 256 \\
5.5 Prediction / 260 \\
6. High-Frequency Financial Data / 271 \\
6.1 Nonsynchronous Trading / 272 \\
6.2 Bid Ask Spread of Trading Prices / 275 \\
6.3 Empirical Characteristics of Trading Data / 278 \\
6.4 Models for Price Changes / 285 \\
6.5 Duration Models / 296 \\
6.5 Realized Volatility / 305 \\
7. Value at Risk\\
7.1 Risk Measure and Coherence / 326 \\
7.2 Remarks on Calculating Risk Measures / 334 \\
7.3 Risk Metrics / 335 \\
7.4 An Econometric Approach / 342 \\
7.5 Quantile Estimation / 349 \\
7.6 Extreme Value Theory / 354 \\
7.7 An Extreme Value Approach to VaR / 364 \\
7.8 Peaks Over Thresholds / 369 \\
7.9 The Stationary Loss Processes / 378 \\
Index",
}
@Article{Unwin:2013:SBRa,
author = "Antony Unwin",
title = "Short Book Review: {{\booktitle{R for Statistics}} by
Pierre-Andr{\'e} Cornillon, Arnaud Guyader,
Fran{\c{c}}ois Husson, Nicolas J{\'e}gou, Julie Josse,
Maela Kloareg, Eric Matzner-L{\o}ber, Laurent
Rouvi{\`e}re}",
journal = j-INT-STAT-REV,
volume = "81",
number = "1",
pages = "168--169",
month = apr,
year = "2013",
CODEN = "ISTRDP",
DOI = "http://dx.doi.org/10.1111/insr.12011_20",
ISSN = "0306-7734 (print), 1751-5823 (electronic)",
ISSN-L = "0306-7734",
bibdate = "Wed Jun 18 11:35:31 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/intstatrev.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
fjournal = "International Statistical Review",
journal-URL = "http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1751-5823;
http://www.jstor.org/journals/03067734.html",
onlinedate = "1 Apr 2013",
}
@Article{Unwin:2013:SBRb,
author = "Antony Unwin",
title = "Short Book Review: {{\booktitle{Discovering Statistics
Using R}} by Andy Field, Jeremy Miles, Zo{\"e} Field}",
journal = j-INT-STAT-REV,
volume = "81",
number = "1",
pages = "169--170",
month = apr,
year = "2013",
CODEN = "ISTRDP",
DOI = "http://dx.doi.org/10.1111/insr.12011_21",
ISSN = "0306-7734 (print), 1751-5823 (electronic)",
ISSN-L = "0306-7734",
bibdate = "Wed Jun 18 11:35:31 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/intstatrev.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
fjournal = "International Statistical Review",
journal-URL = "http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1751-5823;
http://www.jstor.org/journals/03067734.html",
onlinedate = "1 Apr 2013",
}
@Article{Varmaz:2013:RAW,
author = "Armin Varmaz and Christian Fieberg and Andreas
Varwig",
title = "{{\tt RMatlab-app2web}}: {Web} Deployment of {R\slash
MATLAB} Applications",
journal = j-J-STAT-SOFT,
volume = "54",
number = "5",
pages = "??--??",
month = sep,
year = "2013",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Mar 5 10:15:56 MST 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/matlab.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v54/i05",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-06-06; Accepted 2013-01-03",
}
@Article{Vehkalahti:2013:SBRb,
author = "Kimmo Vehkalahti",
title = "Short Book Review: {{\booktitle{Statistics in
Psychology Using R and SPSS}} by Dieter Rasch, Klaus
Kubinger, Takuya Yanagida}",
journal = j-INT-STAT-REV,
volume = "81",
number = "3",
pages = "459--460",
month = dec,
year = "2013",
CODEN = "ISTRDP",
DOI = "http://dx.doi.org/10.1111/insr.12042_1",
ISSN = "0306-7734 (print), 1751-5823 (electronic)",
ISSN-L = "0306-7734",
bibdate = "Tue Jun 17 18:23:20 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/intstatrev.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
fjournal = "International Statistical Review = Revue
Internationale de Statistique",
journal-URL = "http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1751-5823;
http://www.jstor.org/journals/03067734.html",
onlinedate = "24 Nov 2013",
}
@Article{Wang:2013:CRP,
author = "Zhu Wang",
title = "{\tt cts}: An {R} Package for Continuous Time
Autoregressive Models via {Kalman} Filter",
journal = j-J-STAT-SOFT,
volume = "53",
number = "5",
pages = "??--??",
month = apr,
year = "2013",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Tue Apr 30 10:32:09 MDT 2013",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v53/i05",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2012-01-23; Accepted 2012-11-16",
}
@Book{Wunschiers:2013:CBP,
author = "R{\"o}bbe W{\"u}nschiers",
title = "Computational biology: a practical introduction to
biodata processing and analysis with {Linux}, {MySQL},
and {R}",
publisher = pub-SV,
address = pub-SV:adr,
edition = "Second",
pages = "xxix + 449",
year = "2013",
DOI = "http://dx.doi.org/10.1007/978-3-642-34749-8",
ISBN = "3-642-34748-7, 3-642-34749-5 (e-book)",
ISBN-13 = "978-3-642-34748-1, 978-3-642-34749-8 (e-book)",
LCCN = "QH324.2 .W86 2013",
bibdate = "Thu Jul 10 08:57:23 MDT 2014",
bibsource = "fsz3950.oclc.org:210/WorldCat;
http://www.math.utah.edu/pub/tex/bib/linux.bib;
http://www.math.utah.edu/pub/tex/bib/sqlbooks.bib
http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
http://www.math.utah.edu/pub/tex/bib/unix.bib",
abstract = "This greatly expanded 2nd edition provides a practical
introduction to --- data processing with Linux tools
and the programming languages AWK and Perl --- data
management with the relational database system MySQL,
and --- data analysis and visualization with the
statistical computing environment R for students and
practitioners in the life sciences. Although written
for beginners, experienced researchers in areas
involving bioinformatics and computational biology may
benefit from numerous tips and tricks that help to
process, filter and format large datasets. Learning by
doing is the basic concept of this book. Worked
examples illustrate how to employ data processing and
analysis techniques, e.g. for --- finding proteins
potentially causing pathogenicity in bacteria, ---
supporting the significance of BLAST with homology
modeling, or --- detecting candidate proteins that may
be redox-regulated, on the basis of their structure.
All the software tools and datasets used are freely
available. One section is devoted to explaining setup
and maintenance of Linux as an operating system
independent virtual machine. The author's experiences
and knowledge gained from working and teaching in both
academia and industry constitute the foundation for
this practical approach.",
acknowledgement = ack-nhfb,
subject = "Computational biology; Bioinformatics; Automatic Data
Processing; Bioinformatics.; Computational biology.",
tableofcontents = "Whetting Your Appetite \\
Introduction \\
Content of This Book \\
Computer and Operating Systems \\
Unix/Linux \\
Working with Linux \\
The First Touch \\
Working with Files \\
Remote Connections \\
Playing with Text and Data Files \\
Using the Shell \\
Installing BLAST and ClustalW \\
Shell Programming \\
Regular Expressions \\
Sed \\
Programming \\
AWK \\
Perl \\
Other Programming Languages \\
Advanced Data Analysis \\
Relational Databases with MySQL \\
The Statistics Suite R \\
Worked Examples \\
Genomic Analysis of the Pathogenicity Factors from E.
coli Strain O157:H7 and EHEC Strain O104:H4 \\
Limits of BLAST and Homology Modeling \\
Virtual Sequencing of pUC18c \\
Querying for Potential Redox-Regulated Enzymes",
}
@Article{Xie:2013:ARP,
author = "Yihui Xie",
title = "{\tt animation}: An {R} Package for Creating
Animations and Demonstrating Statistical Methods",
journal = j-J-STAT-SOFT,
volume = "53",
number = "1",
pages = "??--??",
month = apr,
year = "2013",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Tue Apr 30 10:32:09 MDT 2013",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v53/i01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-02-12; Accepted 2012-07-02",
}
@Book{Xie:2013:DDR,
author = "Yihui Xie",
title = "Dynamic documents with {R} and {{\tt knitr}}",
publisher = pub-CHAPMAN-HALL-CRC,
address = pub-CHAPMAN-HALL-CRC:adr,
pages = "xxv + 190",
year = "2013",
ISBN = "1-4822-0353-7 (paperback)",
ISBN-13 = "978-1-4822-0353-0 (paperback)",
LCCN = "QA276.4 .X54 2014",
bibdate = "Fri Apr 25 07:05:47 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Chapman and Hall/CRC the R series",
URL = "http://images.tandf.co.uk/common/jackets/websmall/978148220/9781482203530.jpg",
abstract = "Suitable for both beginners and advanced users, this
book shows you how to write reports in simple languages
such as Markdown. The reports range from homework,
projects, exams, books, blogs, and web pages to any
documents related to statistical graphics, computing,
and data analysis. While familiarity with LaTeX and
HTML is helpful, the book requires no prior experience
with advanced programs or languages. For beginners, the
text provides enough features to get started on basic
applications. For power users, the last several
chapters enable an understanding of the extensibility
of the knitr package. \par
We import a dataset into a statistical software
package, run a procedure to get all results, then copy
and paste selected pieces into a typesetting program,
add a few descriptions and finish a report. This is a
common practice of writing statistical reports. There
are obvious dangers and disadvantages in this process:
1. it is error-prone due to too much manual work; 2. it
requires lots of human efforts to do tedious jobs such
as copying results across documents; 3. the workflow is
barely recordable especially when it involves GUI
(Graphical User Interface) operations, therefore it is
difficult to reproduce; 4. a tiny change of the data
source in the future will require the author(s) to go
through the same procedure again, which can take nearly
the same amount of time and effort; 5. the analysis and
writing are separate, so close attention has to be paid
to the synchronization of the two parts; In fact, a
report can be generated dynamically from program code.
Just like a software package has its source code, a
dynamic document is the source code of a report. It is
a combination of computer code and the corresponding
narratives. When we compile the dynamic document, the
program code in it is executed and replaced with the
output; we get a final report by mixing the code output
with the narratives. Because we only manage the source
code, we are free of all the possible problems above.
For example, we can change a single parameter in the
source code, and get a different report on the fly.",
acknowledgement = ack-nhfb,
book-review = "http://tug.org/books/reviews/tb109reviews-xie.html",
subject = "Statistics; Data processing; Technical reports;
Corporation reports; Mathematical statistics; Computer
programs; Technical writing; R (Computer program
language); Knitr; MATHEMATICS / Probability and
Statistics / General.",
}
@Article{Yang:2013:RPS,
author = "Dan Yang and Dylan S. Small",
title = "An {R} package and a study of methods for computing
empirical likelihood",
journal = j-J-STAT-COMPUT-SIMUL,
volume = "83",
number = "7",
pages = "1363--1372",
year = "2013",
CODEN = "JSCSAJ",
DOI = "http://dx.doi.org/10.1080/00949655.2012.660487",
ISSN = "0094-9655 (print), 1026-7778 (electronic), 1563-5163",
ISSN-L = "0094-9655",
bibdate = "Tue Apr 22 09:13:11 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatcomputsimul.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Computation and Simulation",
journal-URL = "http://www.tandfonline.com/loi/gscs20",
}
@Article{Zhu:2013:ERP,
author = "Weicheng Zhu and Changsoon Park",
title = "{\tt edcc}: An {R} Package for the Economic Design of
the Control Chart",
journal = j-J-STAT-SOFT,
volume = "52",
number = "9",
pages = "??--??",
month = feb,
year = "2013",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Tue Apr 30 10:32:07 MDT 2013",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v52/i09",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2012-04-01; Accepted 2012-10-29",
}
@Article{Azzalini:2014:CND,
author = "Adelchi Azzalini and Giovanna Menardi",
title = "Clustering via Nonparametric Density Estimation: The
{R} Package {{\tt pdfCluster}}",
journal = j-J-STAT-SOFT,
volume = "57",
number = "11",
pages = "??--??",
month = may,
year = "2014",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Jun 16 11:01:52 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v57/i11",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2012-06-07; Accepted 2013-08-18",
}
@Article{Berentsen:2014:ILR,
author = "Geir Drage Berentsen and Tore Selland Kleppe and Dag
Bjarne Tj{\o}stheim",
title = "Introducing {\tt localgauss}, an {R} Package for
Estimating and Visualizing Local {Gaussian}
Correlation",
journal = j-J-STAT-SOFT,
volume = "56",
number = "12",
pages = "??--??",
month = feb,
year = "2014",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Mar 5 10:15:59 MST 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v56/i12",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2012-10-19; Accepted 2013-09-11",
}
@Article{Bonhomme:2014:MOA,
author = "Vincent Bonhomme and Sandrine Picq and C{\'e}dric
Gaucherel and Julien Claude",
title = "{{\tt Momocs}}: Outline Analysis Using {R}",
journal = j-J-STAT-SOFT,
volume = "56",
number = "13",
pages = "??--??",
month = feb,
year = "2014",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Mar 5 10:15:59 MST 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v56/i13",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2012-12-24; Accepted 2013-09-07",
}
@Article{Canal:2014:CSC,
author = "Luisa Canal and Rocco Micciolo",
title = "The chi-square controversy: what if {Pearson} had
{R}?",
journal = j-J-STAT-COMPUT-SIMUL,
volume = "84",
number = "5",
pages = "1015--1021",
year = "2014",
CODEN = "JSCSAJ",
DOI = "http://dx.doi.org/10.1080/00949655.2012.737793",
ISSN = "0094-9655 (print), 1026-7778 (electronic), 1563-5163",
ISSN-L = "0094-9655",
bibdate = "Tue Apr 22 09:13:16 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatcomputsimul.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Computation and Simulation",
journal-URL = "http://www.tandfonline.com/loi/gscs20",
}
@Book{Carmona:2014:SAF,
author = "R. (Ren{\'e}) Carmona",
title = "Statistical analysis of financial data in {R}",
publisher = pub-SV,
address = pub-SV:adr,
edition = "Second",
pages = "xvii + 588",
year = "2014",
DOI = "http://dx.doi.org/10.1007/978-1-4614-8788-3",
ISBN = "1-4614-8787-0 (hardcover)",
ISBN-13 = "978-1-4614-8787-6 (hardcover)",
ISSN = "1431-875X",
LCCN = "HG106 .C37 2014",
bibdate = "Thu Jul 10 08:12:40 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/s-plus.bib;
z3950.loc.gov:7090/Voyager",
series = "Springer texts in statistics",
URL = "http://www.loc.gov/catdir/enhancements/fy1404/2013951152-b.html;
http://www.loc.gov/catdir/enhancements/fy1404/2013951152-d.html;
http://www.loc.gov/catdir/enhancements/fy1404/2013951152-t.html",
abstract = "Although there are many books on mathematical finance,
few deal with the statistical aspects of modern data
analysis as applied to financial problems. This book
fills this gap by addressing some of the most
challenging issues facing any financial engineer. It
shows how sophisticated mathematics and modern
statistical techniques can be used in concrete
financial problems. Concerns of risk management are
addressed by the control of extreme values, the fitting
of distributions with heavy tails, the computation of
values at risk (VaR), and other measures of risk. Data
description techniques such as principal component
analysis (PCA), smoothing, and regression are applied
to the construction of yield and forward curve.
Nonparametric estimation and nonlinear filtering are
used for option pricing and earnings prediction. The
book is intended for undergraduate students majoring in
financial engineering, or graduate students in a Master
in finance or MBA program. Because it was designed as a
teaching vehicle, it is sprinkled with practical
examples using market data, and each chapter ends with
exercises. Practical examples are solved in the
computing environment of R. They illustrate problems
occurring in the commodity and energy markets, the
fixed income markets as well as the equity markets, and
even some new emerging markets like the weather
markets. The book can help quantitative analysts by
guiding them through the details of statistical model
estimation and implementation. It will also be of
interest to researchers wishing to manipulate financial
data, implement abstract concepts, and test
mathematical theories, especially by addressing
practical issues that are often neglected in the
presentation of the theory.",
acknowledgement = ack-nhfb,
remark = "Revised edition of the \cite{Carmona:2004:SAF}.",
subject = "Business mathematics; R (Computer program language);
Mathematical statistics; Finance; Mathematical models;
Econometric models;",
tableofcontents = "Univariate Data Distributions \\
Heavy Tail Distributions \\
Dependence and Multivariate Data Exploration \\
Parametric Regression \\
Local and Nonparametric Regression \\
Time Series Models \\
Multivariate Time Series, Linear Systems and Kalman
Filtering \\
Nonlinear Time Series: Models and Simulation \\
Appendices \\
Indices",
}
@Article{Durante:2014:BRBa,
author = "Fabrizio Durante",
title = "Book Review: {{\booktitle{The R Book, Second Edition}}
by Michael J. Crawley}",
journal = j-INT-STAT-REV,
volume = "82",
number = "1",
pages = "145--146",
month = apr,
year = "2014",
CODEN = "ISTRDP",
DOI = "http://dx.doi.org/10.1111/insr.12051_5",
ISSN = "0306-7734 (print), 1751-5823 (electronic)",
ISSN-L = "0306-7734",
bibdate = "Wed Jun 18 15:28:40 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/intstatrev.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
fjournal = "International Statistical Review",
journal-URL = "http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1751-5823;
http://www.jstor.org/journals/03067734.html",
onlinedate = "22 Apr 2014",
}
@Article{Fresno:2014:LLM,
author = "Crist{\'o}bal Fresno and M{\'o}nica Balzarini and
Elmer Fern{\'a}ndez",
title = "{\tt lmdme}: Linear Models on Designed Multivariate
Experiments in {R}",
journal = j-J-STAT-SOFT,
volume = "56",
number = "7",
pages = "??--??",
month = jan,
year = "2014",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Mar 5 10:15:59 MST 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v56/i07",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2012-10-04; Accepted 2013-06-26",
}
@Article{Gillard:2014:BRB,
author = "Jonathan Gillard",
title = "Book Review: {{\booktitle{The R book}}, second
edition}",
journal = j-J-APPL-STAT,
volume = "41",
number = "4",
pages = "909--909",
year = "2014",
DOI = "http://dx.doi.org/10.1080/02664763.2013.853909",
ISSN = "0266-4763 (print), 1360-0532 (electronic)",
ISSN-L = "0266-4763",
bibdate = "Wed Mar 5 08:09:23 MST 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/japplstat.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
acknowledgement = ack-nhfb,
fjournal = "Journal of Applied Statistics",
journal-URL = "http://www.tandfonline.com/loi/cjas20",
}
@Article{Giordani:2014:TWC,
author = "Paolo Giordani and Henk A. L. Kiers and Maria
Antonietta {Del Ferraro}",
title = "Three-Way Component Analysis Using the {R} Package
{{\tt ThreeWay}}",
journal = j-J-STAT-SOFT,
volume = "57",
number = "7",
pages = "??--??",
month = apr,
year = "2014",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Mon Jun 16 11:01:52 MDT 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v57/i07",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2011-11-03; Accepted 2013-11-15",
}
@Article{Gromping:2014:RPF,
author = "Ulrike Gr{\"o}mping",
title = "{R} Package {{\tt FrF2}} for Creating and Analyzing
Fractional Factorial $2$-Level Designs",
journal = j-J-STAT-SOFT,
volume = "56",
number = "1",
pages = "??--??",
month = jan,
year = "2014",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Mar 5 10:15:59 MST 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v56/i01",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2012-08-16; Accepted 2013-04-02",
}
@Article{Hoef:2014:SRP,
author = "Jay Ver Hoef and Erin Peterson and David Clifford and
Rohan Shah",
title = "{{\tt SSN}}: An {R} Package for Spatial Statistical
Modeling on Stream Networks",
journal = j-J-STAT-SOFT,
volume = "56",
number = "3",
pages = "??--??",
month = jan,
year = "2014",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Mar 5 10:15:59 MST 2014",
bibsource = "http://www.math.utah.edu/pub/tex/bib/jstatsoft.bib;
http://www.math.utah.edu/pub/tex/bib/s-plus.bib",
URL = "http://www.jstatsoft.org/v56/i03",
acknowledgement = ack-nhfb,
fjournal = "Journal of Statistical Software",
journal-URL = "http://www.jstatsoft.org/",
pubdates = "Submitted 2012-08-24; Accepted 2013-04-22",
}
@Article{Jamshidian:2014:MRP,
author = "Mortaza Jamshidian and Siavash Jalal and Camden
Jansen",
title = "{{\tt MissMech}}: An {R} Package for Testing
Homoscedasticity, Multivariate Normality, and Missing
Completely at Random {(MCAR)}",
journal = j-J-STAT-SOFT,
volume = "56",
number = "6",
pages = "??--??",
month = jan,
year = "2014",
CODEN = "JSSOBK",
ISSN = "1548-7660",
ISSN-L = "1548-7660",
bibdate = "Wed Ma